Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04450 and DDA3937_RS04455 are separated by 227 nucleotides DDA3937_RS04455 and DDA3937_RS04460 are separated by 2 nucleotides
DDA3937_RS04450: DDA3937_RS04450 - efflux RND transporter periplasmic adaptor subunit, at 982,752 to 983,969
_RS04450
DDA3937_RS04455: DDA3937_RS04455 - response regulator transcription factor, at 984,197 to 984,877
_RS04455
DDA3937_RS04460: DDA3937_RS04460 - HAMP domain-containing protein, at 984,880 to 986,283
_RS04460
Position (kb) 984
985 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 983.204 kb on - strand, within DDA3937_RS04450 at 983.229 kb on - strand, within DDA3937_RS04450 at 983.265 kb on - strand, within DDA3937_RS04450 at 983.420 kb on - strand, within DDA3937_RS04450 at 983.463 kb on + strand, within DDA3937_RS04450 at 983.463 kb on + strand, within DDA3937_RS04450 at 983.464 kb on - strand, within DDA3937_RS04450 at 983.683 kb on - strand, within DDA3937_RS04450 at 983.858 kb on + strand at 983.858 kb on + strand at 983.860 kb on + strand at 983.860 kb on + strand at 983.861 kb on - strand at 983.861 kb on - strand at 983.861 kb on - strand at 983.861 kb on - strand at 983.996 kb on - strand at 984.060 kb on + strand at 984.060 kb on + strand at 984.061 kb on - strand at 984.061 kb on - strand at 984.064 kb on + strand at 984.065 kb on - strand at 984.066 kb on + strand at 984.066 kb on + strand at 984.066 kb on + strand at 984.066 kb on + strand at 984.067 kb on - strand at 984.067 kb on - strand at 984.067 kb on - strand at 984.098 kb on - strand at 984.118 kb on + strand at 984.118 kb on + strand at 984.166 kb on + strand at 984.166 kb on + strand at 984.167 kb on - strand at 984.167 kb on - strand at 984.197 kb on - strand at 984.214 kb on - strand at 984.251 kb on + strand at 984.252 kb on - strand at 984.252 kb on - strand at 984.329 kb on + strand, within DDA3937_RS04455 at 984.329 kb on + strand, within DDA3937_RS04455 at 984.329 kb on + strand, within DDA3937_RS04455 at 984.330 kb on - strand, within DDA3937_RS04455 at 984.332 kb on - strand, within DDA3937_RS04455 at 984.332 kb on - strand, within DDA3937_RS04455 at 984.365 kb on - strand, within DDA3937_RS04455 at 984.381 kb on + strand, within DDA3937_RS04455 at 984.421 kb on + strand, within DDA3937_RS04455 at 984.421 kb on + strand, within DDA3937_RS04455 at 984.422 kb on - strand, within DDA3937_RS04455 at 984.422 kb on - strand, within DDA3937_RS04455 at 984.422 kb on - strand, within DDA3937_RS04455 at 984.422 kb on - strand, within DDA3937_RS04455 at 984.445 kb on + strand, within DDA3937_RS04455 at 984.445 kb on + strand, within DDA3937_RS04455 at 984.485 kb on + strand, within DDA3937_RS04455 at 984.485 kb on + strand, within DDA3937_RS04455 at 984.485 kb on + strand, within DDA3937_RS04455 at 984.485 kb on + strand, within DDA3937_RS04455 at 984.486 kb on - strand, within DDA3937_RS04455 at 984.486 kb on - strand, within DDA3937_RS04455 at 984.486 kb on - strand, within DDA3937_RS04455 at 984.486 kb on - strand, within DDA3937_RS04455 at 984.593 kb on + strand, within DDA3937_RS04455 at 984.594 kb on - strand, within DDA3937_RS04455 at 984.594 kb on - strand, within DDA3937_RS04455 at 984.764 kb on + strand, within DDA3937_RS04455 at 984.764 kb on + strand, within DDA3937_RS04455 at 984.764 kb on + strand, within DDA3937_RS04455 at 984.764 kb on + strand, within DDA3937_RS04455 at 984.765 kb on - strand, within DDA3937_RS04455 at 984.765 kb on - strand, within DDA3937_RS04455 at 984.797 kb on - strand, within DDA3937_RS04455 at 984.829 kb on + strand at 984.830 kb on - strand at 984.957 kb on - strand at 985.014 kb on + strand at 985.014 kb on + strand at 985.014 kb on + strand at 985.014 kb on + strand at 985.014 kb on + strand at 985.015 kb on - strand at 985.015 kb on - strand at 985.015 kb on - strand at 985.015 kb on - strand at 985.015 kb on - strand at 985.015 kb on - strand at 985.015 kb on - strand at 985.015 kb on - strand at 985.084 kb on - strand, within DDA3937_RS04460 at 985.117 kb on + strand, within DDA3937_RS04460 at 985.117 kb on + strand, within DDA3937_RS04460 at 985.117 kb on + strand, within DDA3937_RS04460 at 985.117 kb on + strand, within DDA3937_RS04460 at 985.117 kb on + strand, within DDA3937_RS04460 at 985.117 kb on + strand, within DDA3937_RS04460 at 985.118 kb on - strand, within DDA3937_RS04460 at 985.118 kb on - strand, within DDA3937_RS04460 at 985.118 kb on - strand, within DDA3937_RS04460 at 985.118 kb on - strand, within DDA3937_RS04460 at 985.118 kb on - strand, within DDA3937_RS04460 at 985.118 kb on - strand, within DDA3937_RS04460 at 985.118 kb on - strand, within DDA3937_RS04460 at 985.118 kb on - strand, within DDA3937_RS04460 at 985.118 kb on - strand, within DDA3937_RS04460 at 985.118 kb on - strand, within DDA3937_RS04460 at 985.118 kb on - strand, within DDA3937_RS04460 at 985.152 kb on + strand, within DDA3937_RS04460 at 985.152 kb on + strand, within DDA3937_RS04460 at 985.153 kb on - strand, within DDA3937_RS04460 at 985.153 kb on - strand, within DDA3937_RS04460 at 985.165 kb on - strand, within DDA3937_RS04460 at 985.248 kb on - strand, within DDA3937_RS04460 at 985.314 kb on + strand, within DDA3937_RS04460 at 985.315 kb on - strand, within DDA3937_RS04460 at 985.315 kb on - strand, within DDA3937_RS04460 at 985.571 kb on + strand, within DDA3937_RS04460 at 985.572 kb on - strand, within DDA3937_RS04460 at 985.572 kb on - strand, within DDA3937_RS04460 at 985.572 kb on - strand, within DDA3937_RS04460 at 985.788 kb on + strand, within DDA3937_RS04460 at 985.789 kb on - strand, within DDA3937_RS04460 at 985.789 kb on - strand, within DDA3937_RS04460 at 985.831 kb on + strand, within DDA3937_RS04460 at 985.832 kb on - strand, within DDA3937_RS04460
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 983,204 - DDA3937_RS04450 0.37 +1.1 983,229 - DDA3937_RS04450 0.39 -0.1 983,265 - DDA3937_RS04450 0.42 -1.0 983,420 - DDA3937_RS04450 0.55 +2.3 983,463 + DDA3937_RS04450 0.58 -0.6 983,463 + DDA3937_RS04450 0.58 -2.6 983,464 - DDA3937_RS04450 0.58 +0.5 983,683 - DDA3937_RS04450 0.76 +0.0 983,858 + -1.3 983,858 + -1.5 983,860 + +1.3 983,860 + +0.2 983,861 - -1.7 983,861 - -0.2 983,861 - -1.5 983,861 - -0.5 983,996 - +1.5 984,060 + +0.1 984,060 + -0.1 984,061 - +1.3 984,061 - -0.7 984,064 + -0.6 984,065 - -1.6 984,066 + +0.9 984,066 + -0.1 984,066 + -0.8 984,066 + -0.5 984,067 - +0.7 984,067 - -0.5 984,067 - +0.7 984,098 - -0.5 984,118 + +0.7 984,118 + +0.8 984,166 + -2.7 984,166 + -0.1 984,167 - -0.4 984,167 - -0.2 984,197 - +0.1 984,214 - +1.8 984,251 + -1.2 984,252 - -0.8 984,252 - +0.8 984,329 + DDA3937_RS04455 0.19 -2.5 984,329 + DDA3937_RS04455 0.19 +0.5 984,329 + DDA3937_RS04455 0.19 -0.9 984,330 - DDA3937_RS04455 0.20 +0.8 984,332 - DDA3937_RS04455 0.20 -1.8 984,332 - DDA3937_RS04455 0.20 -0.2 984,365 - DDA3937_RS04455 0.25 -0.3 984,381 + DDA3937_RS04455 0.27 -1.2 984,421 + DDA3937_RS04455 0.33 -0.9 984,421 + DDA3937_RS04455 0.33 -0.7 984,422 - DDA3937_RS04455 0.33 +1.0 984,422 - DDA3937_RS04455 0.33 -1.9 984,422 - DDA3937_RS04455 0.33 +0.6 984,422 - DDA3937_RS04455 0.33 -0.1 984,445 + DDA3937_RS04455 0.36 +0.5 984,445 + DDA3937_RS04455 0.36 -0.6 984,485 + DDA3937_RS04455 0.42 +0.2 984,485 + DDA3937_RS04455 0.42 -1.8 984,485 + DDA3937_RS04455 0.42 +0.7 984,485 + DDA3937_RS04455 0.42 -0.9 984,486 - DDA3937_RS04455 0.42 -0.9 984,486 - DDA3937_RS04455 0.42 -0.7 984,486 - DDA3937_RS04455 0.42 +0.0 984,486 - DDA3937_RS04455 0.42 -1.5 984,593 + DDA3937_RS04455 0.58 +1.1 984,594 - DDA3937_RS04455 0.58 -0.6 984,594 - DDA3937_RS04455 0.58 +1.2 984,764 + DDA3937_RS04455 0.83 -0.8 984,764 + DDA3937_RS04455 0.83 -2.7 984,764 + DDA3937_RS04455 0.83 -0.9 984,764 + DDA3937_RS04455 0.83 -2.8 984,765 - DDA3937_RS04455 0.83 -0.3 984,765 - DDA3937_RS04455 0.83 -1.4 984,797 - DDA3937_RS04455 0.88 +1.1 984,829 + -1.8 984,830 - -1.4 984,957 - -1.4 985,014 + -0.3 985,014 + -0.3 985,014 + -2.4 985,014 + -2.4 985,014 + +0.4 985,015 - -0.8 985,015 - -1.6 985,015 - -1.4 985,015 - -0.9 985,015 - +0.1 985,015 - +1.2 985,015 - +0.4 985,015 - -1.5 985,084 - DDA3937_RS04460 0.15 +0.1 985,117 + DDA3937_RS04460 0.17 -0.8 985,117 + DDA3937_RS04460 0.17 +0.4 985,117 + DDA3937_RS04460 0.17 -0.1 985,117 + DDA3937_RS04460 0.17 +0.5 985,117 + DDA3937_RS04460 0.17 +1.2 985,117 + DDA3937_RS04460 0.17 +0.2 985,118 - DDA3937_RS04460 0.17 -3.1 985,118 - DDA3937_RS04460 0.17 +0.5 985,118 - DDA3937_RS04460 0.17 -1.1 985,118 - DDA3937_RS04460 0.17 +0.0 985,118 - DDA3937_RS04460 0.17 -1.6 985,118 - DDA3937_RS04460 0.17 -1.9 985,118 - DDA3937_RS04460 0.17 -0.1 985,118 - DDA3937_RS04460 0.17 -0.2 985,118 - DDA3937_RS04460 0.17 +0.2 985,118 - DDA3937_RS04460 0.17 -0.3 985,118 - DDA3937_RS04460 0.17 -1.7 985,152 + DDA3937_RS04460 0.19 -1.6 985,152 + DDA3937_RS04460 0.19 +1.1 985,153 - DDA3937_RS04460 0.19 -0.5 985,153 - DDA3937_RS04460 0.19 -1.7 985,165 - DDA3937_RS04460 0.20 -0.3 985,248 - DDA3937_RS04460 0.26 -0.7 985,314 + DDA3937_RS04460 0.31 +2.2 985,315 - DDA3937_RS04460 0.31 -0.2 985,315 - DDA3937_RS04460 0.31 +0.5 985,571 + DDA3937_RS04460 0.49 -0.4 985,572 - DDA3937_RS04460 0.49 -0.7 985,572 - DDA3937_RS04460 0.49 +1.5 985,572 - DDA3937_RS04460 0.49 +0.6 985,788 + DDA3937_RS04460 0.65 -0.8 985,789 - DDA3937_RS04460 0.65 +0.5 985,789 - DDA3937_RS04460 0.65 -0.2 985,831 + DDA3937_RS04460 0.68 -0.6 985,832 - DDA3937_RS04460 0.68 +1.1
Or see this region's nucleotide sequence