Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04025

Experiment: Upstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS04020 and DDA3937_RS04025 are separated by 2 nucleotidesDDA3937_RS04025 and DDA3937_RS04030 overlap by 4 nucleotidesDDA3937_RS04030 and DDA3937_RS04035 are separated by 2 nucleotides DDA3937_RS04020: DDA3937_RS04020 - P-type conjugative transfer protein TrbL, at 897,335 to 898,498 _RS04020 DDA3937_RS04025: DDA3937_RS04025 - conjugal transfer protein TrbF, at 898,501 to 899,205 _RS04025 DDA3937_RS04030: DDA3937_RS04030 - P-type conjugative transfer protein TrbG, at 899,202 to 900,098 _RS04030 DDA3937_RS04035: DDA3937_RS04035 - TrbI/VirB10 family protein, at 900,101 to 901,339 _RS04035 Position (kb) 898 899 900Strain fitness (log2 ratio) -2 -1 0 1 2 3at 897.542 kb on + strand, within DDA3937_RS04020at 897.542 kb on + strand, within DDA3937_RS04020at 897.542 kb on + strand, within DDA3937_RS04020at 897.542 kb on + strand, within DDA3937_RS04020at 897.543 kb on - strand, within DDA3937_RS04020at 897.543 kb on - strand, within DDA3937_RS04020at 897.543 kb on - strand, within DDA3937_RS04020at 897.543 kb on - strand, within DDA3937_RS04020at 897.543 kb on - strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.561 kb on - strand, within DDA3937_RS04020at 897.561 kb on - strand, within DDA3937_RS04020at 897.561 kb on - strand, within DDA3937_RS04020at 897.561 kb on - strand, within DDA3937_RS04020at 897.564 kb on + strand, within DDA3937_RS04020at 897.564 kb on + strand, within DDA3937_RS04020at 897.564 kb on + strand, within DDA3937_RS04020at 897.564 kb on + strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.595 kb on - strand, within DDA3937_RS04020at 897.597 kb on + strand, within DDA3937_RS04020at 897.598 kb on - strand, within DDA3937_RS04020at 897.682 kb on + strand, within DDA3937_RS04020at 897.691 kb on + strand, within DDA3937_RS04020at 897.693 kb on + strand, within DDA3937_RS04020at 897.693 kb on + strand, within DDA3937_RS04020at 897.693 kb on + strand, within DDA3937_RS04020at 897.694 kb on - strand, within DDA3937_RS04020at 897.694 kb on - strand, within DDA3937_RS04020at 897.697 kb on + strand, within DDA3937_RS04020at 897.698 kb on - strand, within DDA3937_RS04020at 897.760 kb on + strand, within DDA3937_RS04020at 897.760 kb on + strand, within DDA3937_RS04020at 897.760 kb on + strand, within DDA3937_RS04020at 897.761 kb on - strand, within DDA3937_RS04020at 897.761 kb on - strand, within DDA3937_RS04020at 897.761 kb on - strand, within DDA3937_RS04020at 897.761 kb on - strand, within DDA3937_RS04020at 897.804 kb on + strand, within DDA3937_RS04020at 897.828 kb on + strand, within DDA3937_RS04020at 897.829 kb on - strand, within DDA3937_RS04020at 897.972 kb on + strand, within DDA3937_RS04020at 897.973 kb on - strand, within DDA3937_RS04020at 898.183 kb on - strand, within DDA3937_RS04020at 898.183 kb on - strand, within DDA3937_RS04020at 898.183 kb on - strand, within DDA3937_RS04020at 898.183 kb on - strand, within DDA3937_RS04020at 898.228 kb on + strand, within DDA3937_RS04020at 898.229 kb on - strand, within DDA3937_RS04020at 898.288 kb on + strand, within DDA3937_RS04020at 898.289 kb on - strand, within DDA3937_RS04020at 898.377 kb on + strand, within DDA3937_RS04020at 898.377 kb on + strand, within DDA3937_RS04020at 898.378 kb on - strand, within DDA3937_RS04020at 898.424 kb on - strandat 898.528 kb on + strandat 898.528 kb on + strandat 898.559 kb on - strandat 898.559 kb on - strandat 898.711 kb on + strand, within DDA3937_RS04025at 898.712 kb on - strand, within DDA3937_RS04025at 898.712 kb on - strand, within DDA3937_RS04025at 898.771 kb on + strand, within DDA3937_RS04025at 898.771 kb on + strand, within DDA3937_RS04025at 898.771 kb on + strand, within DDA3937_RS04025at 898.772 kb on - strand, within DDA3937_RS04025at 898.772 kb on - strandat 898.799 kb on - strand, within DDA3937_RS04025at 898.799 kb on - strand, within DDA3937_RS04025at 898.815 kb on + strand, within DDA3937_RS04025at 898.815 kb on + strand, within DDA3937_RS04025at 898.879 kb on + strand, within DDA3937_RS04025at 898.879 kb on + strand, within DDA3937_RS04025at 898.880 kb on - strand, within DDA3937_RS04025at 898.885 kb on + strand, within DDA3937_RS04025at 898.885 kb on + strand, within DDA3937_RS04025at 898.885 kb on + strand, within DDA3937_RS04025at 898.886 kb on - strand, within DDA3937_RS04025at 898.886 kb on - strand, within DDA3937_RS04025at 898.887 kb on + strand, within DDA3937_RS04025at 898.888 kb on - strand, within DDA3937_RS04025at 898.922 kb on - strand, within DDA3937_RS04025at 899.147 kb on - strandat 899.149 kb on - strandat 899.217 kb on + strandat 899.218 kb on - strandat 899.218 kb on - strandat 899.218 kb on - strandat 899.218 kb on - strandat 899.220 kb on + strandat 899.222 kb on - strandat 899.235 kb on + strandat 899.236 kb on - strandat 899.236 kb on - strandat 899.327 kb on + strand, within DDA3937_RS04030at 899.327 kb on + strand, within DDA3937_RS04030at 899.327 kb on + strand, within DDA3937_RS04030at 899.344 kb on + strand, within DDA3937_RS04030at 899.344 kb on + strand, within DDA3937_RS04030at 899.469 kb on + strand, within DDA3937_RS04030at 899.469 kb on + strand, within DDA3937_RS04030at 899.469 kb on + strand, within DDA3937_RS04030at 899.470 kb on - strand, within DDA3937_RS04030at 899.470 kb on - strand, within DDA3937_RS04030at 899.480 kb on + strandat 899.481 kb on - strand, within DDA3937_RS04030at 899.481 kb on - strand, within DDA3937_RS04030at 899.552 kb on + strand, within DDA3937_RS04030at 899.576 kb on + strand, within DDA3937_RS04030at 899.577 kb on - strand, within DDA3937_RS04030at 899.613 kb on - strand, within DDA3937_RS04030at 899.613 kb on - strand, within DDA3937_RS04030at 899.679 kb on + strand, within DDA3937_RS04030at 899.679 kb on + strand, within DDA3937_RS04030at 899.679 kb on + strand, within DDA3937_RS04030at 899.679 kb on + strand, within DDA3937_RS04030at 899.680 kb on - strand, within DDA3937_RS04030at 899.680 kb on - strand, within DDA3937_RS04030at 899.680 kb on - strand, within DDA3937_RS04030at 899.736 kb on + strand, within DDA3937_RS04030at 899.892 kb on + strand, within DDA3937_RS04030at 899.892 kb on + strand, within DDA3937_RS04030at 899.892 kb on + strand, within DDA3937_RS04030at 899.892 kb on + strand, within DDA3937_RS04030at 899.893 kb on - strand, within DDA3937_RS04030at 899.893 kb on - strand, within DDA3937_RS04030at 899.893 kb on - strand, within DDA3937_RS04030at 899.893 kb on - strand, within DDA3937_RS04030at 899.893 kb on - strand, within DDA3937_RS04030at 899.980 kb on - strand, within DDA3937_RS04030at 899.997 kb on + strand, within DDA3937_RS04030at 899.997 kb on + strand, within DDA3937_RS04030at 899.997 kb on + strand, within DDA3937_RS04030at 899.998 kb on - strand, within DDA3937_RS04030at 899.998 kb on - strand, within DDA3937_RS04030at 899.998 kb on - strandat 900.000 kb on + strand, within DDA3937_RS04030at 900.000 kb on + strand, within DDA3937_RS04030at 900.000 kb on + strand, within DDA3937_RS04030at 900.000 kb on + strand, within DDA3937_RS04030at 900.000 kb on + strandat 900.000 kb on + strand, within DDA3937_RS04030at 900.000 kb on + strand, within DDA3937_RS04030at 900.000 kb on + strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.072 kb on - strandat 900.100 kb on + strandat 900.100 kb on + strandat 900.101 kb on - strandat 900.101 kb on - strandat 900.101 kb on - strandat 900.101 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
remove
897,542 + DDA3937_RS04020 0.18 +0.1
897,542 + DDA3937_RS04020 0.18 +0.2
897,542 + DDA3937_RS04020 0.18 +0.1
897,542 + DDA3937_RS04020 0.18 -0.6
897,543 - DDA3937_RS04020 0.18 -0.9
897,543 - DDA3937_RS04020 0.18 +1.1
897,543 - DDA3937_RS04020 0.18 +0.2
897,543 - DDA3937_RS04020 0.18 -0.4
897,543 - DDA3937_RS04020 0.18 -1.0
897,560 + DDA3937_RS04020 0.19 -1.0
897,560 + DDA3937_RS04020 0.19 -0.3
897,560 + DDA3937_RS04020 0.19 +2.9
897,560 + DDA3937_RS04020 0.19 -0.3
897,560 + DDA3937_RS04020 0.19 -0.3
897,560 + DDA3937_RS04020 0.19 -0.4
897,561 - DDA3937_RS04020 0.19 -0.6
897,561 - DDA3937_RS04020 0.19 -0.1
897,561 - DDA3937_RS04020 0.19 +3.1
897,561 - DDA3937_RS04020 0.19 -0.7
897,564 + DDA3937_RS04020 0.20 +0.2
897,564 + DDA3937_RS04020 0.20 +0.4
897,564 + DDA3937_RS04020 0.20 +1.1
897,564 + DDA3937_RS04020 0.20 -1.3
897,565 - DDA3937_RS04020 0.20 -0.9
897,565 - DDA3937_RS04020 0.20 +0.5
897,565 - DDA3937_RS04020 0.20 -1.4
897,565 - DDA3937_RS04020 0.20 -0.7
897,565 - DDA3937_RS04020 0.20 -1.2
897,565 - DDA3937_RS04020 0.20 +0.1
897,595 - DDA3937_RS04020 0.22 -0.2
897,597 + DDA3937_RS04020 0.23 +2.1
897,598 - DDA3937_RS04020 0.23 -1.7
897,682 + DDA3937_RS04020 0.30 +0.3
897,691 + DDA3937_RS04020 0.31 -0.8
897,693 + DDA3937_RS04020 0.31 +1.3
897,693 + DDA3937_RS04020 0.31 -0.5
897,693 + DDA3937_RS04020 0.31 +0.1
897,694 - DDA3937_RS04020 0.31 -0.6
897,694 - DDA3937_RS04020 0.31 +0.3
897,697 + DDA3937_RS04020 0.31 -0.5
897,698 - DDA3937_RS04020 0.31 -0.1
897,760 + DDA3937_RS04020 0.37 +1.3
897,760 + DDA3937_RS04020 0.37 +0.9
897,760 + DDA3937_RS04020 0.37 -2.3
897,761 - DDA3937_RS04020 0.37 -1.1
897,761 - DDA3937_RS04020 0.37 -1.4
897,761 - DDA3937_RS04020 0.37 +0.1
897,761 - DDA3937_RS04020 0.37 +0.9
897,804 + DDA3937_RS04020 0.40 -1.0
897,828 + DDA3937_RS04020 0.42 -0.4
897,829 - DDA3937_RS04020 0.42 -0.1
897,972 + DDA3937_RS04020 0.55 +0.1
897,973 - DDA3937_RS04020 0.55 -1.3
898,183 - DDA3937_RS04020 0.73 -0.9
898,183 - DDA3937_RS04020 0.73 -0.6
898,183 - DDA3937_RS04020 0.73 +0.2
898,183 - DDA3937_RS04020 0.73 -1.3
898,228 + DDA3937_RS04020 0.77 +0.5
898,229 - DDA3937_RS04020 0.77 +3.1
898,288 + DDA3937_RS04020 0.82 +0.5
898,289 - DDA3937_RS04020 0.82 +1.7
898,377 + DDA3937_RS04020 0.90 +0.3
898,377 + DDA3937_RS04020 0.90 -0.6
898,378 - DDA3937_RS04020 0.90 -0.0
898,424 - -1.4
898,528 + -1.2
898,528 + -0.3
898,559 - -2.0
898,559 - +0.8
898,711 + DDA3937_RS04025 0.30 -0.2
898,712 - DDA3937_RS04025 0.30 +0.2
898,712 - DDA3937_RS04025 0.30 +0.8
898,771 + DDA3937_RS04025 0.38 -0.0
898,771 + DDA3937_RS04025 0.38 +0.1
898,771 + DDA3937_RS04025 0.38 +0.2
898,772 - DDA3937_RS04025 0.38 +0.7
898,772 - -0.5
898,799 - DDA3937_RS04025 0.42 -1.7
898,799 - DDA3937_RS04025 0.42 -0.1
898,815 + DDA3937_RS04025 0.45 -1.1
898,815 + DDA3937_RS04025 0.45 -1.2
898,879 + DDA3937_RS04025 0.54 -1.7
898,879 + DDA3937_RS04025 0.54 -0.6
898,880 - DDA3937_RS04025 0.54 -1.7
898,885 + DDA3937_RS04025 0.54 -0.3
898,885 + DDA3937_RS04025 0.54 +1.4
898,885 + DDA3937_RS04025 0.54 -0.2
898,886 - DDA3937_RS04025 0.55 -1.1
898,886 - DDA3937_RS04025 0.55 +0.4
898,887 + DDA3937_RS04025 0.55 -0.8
898,888 - DDA3937_RS04025 0.55 -1.3
898,922 - DDA3937_RS04025 0.60 +0.8
899,147 - +1.6
899,149 - +0.2
899,217 + -1.0
899,218 - -0.1
899,218 - +0.4
899,218 - -0.6
899,218 - +0.1
899,220 + -0.1
899,222 - -1.7
899,235 + +0.6
899,236 - +0.6
899,236 - -2.2
899,327 + DDA3937_RS04030 0.14 +0.6
899,327 + DDA3937_RS04030 0.14 -1.6
899,327 + DDA3937_RS04030 0.14 -0.3
899,344 + DDA3937_RS04030 0.16 -1.3
899,344 + DDA3937_RS04030 0.16 -0.8
899,469 + DDA3937_RS04030 0.30 -2.0
899,469 + DDA3937_RS04030 0.30 -0.8
899,469 + DDA3937_RS04030 0.30 +0.6
899,470 - DDA3937_RS04030 0.30 +3.1
899,470 - DDA3937_RS04030 0.30 +0.2
899,480 + +2.5
899,481 - DDA3937_RS04030 0.31 -0.7
899,481 - DDA3937_RS04030 0.31 -0.9
899,552 + DDA3937_RS04030 0.39 +0.6
899,576 + DDA3937_RS04030 0.42 -0.8
899,577 - DDA3937_RS04030 0.42 -1.6
899,613 - DDA3937_RS04030 0.46 +0.0
899,613 - DDA3937_RS04030 0.46 -1.5
899,679 + DDA3937_RS04030 0.53 +0.7
899,679 + DDA3937_RS04030 0.53 -0.6
899,679 + DDA3937_RS04030 0.53 +0.0
899,679 + DDA3937_RS04030 0.53 -1.2
899,680 - DDA3937_RS04030 0.53 -1.1
899,680 - DDA3937_RS04030 0.53 +1.9
899,680 - DDA3937_RS04030 0.53 +1.0
899,736 + DDA3937_RS04030 0.60 -1.0
899,892 + DDA3937_RS04030 0.77 -0.6
899,892 + DDA3937_RS04030 0.77 +0.4
899,892 + DDA3937_RS04030 0.77 -0.5
899,892 + DDA3937_RS04030 0.77 -0.7
899,893 - DDA3937_RS04030 0.77 +0.5
899,893 - DDA3937_RS04030 0.77 -1.1
899,893 - DDA3937_RS04030 0.77 -1.3
899,893 - DDA3937_RS04030 0.77 +0.4
899,893 - DDA3937_RS04030 0.77 -0.6
899,980 - DDA3937_RS04030 0.87 -0.3
899,997 + DDA3937_RS04030 0.89 -0.3
899,997 + DDA3937_RS04030 0.89 +1.3
899,997 + DDA3937_RS04030 0.89 -0.4
899,998 - DDA3937_RS04030 0.89 -0.6
899,998 - DDA3937_RS04030 0.89 -1.5
899,998 - +0.9
900,000 + DDA3937_RS04030 0.89 -0.2
900,000 + DDA3937_RS04030 0.89 +0.1
900,000 + DDA3937_RS04030 0.89 -1.8
900,000 + DDA3937_RS04030 0.89 +2.1
900,000 + -0.5
900,000 + DDA3937_RS04030 0.89 -1.5
900,000 + DDA3937_RS04030 0.89 +0.1
900,000 + DDA3937_RS04030 0.89 -1.2
900,001 - DDA3937_RS04030 0.89 -0.4
900,001 - DDA3937_RS04030 0.89 -1.3
900,001 - DDA3937_RS04030 0.89 +0.4
900,001 - DDA3937_RS04030 0.89 +0.3
900,001 - DDA3937_RS04030 0.89 +0.7
900,001 - DDA3937_RS04030 0.89 -1.3
900,001 - DDA3937_RS04030 0.89 +2.3
900,001 - DDA3937_RS04030 0.89 -0.0
900,001 - DDA3937_RS04030 0.89 -1.5
900,001 - DDA3937_RS04030 0.89 +0.0
900,072 - -0.8
900,100 + -2.3
900,100 + +0.2
900,101 - -1.4
900,101 - -0.5
900,101 - -0.3
900,101 - -0.8

Or see this region's nucleotide sequence