Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03650 and DDA3937_RS03655 are separated by 106 nucleotides DDA3937_RS03655 and DDA3937_RS03660 are separated by 77 nucleotides
DDA3937_RS03650: DDA3937_RS03650 - MFS transporter, at 805,792 to 806,967
_RS03650
DDA3937_RS03655: DDA3937_RS03655 - LysR family transcriptional regulator, at 807,074 to 807,961
_RS03655
DDA3937_RS03660: DDA3937_RS03660 - 2,5-didehydrogluconate reductase DkgB, at 808,039 to 808,845
_RS03660
Position (kb) 807
808 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 806.096 kb on + strand, within DDA3937_RS03650 at 806.154 kb on + strand, within DDA3937_RS03650 at 806.154 kb on + strand, within DDA3937_RS03650 at 806.343 kb on + strand, within DDA3937_RS03650 at 806.351 kb on + strand, within DDA3937_RS03650 at 806.351 kb on + strand, within DDA3937_RS03650 at 806.351 kb on + strand at 806.453 kb on - strand, within DDA3937_RS03650 at 806.684 kb on - strand, within DDA3937_RS03650 at 806.696 kb on + strand, within DDA3937_RS03650 at 806.696 kb on + strand, within DDA3937_RS03650 at 806.696 kb on + strand, within DDA3937_RS03650 at 806.697 kb on - strand, within DDA3937_RS03650 at 806.828 kb on + strand, within DDA3937_RS03650 at 806.829 kb on - strand, within DDA3937_RS03650 at 806.967 kb on + strand at 806.967 kb on + strand at 806.967 kb on + strand at 806.967 kb on + strand at 806.967 kb on + strand at 806.968 kb on - strand at 806.968 kb on - strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.972 kb on - strand at 806.972 kb on - strand at 806.972 kb on - strand at 806.972 kb on - strand at 806.972 kb on - strand at 806.979 kb on + strand at 806.979 kb on + strand at 806.980 kb on - strand at 807.269 kb on + strand at 807.291 kb on + strand, within DDA3937_RS03655 at 807.291 kb on + strand, within DDA3937_RS03655 at 807.291 kb on + strand, within DDA3937_RS03655 at 807.291 kb on + strand, within DDA3937_RS03655 at 807.292 kb on - strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.295 kb on - strand, within DDA3937_RS03655 at 807.295 kb on - strand, within DDA3937_RS03655 at 807.295 kb on - strand, within DDA3937_RS03655 at 807.553 kb on + strand, within DDA3937_RS03655 at 807.560 kb on + strand, within DDA3937_RS03655 at 807.560 kb on + strand, within DDA3937_RS03655 at 807.587 kb on + strand, within DDA3937_RS03655 at 807.587 kb on + strand, within DDA3937_RS03655 at 807.587 kb on + strand, within DDA3937_RS03655 at 807.587 kb on + strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.707 kb on + strand, within DDA3937_RS03655 at 807.707 kb on + strand, within DDA3937_RS03655 at 807.797 kb on + strand, within DDA3937_RS03655 at 807.797 kb on + strand, within DDA3937_RS03655 at 807.797 kb on + strand, within DDA3937_RS03655 at 807.798 kb on - strand, within DDA3937_RS03655 at 807.887 kb on + strand at 807.890 kb on + strand at 807.891 kb on - strand at 807.891 kb on - strand at 807.959 kb on + strand at 807.960 kb on - strand at 807.988 kb on + strand at 807.989 kb on - strand at 807.989 kb on - strand at 808.179 kb on + strand, within DDA3937_RS03660 at 808.278 kb on + strand, within DDA3937_RS03660 at 808.313 kb on + strand, within DDA3937_RS03660 at 808.313 kb on + strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.577 kb on + strand, within DDA3937_RS03660 at 808.578 kb on - strand, within DDA3937_RS03660 at 808.667 kb on + strand, within DDA3937_RS03660 at 808.667 kb on + strand, within DDA3937_RS03660 at 808.668 kb on - strand, within DDA3937_RS03660 at 808.668 kb on - strand, within DDA3937_RS03660 at 808.668 kb on - strand, within DDA3937_RS03660 at 808.731 kb on - strand at 808.731 kb on - strand, within DDA3937_RS03660 at 808.731 kb on - strand, within DDA3937_RS03660 at 808.795 kb on + strand at 808.795 kb on + strand at 808.795 kb on + strand at 808.796 kb on - strand at 808.796 kb on - strand at 808.796 kb on - strand at 808.806 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.819 kb on - strand at 808.819 kb on - strand at 808.819 kb on - strand at 808.819 kb on - strand at 808.870 kb on + strand at 808.947 kb on + strand at 808.960 kb on + strand at 808.961 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 806,096 + DDA3937_RS03650 0.26 -0.8 806,154 + DDA3937_RS03650 0.31 -0.5 806,154 + DDA3937_RS03650 0.31 -0.3 806,343 + DDA3937_RS03650 0.47 -0.7 806,351 + DDA3937_RS03650 0.48 -1.1 806,351 + DDA3937_RS03650 0.48 -0.4 806,351 + +0.5 806,453 - DDA3937_RS03650 0.56 -0.2 806,684 - DDA3937_RS03650 0.76 -1.1 806,696 + DDA3937_RS03650 0.77 +0.4 806,696 + DDA3937_RS03650 0.77 -0.9 806,696 + DDA3937_RS03650 0.77 +1.5 806,697 - DDA3937_RS03650 0.77 +0.1 806,828 + DDA3937_RS03650 0.88 +0.0 806,829 - DDA3937_RS03650 0.88 -0.8 806,967 + +0.5 806,967 + +0.1 806,967 + -1.9 806,967 + +0.5 806,967 + +0.4 806,968 - +0.5 806,968 - -0.6 806,971 + -0.4 806,971 + +0.1 806,971 + -0.1 806,971 + -0.5 806,971 + -0.9 806,971 + +0.5 806,971 + +0.5 806,972 - +0.1 806,972 - -1.0 806,972 - +0.4 806,972 - +0.6 806,972 - +0.0 806,979 + -1.2 806,979 + +0.1 806,980 - -1.1 807,269 + +2.3 807,291 + DDA3937_RS03655 0.24 -0.3 807,291 + DDA3937_RS03655 0.24 -1.4 807,291 + DDA3937_RS03655 0.24 +0.5 807,291 + DDA3937_RS03655 0.24 -1.2 807,292 - DDA3937_RS03655 0.25 +0.0 807,294 + DDA3937_RS03655 0.25 -1.2 807,294 + DDA3937_RS03655 0.25 -1.6 807,294 + DDA3937_RS03655 0.25 -0.9 807,294 + DDA3937_RS03655 0.25 -1.3 807,294 + DDA3937_RS03655 0.25 -0.8 807,294 + DDA3937_RS03655 0.25 -0.1 807,294 + DDA3937_RS03655 0.25 -0.2 807,294 + DDA3937_RS03655 0.25 -0.8 807,295 - DDA3937_RS03655 0.25 -0.3 807,295 - DDA3937_RS03655 0.25 -1.4 807,295 - DDA3937_RS03655 0.25 +0.2 807,553 + DDA3937_RS03655 0.54 -2.0 807,560 + DDA3937_RS03655 0.55 -0.4 807,560 + DDA3937_RS03655 0.55 -0.6 807,587 + DDA3937_RS03655 0.58 -0.7 807,587 + DDA3937_RS03655 0.58 +0.2 807,587 + DDA3937_RS03655 0.58 +0.9 807,587 + DDA3937_RS03655 0.58 -0.4 807,588 - DDA3937_RS03655 0.58 -0.3 807,588 - DDA3937_RS03655 0.58 -0.6 807,588 - DDA3937_RS03655 0.58 -0.2 807,588 - DDA3937_RS03655 0.58 +0.1 807,588 - DDA3937_RS03655 0.58 +1.2 807,707 + DDA3937_RS03655 0.71 -1.3 807,707 + DDA3937_RS03655 0.71 -0.5 807,797 + DDA3937_RS03655 0.81 -0.8 807,797 + DDA3937_RS03655 0.81 +0.1 807,797 + DDA3937_RS03655 0.81 +0.9 807,798 - DDA3937_RS03655 0.82 -2.8 807,887 + -1.1 807,890 + -0.2 807,891 - -0.7 807,891 - +0.3 807,959 + -0.3 807,960 - -2.1 807,988 + +1.6 807,989 - -0.0 807,989 - +1.5 808,179 + DDA3937_RS03660 0.17 +0.2 808,278 + DDA3937_RS03660 0.30 -0.5 808,313 + DDA3937_RS03660 0.34 +0.3 808,313 + DDA3937_RS03660 0.34 -1.0 808,314 - DDA3937_RS03660 0.34 -1.3 808,314 - DDA3937_RS03660 0.34 +0.9 808,314 - DDA3937_RS03660 0.34 +0.1 808,314 - DDA3937_RS03660 0.34 -1.2 808,314 - DDA3937_RS03660 0.34 -1.1 808,314 - DDA3937_RS03660 0.34 -0.1 808,314 - DDA3937_RS03660 0.34 +1.5 808,314 - DDA3937_RS03660 0.34 +1.5 808,577 + DDA3937_RS03660 0.67 -0.2 808,578 - DDA3937_RS03660 0.67 -0.3 808,667 + DDA3937_RS03660 0.78 -1.1 808,667 + DDA3937_RS03660 0.78 -0.0 808,668 - DDA3937_RS03660 0.78 +0.1 808,668 - DDA3937_RS03660 0.78 -0.2 808,668 - DDA3937_RS03660 0.78 -1.6 808,731 - +0.5 808,731 - DDA3937_RS03660 0.86 +1.5 808,731 - DDA3937_RS03660 0.86 +0.3 808,795 + -2.2 808,795 + -0.9 808,795 + -1.3 808,796 - +0.2 808,796 - -0.3 808,796 - -0.8 808,806 + -1.3 808,818 + -2.1 808,818 + -1.1 808,818 + +0.9 808,818 + -2.5 808,818 + +0.8 808,818 + -0.1 808,818 + -1.3 808,819 - -0.5 808,819 - +0.3 808,819 - +0.9 808,819 - +0.2 808,870 + -2.4 808,947 + -0.7 808,960 + -0.7 808,961 - +1.5
Or see this region's nucleotide sequence