Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03580 and DDA3937_RS03585 are separated by 149 nucleotides DDA3937_RS03585 and DDA3937_RS03590 are separated by 24 nucleotides DDA3937_RS03590 and DDA3937_RS03595 are separated by 96 nucleotides
DDA3937_RS03580: DDA3937_RS03580 - hypothetical protein, at 791,741 to 792,163
_RS03580
DDA3937_RS03585: DDA3937_RS03585 - GNAT family N-acetyltransferase, at 792,313 to 792,858
_RS03585
DDA3937_RS03590: DDA3937_RS03590 - LysE family transporter, at 792,883 to 793,506
_RS03590
DDA3937_RS03595: DDA3937_RS03595 - YnfC family lipoprotein, at 793,603 to 794,328
_RS03595
Position (kb) 792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 791.333 kb on + strand at 791.333 kb on + strand at 791.333 kb on + strand at 791.333 kb on + strand at 791.334 kb on - strand at 791.336 kb on + strand at 791.337 kb on - strand at 791.345 kb on - strand at 791.422 kb on + strand at 791.423 kb on - strand at 791.437 kb on - strand at 791.454 kb on + strand at 791.454 kb on + strand at 791.454 kb on + strand at 791.454 kb on + strand at 791.455 kb on - strand at 791.455 kb on - strand at 791.455 kb on - strand at 791.461 kb on - strand at 791.463 kb on + strand at 791.464 kb on - strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.475 kb on - strand at 791.475 kb on - strand at 791.475 kb on - strand at 791.475 kb on - strand at 791.475 kb on - strand at 791.476 kb on + strand at 791.476 kb on + strand at 791.476 kb on + strand at 791.476 kb on + strand at 791.476 kb on + strand at 791.477 kb on - strand at 791.477 kb on - strand at 791.477 kb on - strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.484 kb on - strand at 791.484 kb on - strand at 791.484 kb on - strand at 791.486 kb on + strand at 791.486 kb on + strand at 791.486 kb on + strand at 791.486 kb on + strand at 791.487 kb on - strand at 791.491 kb on + strand at 791.491 kb on + strand at 791.492 kb on - strand at 791.584 kb on - strand at 791.584 kb on - strand at 791.584 kb on - strand at 791.678 kb on + strand at 791.678 kb on + strand at 791.678 kb on + strand at 791.679 kb on - strand at 791.679 kb on - strand at 791.679 kb on - strand at 791.679 kb on - strand at 791.689 kb on + strand at 791.690 kb on - strand at 791.690 kb on - strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.741 kb on - strand at 791.741 kb on - strand at 791.775 kb on + strand at 791.776 kb on - strand at 791.801 kb on + strand, within DDA3937_RS03580 at 791.827 kb on + strand, within DDA3937_RS03580 at 791.827 kb on + strand, within DDA3937_RS03580 at 791.827 kb on + strand, within DDA3937_RS03580 at 791.827 kb on + strand, within DDA3937_RS03580 at 791.827 kb on + strand, within DDA3937_RS03580 at 791.828 kb on - strand, within DDA3937_RS03580 at 791.828 kb on - strand, within DDA3937_RS03580 at 791.828 kb on - strand, within DDA3937_RS03580 at 791.828 kb on - strand, within DDA3937_RS03580 at 791.852 kb on + strand, within DDA3937_RS03580 at 791.854 kb on + strand, within DDA3937_RS03580 at 791.854 kb on + strand, within DDA3937_RS03580 at 791.855 kb on - strand, within DDA3937_RS03580 at 791.855 kb on - strand, within DDA3937_RS03580 at 791.855 kb on - strand, within DDA3937_RS03580 at 791.855 kb on - strand, within DDA3937_RS03580 at 791.855 kb on - strand, within DDA3937_RS03580 at 791.872 kb on - strand, within DDA3937_RS03580 at 791.914 kb on + strand, within DDA3937_RS03580 at 791.914 kb on + strand, within DDA3937_RS03580 at 791.915 kb on - strand, within DDA3937_RS03580 at 791.915 kb on - strand, within DDA3937_RS03580 at 791.915 kb on - strand, within DDA3937_RS03580 at 791.915 kb on - strand, within DDA3937_RS03580 at 791.918 kb on + strand, within DDA3937_RS03580 at 791.918 kb on + strand, within DDA3937_RS03580 at 791.918 kb on + strand, within DDA3937_RS03580 at 791.918 kb on + strand, within DDA3937_RS03580 at 792.046 kb on - strand, within DDA3937_RS03580 at 792.107 kb on + strand, within DDA3937_RS03580 at 792.107 kb on + strand, within DDA3937_RS03580 at 792.108 kb on - strand, within DDA3937_RS03580 at 792.116 kb on + strand, within DDA3937_RS03580 at 792.116 kb on + strand, within DDA3937_RS03580 at 792.155 kb on + strand at 792.155 kb on + strand at 792.155 kb on + strand at 792.155 kb on + strand at 792.155 kb on + strand at 792.155 kb on + strand at 792.156 kb on - strand at 792.156 kb on - strand at 792.197 kb on + strand at 792.197 kb on + strand at 792.198 kb on - strand at 792.278 kb on + strand at 792.278 kb on + strand at 792.324 kb on + strand at 792.324 kb on + strand at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.483 kb on - strand, within DDA3937_RS03585 at 792.517 kb on + strand, within DDA3937_RS03585 at 792.517 kb on + strand, within DDA3937_RS03585 at 792.676 kb on - strand at 792.688 kb on - strand, within DDA3937_RS03585 at 792.701 kb on - strand, within DDA3937_RS03585 at 792.823 kb on + strand at 792.823 kb on + strand at 792.823 kb on + strand at 792.824 kb on - strand at 792.824 kb on - strand at 792.840 kb on + strand at 792.840 kb on + strand at 792.841 kb on - strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.855 kb on - strand at 792.855 kb on - strand at 792.855 kb on - strand at 792.855 kb on - strand at 792.855 kb on - strand at 792.856 kb on + strand at 792.856 kb on + strand at 792.856 kb on + strand at 792.857 kb on - strand at 792.857 kb on - strand at 792.884 kb on + strand at 792.884 kb on + strand at 792.884 kb on + strand at 792.965 kb on + strand, within DDA3937_RS03590 at 792.965 kb on + strand, within DDA3937_RS03590 at 792.966 kb on - strand, within DDA3937_RS03590 at 792.966 kb on - strand, within DDA3937_RS03590 at 793.058 kb on + strand, within DDA3937_RS03590 at 793.058 kb on + strand, within DDA3937_RS03590 at 793.058 kb on + strand, within DDA3937_RS03590 at 793.059 kb on - strand, within DDA3937_RS03590 at 793.059 kb on - strand, within DDA3937_RS03590 at 793.099 kb on + strand, within DDA3937_RS03590 at 793.100 kb on - strand, within DDA3937_RS03590 at 793.247 kb on + strand, within DDA3937_RS03590 at 793.247 kb on + strand, within DDA3937_RS03590 at 793.247 kb on + strand, within DDA3937_RS03590 at 793.247 kb on + strand, within DDA3937_RS03590 at 793.247 kb on + strand, within DDA3937_RS03590 at 793.248 kb on - strand, within DDA3937_RS03590 at 793.248 kb on - strand, within DDA3937_RS03590 at 793.248 kb on - strand, within DDA3937_RS03590 at 793.248 kb on - strand, within DDA3937_RS03590 at 793.249 kb on + strand, within DDA3937_RS03590 at 793.249 kb on + strand, within DDA3937_RS03590 at 793.249 kb on + strand, within DDA3937_RS03590 at 793.250 kb on - strand, within DDA3937_RS03590 at 793.250 kb on - strand, within DDA3937_RS03590 at 793.250 kb on - strand, within DDA3937_RS03590 at 793.250 kb on - strand, within DDA3937_RS03590 at 793.256 kb on + strand, within DDA3937_RS03590 at 793.256 kb on + strand, within DDA3937_RS03590 at 793.257 kb on - strand, within DDA3937_RS03590 at 793.257 kb on - strand, within DDA3937_RS03590 at 793.386 kb on + strand, within DDA3937_RS03590 at 793.386 kb on + strand, within DDA3937_RS03590 at 793.386 kb on + strand, within DDA3937_RS03590 at 793.386 kb on + strand, within DDA3937_RS03590 at 793.386 kb on + strand, within DDA3937_RS03590 at 793.387 kb on - strand, within DDA3937_RS03590 at 793.414 kb on - strand, within DDA3937_RS03590 at 793.486 kb on - strand at 793.492 kb on + strand at 793.492 kb on + strand at 793.493 kb on - strand at 793.535 kb on + strand at 793.535 kb on + strand at 793.535 kb on + strand at 793.535 kb on + strand at 793.535 kb on + strand at 793.535 kb on + strand at 793.536 kb on - strand at 793.541 kb on + strand at 793.603 kb on - strand at 793.603 kb on - strand at 793.603 kb on - strand at 793.611 kb on - strand at 793.637 kb on + strand at 793.637 kb on + strand at 793.637 kb on + strand at 793.640 kb on + strand at 793.640 kb on + strand at 793.641 kb on - strand at 793.750 kb on - strand, within DDA3937_RS03595 at 793.789 kb on + strand, within DDA3937_RS03595 at 793.789 kb on + strand, within DDA3937_RS03595 at 793.789 kb on + strand, within DDA3937_RS03595 at 793.790 kb on - strand, within DDA3937_RS03595 at 793.790 kb on - strand, within DDA3937_RS03595 at 793.790 kb on - strand, within DDA3937_RS03595 at 793.840 kb on + strand, within DDA3937_RS03595 at 793.840 kb on + strand, within DDA3937_RS03595 at 793.840 kb on + strand, within DDA3937_RS03595 at 793.840 kb on + strand, within DDA3937_RS03595 at 793.841 kb on - strand, within DDA3937_RS03595 at 793.841 kb on - strand, within DDA3937_RS03595
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 791,333 + +0.1 791,333 + +1.0 791,333 + -1.6 791,333 + -0.5 791,334 - +1.0 791,336 + +0.8 791,337 - -0.2 791,345 - +0.2 791,422 + -0.8 791,423 - +0.0 791,437 - -0.3 791,454 + -1.5 791,454 + -1.1 791,454 + +0.5 791,454 + -1.5 791,455 - +0.5 791,455 - -1.0 791,455 - +1.9 791,461 - +0.2 791,463 + -0.5 791,464 - -0.4 791,474 + +2.0 791,474 + -0.0 791,474 + +0.4 791,474 + -1.3 791,474 + -1.5 791,474 + -0.3 791,474 + -0.4 791,475 - +0.6 791,475 - -0.0 791,475 - -0.7 791,475 - -1.6 791,475 - -0.1 791,476 + -0.6 791,476 + -1.4 791,476 + -0.3 791,476 + -1.3 791,476 + +1.5 791,477 - -0.9 791,477 - -0.2 791,477 - -0.9 791,483 + +0.3 791,483 + +0.2 791,483 + -1.3 791,483 + -2.1 791,483 + +0.7 791,483 + -1.0 791,483 + +2.5 791,484 - -0.6 791,484 - -1.0 791,484 - +1.5 791,486 + -0.3 791,486 + -2.2 791,486 + -2.5 791,486 + +0.3 791,487 - -1.3 791,491 + -1.5 791,491 + -0.3 791,492 - -0.9 791,584 - +1.1 791,584 - +1.1 791,584 - -0.9 791,678 + +2.9 791,678 + +0.1 791,678 + +0.1 791,679 - -1.5 791,679 - +0.8 791,679 - +0.4 791,679 - +0.5 791,689 + -1.0 791,690 - -0.5 791,690 - +0.8 791,740 + +1.1 791,740 + +0.3 791,740 + -3.0 791,740 + -0.5 791,740 + +0.2 791,740 + -1.2 791,740 + -1.3 791,741 - -0.6 791,741 - +1.5 791,775 + -2.0 791,776 - -0.8 791,801 + DDA3937_RS03580 0.14 +0.3 791,827 + DDA3937_RS03580 0.20 -0.7 791,827 + DDA3937_RS03580 0.20 -1.4 791,827 + DDA3937_RS03580 0.20 -2.5 791,827 + DDA3937_RS03580 0.20 -0.8 791,827 + DDA3937_RS03580 0.20 -0.8 791,828 - DDA3937_RS03580 0.21 -0.2 791,828 - DDA3937_RS03580 0.21 -1.7 791,828 - DDA3937_RS03580 0.21 -0.9 791,828 - DDA3937_RS03580 0.21 -0.0 791,852 + DDA3937_RS03580 0.26 -1.1 791,854 + DDA3937_RS03580 0.27 -0.7 791,854 + DDA3937_RS03580 0.27 -0.4 791,855 - DDA3937_RS03580 0.27 -1.0 791,855 - DDA3937_RS03580 0.27 +4.4 791,855 - DDA3937_RS03580 0.27 +0.3 791,855 - DDA3937_RS03580 0.27 +0.2 791,855 - DDA3937_RS03580 0.27 +0.4 791,872 - DDA3937_RS03580 0.31 -0.0 791,914 + DDA3937_RS03580 0.41 -0.3 791,914 + DDA3937_RS03580 0.41 +1.6 791,915 - DDA3937_RS03580 0.41 -1.5 791,915 - DDA3937_RS03580 0.41 -1.0 791,915 - DDA3937_RS03580 0.41 -0.8 791,915 - DDA3937_RS03580 0.41 +0.8 791,918 + DDA3937_RS03580 0.42 +0.1 791,918 + DDA3937_RS03580 0.42 +0.5 791,918 + DDA3937_RS03580 0.42 +1.1 791,918 + DDA3937_RS03580 0.42 -0.5 792,046 - DDA3937_RS03580 0.72 -0.5 792,107 + DDA3937_RS03580 0.87 +1.3 792,107 + DDA3937_RS03580 0.87 +0.4 792,108 - DDA3937_RS03580 0.87 +2.3 792,116 + DDA3937_RS03580 0.89 -0.0 792,116 + DDA3937_RS03580 0.89 -1.2 792,155 + +0.2 792,155 + -0.3 792,155 + -2.0 792,155 + +0.4 792,155 + -0.0 792,155 + +0.1 792,156 - -3.0 792,156 - -0.3 792,197 + -0.5 792,197 + -2.0 792,198 - +1.1 792,278 + +1.0 792,278 + -1.1 792,324 + +0.1 792,324 + +1.3 792,400 - DDA3937_RS03585 0.16 -1.6 792,400 - DDA3937_RS03585 0.16 -2.2 792,400 - DDA3937_RS03585 0.16 -1.2 792,400 - DDA3937_RS03585 0.16 -1.4 792,400 - DDA3937_RS03585 0.16 -0.9 792,400 - DDA3937_RS03585 0.16 -0.8 792,400 - DDA3937_RS03585 0.16 -2.2 792,400 - DDA3937_RS03585 0.16 -0.6 792,400 - DDA3937_RS03585 0.16 -2.2 792,400 - DDA3937_RS03585 0.16 +0.7 792,483 - DDA3937_RS03585 0.31 -2.1 792,517 + DDA3937_RS03585 0.37 -0.8 792,517 + DDA3937_RS03585 0.37 +0.1 792,676 - -1.0 792,688 - DDA3937_RS03585 0.69 +0.4 792,701 - DDA3937_RS03585 0.71 -1.6 792,823 + -1.0 792,823 + +0.5 792,823 + -1.0 792,824 - -0.6 792,824 - +0.4 792,840 + -0.6 792,840 + +1.4 792,841 - +2.9 792,854 + -0.5 792,854 + +0.1 792,854 + +2.4 792,854 + -0.0 792,854 + -0.6 792,854 + +0.5 792,854 + -1.6 792,855 - -0.8 792,855 - +0.7 792,855 - +1.3 792,855 - -1.3 792,855 - +2.5 792,856 + +0.5 792,856 + -1.0 792,856 + -0.5 792,857 - -1.4 792,857 - -1.6 792,884 + -1.6 792,884 + +0.7 792,884 + -2.3 792,965 + DDA3937_RS03590 0.13 -0.8 792,965 + DDA3937_RS03590 0.13 +0.3 792,966 - DDA3937_RS03590 0.13 -0.8 792,966 - DDA3937_RS03590 0.13 +0.9 793,058 + DDA3937_RS03590 0.28 -1.0 793,058 + DDA3937_RS03590 0.28 +0.8 793,058 + DDA3937_RS03590 0.28 -0.4 793,059 - DDA3937_RS03590 0.28 +0.1 793,059 - DDA3937_RS03590 0.28 +1.5 793,099 + DDA3937_RS03590 0.35 +0.4 793,100 - DDA3937_RS03590 0.35 -0.7 793,247 + DDA3937_RS03590 0.58 -0.1 793,247 + DDA3937_RS03590 0.58 +0.8 793,247 + DDA3937_RS03590 0.58 -0.4 793,247 + DDA3937_RS03590 0.58 -0.7 793,247 + DDA3937_RS03590 0.58 -0.9 793,248 - DDA3937_RS03590 0.58 +1.3 793,248 - DDA3937_RS03590 0.58 +0.8 793,248 - DDA3937_RS03590 0.58 -1.0 793,248 - DDA3937_RS03590 0.58 -0.0 793,249 + DDA3937_RS03590 0.59 +0.6 793,249 + DDA3937_RS03590 0.59 -1.4 793,249 + DDA3937_RS03590 0.59 -1.3 793,250 - DDA3937_RS03590 0.59 -0.5 793,250 - DDA3937_RS03590 0.59 -0.5 793,250 - DDA3937_RS03590 0.59 -1.3 793,250 - DDA3937_RS03590 0.59 +0.6 793,256 + DDA3937_RS03590 0.60 -0.3 793,256 + DDA3937_RS03590 0.60 -1.2 793,257 - DDA3937_RS03590 0.60 -0.5 793,257 - DDA3937_RS03590 0.60 +0.3 793,386 + DDA3937_RS03590 0.81 -0.1 793,386 + DDA3937_RS03590 0.81 -0.9 793,386 + DDA3937_RS03590 0.81 -3.0 793,386 + DDA3937_RS03590 0.81 -0.8 793,386 + DDA3937_RS03590 0.81 +0.2 793,387 - DDA3937_RS03590 0.81 -1.2 793,414 - DDA3937_RS03590 0.85 +0.2 793,486 - -0.2 793,492 + -1.0 793,492 + +0.4 793,493 - -0.0 793,535 + +0.2 793,535 + -1.8 793,535 + +0.8 793,535 + +0.1 793,535 + -0.7 793,535 + +0.1 793,536 - -1.3 793,541 + -1.3 793,603 - -0.5 793,603 - +0.2 793,603 - -0.8 793,611 - +0.3 793,637 + +0.1 793,637 + -0.4 793,637 + -1.7 793,640 + -0.2 793,640 + +0.0 793,641 - -0.9 793,750 - DDA3937_RS03595 0.20 -2.2 793,789 + DDA3937_RS03595 0.26 -0.5 793,789 + DDA3937_RS03595 0.26 -0.1 793,789 + DDA3937_RS03595 0.26 -0.1 793,790 - DDA3937_RS03595 0.26 -0.1 793,790 - DDA3937_RS03595 0.26 -1.2 793,790 - DDA3937_RS03595 0.26 -0.6 793,840 + DDA3937_RS03595 0.33 -1.2 793,840 + DDA3937_RS03595 0.33 +0.1 793,840 + DDA3937_RS03595 0.33 +2.7 793,840 + DDA3937_RS03595 0.33 +1.1 793,841 - DDA3937_RS03595 0.33 -2.0 793,841 - DDA3937_RS03595 0.33 -0.8
Or see this region's nucleotide sequence