Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03640 and DDA3937_RS03645 are separated by 82 nucleotides DDA3937_RS03645 and DDA3937_RS03650 are separated by 43 nucleotides
DDA3937_RS03640: DDA3937_RS03640 - iron-containing alcohol dehydrogenase, at 803,090 to 804,244
_RS03640
DDA3937_RS03645: DDA3937_RS03645 - APC family permease, at 804,327 to 805,748
_RS03645
DDA3937_RS03650: DDA3937_RS03650 - MFS transporter, at 805,792 to 806,967
_RS03650
Position (kb) 804
805
806 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 803.426 kb on - strand, within DDA3937_RS03640 at 803.426 kb on - strand, within DDA3937_RS03640 at 803.426 kb on - strand, within DDA3937_RS03640 at 803.444 kb on + strand, within DDA3937_RS03640 at 803.444 kb on + strand, within DDA3937_RS03640 at 803.656 kb on + strand, within DDA3937_RS03640 at 803.705 kb on + strand, within DDA3937_RS03640 at 803.705 kb on + strand, within DDA3937_RS03640 at 803.705 kb on + strand, within DDA3937_RS03640 at 803.706 kb on - strand at 803.706 kb on - strand, within DDA3937_RS03640 at 803.706 kb on - strand, within DDA3937_RS03640 at 803.903 kb on + strand, within DDA3937_RS03640 at 803.903 kb on + strand, within DDA3937_RS03640 at 803.904 kb on - strand, within DDA3937_RS03640 at 803.904 kb on - strand, within DDA3937_RS03640 at 804.075 kb on + strand, within DDA3937_RS03640 at 804.076 kb on - strand, within DDA3937_RS03640 at 804.076 kb on - strand, within DDA3937_RS03640 at 804.242 kb on + strand at 804.242 kb on + strand at 804.242 kb on + strand at 804.243 kb on - strand at 804.250 kb on + strand at 804.250 kb on + strand at 804.250 kb on + strand at 804.250 kb on + strand at 804.250 kb on + strand at 804.250 kb on + strand at 804.250 kb on + strand at 804.250 kb on + strand at 804.251 kb on - strand at 804.251 kb on - strand at 804.251 kb on - strand at 804.251 kb on - strand at 804.251 kb on - strand at 804.251 kb on - strand at 804.253 kb on - strand at 804.253 kb on - strand at 804.474 kb on + strand, within DDA3937_RS03645 at 804.474 kb on + strand, within DDA3937_RS03645 at 804.474 kb on + strand, within DDA3937_RS03645 at 804.474 kb on + strand, within DDA3937_RS03645 at 804.474 kb on + strand, within DDA3937_RS03645 at 804.474 kb on + strand, within DDA3937_RS03645 at 804.474 kb on + strand, within DDA3937_RS03645 at 804.474 kb on + strand, within DDA3937_RS03645 at 804.474 kb on + strand, within DDA3937_RS03645 at 804.474 kb on + strand, within DDA3937_RS03645 at 804.474 kb on + strand, within DDA3937_RS03645 at 804.475 kb on - strand, within DDA3937_RS03645 at 804.475 kb on - strand, within DDA3937_RS03645 at 804.475 kb on - strand, within DDA3937_RS03645 at 804.475 kb on - strand, within DDA3937_RS03645 at 804.475 kb on - strand, within DDA3937_RS03645 at 804.475 kb on - strand, within DDA3937_RS03645 at 804.475 kb on - strand, within DDA3937_RS03645 at 804.475 kb on - strand, within DDA3937_RS03645 at 804.475 kb on - strand, within DDA3937_RS03645 at 804.475 kb on - strand, within DDA3937_RS03645 at 804.475 kb on - strand, within DDA3937_RS03645 at 804.475 kb on - strand, within DDA3937_RS03645 at 804.475 kb on - strand, within DDA3937_RS03645 at 804.475 kb on - strand, within DDA3937_RS03645 at 804.475 kb on - strand, within DDA3937_RS03645 at 804.516 kb on + strand, within DDA3937_RS03645 at 804.516 kb on + strand, within DDA3937_RS03645 at 804.516 kb on + strand, within DDA3937_RS03645 at 804.517 kb on - strand, within DDA3937_RS03645 at 804.517 kb on - strand, within DDA3937_RS03645 at 804.517 kb on - strand, within DDA3937_RS03645 at 804.517 kb on - strand, within DDA3937_RS03645 at 804.519 kb on - strand, within DDA3937_RS03645 at 804.534 kb on + strand at 804.535 kb on - strand, within DDA3937_RS03645 at 804.559 kb on - strand, within DDA3937_RS03645 at 804.564 kb on + strand, within DDA3937_RS03645 at 804.564 kb on + strand, within DDA3937_RS03645 at 804.564 kb on + strand, within DDA3937_RS03645 at 804.564 kb on + strand, within DDA3937_RS03645 at 804.565 kb on - strand, within DDA3937_RS03645 at 804.565 kb on - strand, within DDA3937_RS03645 at 804.565 kb on - strand, within DDA3937_RS03645 at 804.565 kb on - strand, within DDA3937_RS03645 at 804.565 kb on - strand, within DDA3937_RS03645 at 804.627 kb on + strand, within DDA3937_RS03645 at 804.627 kb on + strand, within DDA3937_RS03645 at 804.681 kb on + strand, within DDA3937_RS03645 at 804.681 kb on + strand, within DDA3937_RS03645 at 804.681 kb on + strand, within DDA3937_RS03645 at 804.681 kb on + strand, within DDA3937_RS03645 at 804.681 kb on + strand, within DDA3937_RS03645 at 804.681 kb on + strand, within DDA3937_RS03645 at 804.681 kb on + strand, within DDA3937_RS03645 at 804.681 kb on + strand, within DDA3937_RS03645 at 804.681 kb on + strand, within DDA3937_RS03645 at 804.681 kb on + strand, within DDA3937_RS03645 at 804.681 kb on + strand, within DDA3937_RS03645 at 804.682 kb on - strand, within DDA3937_RS03645 at 804.682 kb on - strand at 804.682 kb on - strand, within DDA3937_RS03645 at 804.682 kb on - strand, within DDA3937_RS03645 at 804.682 kb on - strand, within DDA3937_RS03645 at 804.682 kb on - strand, within DDA3937_RS03645 at 804.682 kb on - strand, within DDA3937_RS03645 at 804.723 kb on + strand, within DDA3937_RS03645 at 804.724 kb on - strand, within DDA3937_RS03645 at 804.724 kb on - strand, within DDA3937_RS03645 at 804.754 kb on - strand, within DDA3937_RS03645 at 804.754 kb on - strand, within DDA3937_RS03645 at 804.890 kb on + strand, within DDA3937_RS03645 at 804.978 kb on + strand, within DDA3937_RS03645 at 804.979 kb on - strand, within DDA3937_RS03645 at 805.013 kb on - strand, within DDA3937_RS03645 at 805.089 kb on + strand, within DDA3937_RS03645 at 805.090 kb on - strand, within DDA3937_RS03645 at 805.329 kb on + strand, within DDA3937_RS03645 at 805.329 kb on + strand, within DDA3937_RS03645 at 805.329 kb on + strand, within DDA3937_RS03645 at 805.329 kb on + strand, within DDA3937_RS03645 at 805.329 kb on + strand, within DDA3937_RS03645 at 805.330 kb on - strand, within DDA3937_RS03645 at 805.330 kb on - strand, within DDA3937_RS03645 at 805.369 kb on + strand, within DDA3937_RS03645 at 805.372 kb on + strand, within DDA3937_RS03645 at 805.372 kb on + strand, within DDA3937_RS03645 at 805.472 kb on - strand, within DDA3937_RS03645 at 805.641 kb on - strand at 805.641 kb on - strand at 805.731 kb on - strand at 805.731 kb on - strand at 805.731 kb on - strand at 805.780 kb on + strand at 805.802 kb on - strand at 805.850 kb on - strand at 805.953 kb on + strand, within DDA3937_RS03650 at 806.003 kb on + strand, within DDA3937_RS03650 at 806.004 kb on - strand, within DDA3937_RS03650 at 806.004 kb on - strand, within DDA3937_RS03650 at 806.027 kb on + strand, within DDA3937_RS03650 at 806.027 kb on + strand, within DDA3937_RS03650 at 806.027 kb on + strand, within DDA3937_RS03650 at 806.027 kb on + strand, within DDA3937_RS03650 at 806.027 kb on + strand, within DDA3937_RS03650 at 806.028 kb on - strand, within DDA3937_RS03650 at 806.028 kb on - strand, within DDA3937_RS03650 at 806.028 kb on - strand, within DDA3937_RS03650 at 806.045 kb on - strand, within DDA3937_RS03650 at 806.096 kb on + strand, within DDA3937_RS03650 at 806.154 kb on + strand, within DDA3937_RS03650 at 806.154 kb on + strand, within DDA3937_RS03650 at 806.343 kb on + strand, within DDA3937_RS03650 at 806.351 kb on + strand, within DDA3937_RS03650 at 806.351 kb on + strand, within DDA3937_RS03650 at 806.351 kb on + strand at 806.453 kb on - strand, within DDA3937_RS03650 at 806.684 kb on - strand, within DDA3937_RS03650 at 806.696 kb on + strand, within DDA3937_RS03650 at 806.696 kb on + strand, within DDA3937_RS03650 at 806.696 kb on + strand, within DDA3937_RS03650 at 806.697 kb on - strand, within DDA3937_RS03650
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 803,426 - DDA3937_RS03640 0.29 +0.8 803,426 - DDA3937_RS03640 0.29 -1.9 803,426 - DDA3937_RS03640 0.29 -0.8 803,444 + DDA3937_RS03640 0.31 -0.1 803,444 + DDA3937_RS03640 0.31 +0.0 803,656 + DDA3937_RS03640 0.49 -1.3 803,705 + DDA3937_RS03640 0.53 -1.1 803,705 + DDA3937_RS03640 0.53 -0.5 803,705 + DDA3937_RS03640 0.53 -0.8 803,706 - +2.5 803,706 - DDA3937_RS03640 0.53 -0.1 803,706 - DDA3937_RS03640 0.53 -1.2 803,903 + DDA3937_RS03640 0.70 -0.6 803,903 + DDA3937_RS03640 0.70 +0.7 803,904 - DDA3937_RS03640 0.70 -0.6 803,904 - DDA3937_RS03640 0.70 -1.1 804,075 + DDA3937_RS03640 0.85 -2.1 804,076 - DDA3937_RS03640 0.85 +0.9 804,076 - DDA3937_RS03640 0.85 -0.5 804,242 + -0.1 804,242 + -1.5 804,242 + -1.5 804,243 - +0.9 804,250 + -0.5 804,250 + -0.4 804,250 + -0.3 804,250 + -3.0 804,250 + +1.0 804,250 + -1.1 804,250 + +0.5 804,250 + -3.0 804,251 - -0.1 804,251 - -1.1 804,251 - +0.5 804,251 - -0.4 804,251 - -2.3 804,251 - -0.3 804,253 - -1.1 804,253 - +1.3 804,474 + DDA3937_RS03645 0.10 +0.8 804,474 + DDA3937_RS03645 0.10 -0.2 804,474 + DDA3937_RS03645 0.10 -1.6 804,474 + DDA3937_RS03645 0.10 +0.5 804,474 + DDA3937_RS03645 0.10 +6.7 804,474 + DDA3937_RS03645 0.10 -1.2 804,474 + DDA3937_RS03645 0.10 -1.2 804,474 + DDA3937_RS03645 0.10 -0.3 804,474 + DDA3937_RS03645 0.10 -0.2 804,474 + DDA3937_RS03645 0.10 +1.7 804,474 + DDA3937_RS03645 0.10 +0.8 804,475 - DDA3937_RS03645 0.10 -1.0 804,475 - DDA3937_RS03645 0.10 -2.4 804,475 - DDA3937_RS03645 0.10 -0.2 804,475 - DDA3937_RS03645 0.10 -2.7 804,475 - DDA3937_RS03645 0.10 -1.0 804,475 - DDA3937_RS03645 0.10 -0.6 804,475 - DDA3937_RS03645 0.10 +2.5 804,475 - DDA3937_RS03645 0.10 -0.8 804,475 - DDA3937_RS03645 0.10 +0.5 804,475 - DDA3937_RS03645 0.10 +0.2 804,475 - DDA3937_RS03645 0.10 +0.3 804,475 - DDA3937_RS03645 0.10 -0.5 804,475 - DDA3937_RS03645 0.10 +1.8 804,475 - DDA3937_RS03645 0.10 -0.5 804,475 - DDA3937_RS03645 0.10 -1.5 804,516 + DDA3937_RS03645 0.13 -0.5 804,516 + DDA3937_RS03645 0.13 -0.4 804,516 + DDA3937_RS03645 0.13 +0.8 804,517 - DDA3937_RS03645 0.13 -0.5 804,517 - DDA3937_RS03645 0.13 +2.9 804,517 - DDA3937_RS03645 0.13 -0.1 804,517 - DDA3937_RS03645 0.13 +0.2 804,519 - DDA3937_RS03645 0.14 -0.1 804,534 + +0.5 804,535 - DDA3937_RS03645 0.15 -0.4 804,559 - DDA3937_RS03645 0.16 -1.8 804,564 + DDA3937_RS03645 0.17 -0.3 804,564 + DDA3937_RS03645 0.17 +2.9 804,564 + DDA3937_RS03645 0.17 -0.1 804,564 + DDA3937_RS03645 0.17 -1.1 804,565 - DDA3937_RS03645 0.17 +0.1 804,565 - DDA3937_RS03645 0.17 +3.3 804,565 - DDA3937_RS03645 0.17 -1.1 804,565 - DDA3937_RS03645 0.17 -1.2 804,565 - DDA3937_RS03645 0.17 +1.5 804,627 + DDA3937_RS03645 0.21 -1.4 804,627 + DDA3937_RS03645 0.21 -1.9 804,681 + DDA3937_RS03645 0.25 -1.9 804,681 + DDA3937_RS03645 0.25 -0.1 804,681 + DDA3937_RS03645 0.25 +0.5 804,681 + DDA3937_RS03645 0.25 +0.4 804,681 + DDA3937_RS03645 0.25 +0.9 804,681 + DDA3937_RS03645 0.25 -0.5 804,681 + DDA3937_RS03645 0.25 +1.5 804,681 + DDA3937_RS03645 0.25 +0.8 804,681 + DDA3937_RS03645 0.25 +0.9 804,681 + DDA3937_RS03645 0.25 -0.1 804,681 + DDA3937_RS03645 0.25 +1.5 804,682 - DDA3937_RS03645 0.25 -0.6 804,682 - +0.9 804,682 - DDA3937_RS03645 0.25 -1.6 804,682 - DDA3937_RS03645 0.25 -1.2 804,682 - DDA3937_RS03645 0.25 -0.9 804,682 - DDA3937_RS03645 0.25 +0.5 804,682 - DDA3937_RS03645 0.25 -1.4 804,723 + DDA3937_RS03645 0.28 +0.3 804,724 - DDA3937_RS03645 0.28 -0.3 804,724 - DDA3937_RS03645 0.28 +1.2 804,754 - DDA3937_RS03645 0.30 +0.9 804,754 - DDA3937_RS03645 0.30 +1.1 804,890 + DDA3937_RS03645 0.40 -0.9 804,978 + DDA3937_RS03645 0.46 -0.5 804,979 - DDA3937_RS03645 0.46 -1.1 805,013 - DDA3937_RS03645 0.48 +1.7 805,089 + DDA3937_RS03645 0.54 -0.4 805,090 - DDA3937_RS03645 0.54 -1.1 805,329 + DDA3937_RS03645 0.70 -0.2 805,329 + DDA3937_RS03645 0.70 +0.5 805,329 + DDA3937_RS03645 0.70 -0.8 805,329 + DDA3937_RS03645 0.70 -0.2 805,329 + DDA3937_RS03645 0.70 -0.1 805,330 - DDA3937_RS03645 0.71 -2.4 805,330 - DDA3937_RS03645 0.71 -1.3 805,369 + DDA3937_RS03645 0.73 -0.4 805,372 + DDA3937_RS03645 0.73 +1.4 805,372 + DDA3937_RS03645 0.73 +0.9 805,472 - DDA3937_RS03645 0.81 -2.6 805,641 - -0.2 805,641 - -0.2 805,731 - -0.3 805,731 - +0.1 805,731 - -0.9 805,780 + -0.3 805,802 - -0.4 805,850 - +0.2 805,953 + DDA3937_RS03650 0.14 -1.8 806,003 + DDA3937_RS03650 0.18 -0.9 806,004 - DDA3937_RS03650 0.18 -1.5 806,004 - DDA3937_RS03650 0.18 +1.2 806,027 + DDA3937_RS03650 0.20 -0.1 806,027 + DDA3937_RS03650 0.20 -1.5 806,027 + DDA3937_RS03650 0.20 +1.2 806,027 + DDA3937_RS03650 0.20 +0.1 806,027 + DDA3937_RS03650 0.20 -0.1 806,028 - DDA3937_RS03650 0.20 -1.7 806,028 - DDA3937_RS03650 0.20 -0.8 806,028 - DDA3937_RS03650 0.20 +0.1 806,045 - DDA3937_RS03650 0.22 -0.1 806,096 + DDA3937_RS03650 0.26 -0.8 806,154 + DDA3937_RS03650 0.31 -0.5 806,154 + DDA3937_RS03650 0.31 -0.3 806,343 + DDA3937_RS03650 0.47 -0.7 806,351 + DDA3937_RS03650 0.48 -1.1 806,351 + DDA3937_RS03650 0.48 -0.4 806,351 + +0.5 806,453 - DDA3937_RS03650 0.56 -0.2 806,684 - DDA3937_RS03650 0.76 -1.1 806,696 + DDA3937_RS03650 0.77 +0.4 806,696 + DDA3937_RS03650 0.77 -0.9 806,696 + DDA3937_RS03650 0.77 +1.5 806,697 - DDA3937_RS03650 0.77 +0.1
Or see this region's nucleotide sequence