Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03460 and DDA3937_RS03465 are separated by 221 nucleotides DDA3937_RS03465 and DDA3937_RS03470 are separated by 46 nucleotides
DDA3937_RS03460: DDA3937_RS03460 - NCS2 family permease, at 756,258 to 757,625
_RS03460
DDA3937_RS03465: DDA3937_RS03465 - Na+/H+ antiporter, at 757,847 to 759,493
_RS03465
DDA3937_RS03470: DDA3937_RS03470 - cation/acetate symporter ActP, at 759,540 to 761,198
_RS03470
Position (kb) 757
758
759
760 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 756.952 kb on - strand, within DDA3937_RS03460 at 756.952 kb on - strand, within DDA3937_RS03460 at 757.233 kb on + strand, within DDA3937_RS03460 at 757.234 kb on - strand, within DDA3937_RS03460 at 757.339 kb on - strand, within DDA3937_RS03460 at 757.339 kb on - strand, within DDA3937_RS03460 at 757.339 kb on - strand, within DDA3937_RS03460 at 757.377 kb on + strand, within DDA3937_RS03460 at 757.377 kb on + strand at 757.377 kb on + strand, within DDA3937_RS03460 at 757.377 kb on + strand, within DDA3937_RS03460 at 757.377 kb on + strand, within DDA3937_RS03460 at 757.377 kb on + strand, within DDA3937_RS03460 at 757.377 kb on + strand, within DDA3937_RS03460 at 757.377 kb on + strand, within DDA3937_RS03460 at 757.377 kb on + strand, within DDA3937_RS03460 at 757.378 kb on - strand, within DDA3937_RS03460 at 757.378 kb on - strand, within DDA3937_RS03460 at 757.378 kb on - strand, within DDA3937_RS03460 at 757.378 kb on - strand, within DDA3937_RS03460 at 757.378 kb on - strand, within DDA3937_RS03460 at 757.378 kb on - strand, within DDA3937_RS03460 at 757.378 kb on - strand, within DDA3937_RS03460 at 757.481 kb on + strand, within DDA3937_RS03460 at 757.482 kb on - strand, within DDA3937_RS03460 at 757.482 kb on - strand, within DDA3937_RS03460 at 757.602 kb on + strand at 757.603 kb on - strand at 757.650 kb on - strand at 757.675 kb on + strand at 757.687 kb on - strand at 757.744 kb on - strand at 757.744 kb on - strand at 757.744 kb on - strand at 757.744 kb on - strand at 757.755 kb on - strand at 757.823 kb on + strand at 757.823 kb on + strand at 757.823 kb on + strand at 757.824 kb on - strand at 757.874 kb on - strand at 757.874 kb on - strand at 757.902 kb on + strand at 758.017 kb on + strand, within DDA3937_RS03465 at 758.089 kb on + strand, within DDA3937_RS03465 at 758.090 kb on - strand, within DDA3937_RS03465 at 758.090 kb on - strand, within DDA3937_RS03465 at 758.090 kb on - strand, within DDA3937_RS03465 at 758.090 kb on - strand, within DDA3937_RS03465 at 758.118 kb on + strand, within DDA3937_RS03465 at 758.151 kb on - strand, within DDA3937_RS03465 at 758.151 kb on - strand, within DDA3937_RS03465 at 758.154 kb on + strand, within DDA3937_RS03465 at 758.154 kb on + strand, within DDA3937_RS03465 at 758.155 kb on - strand, within DDA3937_RS03465 at 758.155 kb on - strand, within DDA3937_RS03465 at 758.155 kb on - strand, within DDA3937_RS03465 at 758.155 kb on - strand, within DDA3937_RS03465 at 758.155 kb on - strand, within DDA3937_RS03465 at 758.289 kb on + strand, within DDA3937_RS03465 at 758.374 kb on + strand, within DDA3937_RS03465 at 758.454 kb on - strand, within DDA3937_RS03465 at 758.459 kb on - strand, within DDA3937_RS03465 at 758.517 kb on + strand at 758.544 kb on - strand, within DDA3937_RS03465 at 758.605 kb on + strand, within DDA3937_RS03465 at 758.816 kb on + strand, within DDA3937_RS03465 at 758.817 kb on - strand, within DDA3937_RS03465 at 758.817 kb on - strand, within DDA3937_RS03465 at 758.817 kb on - strand, within DDA3937_RS03465 at 758.817 kb on - strand, within DDA3937_RS03465 at 758.817 kb on - strand, within DDA3937_RS03465 at 758.876 kb on + strand, within DDA3937_RS03465 at 758.877 kb on - strand, within DDA3937_RS03465 at 758.877 kb on - strand, within DDA3937_RS03465 at 758.877 kb on - strand, within DDA3937_RS03465 at 758.877 kb on - strand, within DDA3937_RS03465 at 758.880 kb on + strand, within DDA3937_RS03465 at 758.881 kb on - strand at 758.887 kb on + strand, within DDA3937_RS03465 at 758.887 kb on + strand, within DDA3937_RS03465 at 758.887 kb on + strand, within DDA3937_RS03465 at 758.912 kb on + strand, within DDA3937_RS03465 at 758.912 kb on + strand, within DDA3937_RS03465 at 758.913 kb on - strand, within DDA3937_RS03465 at 758.952 kb on + strand, within DDA3937_RS03465 at 759.115 kb on + strand, within DDA3937_RS03465 at 759.116 kb on - strand, within DDA3937_RS03465 at 759.116 kb on - strand, within DDA3937_RS03465 at 759.283 kb on + strand, within DDA3937_RS03465 at 759.283 kb on + strand, within DDA3937_RS03465 at 759.395 kb on + strand at 759.395 kb on + strand at 759.396 kb on - strand at 759.418 kb on + strand at 759.541 kb on + strand at 759.703 kb on + strand at 759.703 kb on + strand at 759.704 kb on - strand at 759.704 kb on - strand at 759.772 kb on - strand, within DDA3937_RS03470 at 759.835 kb on + strand, within DDA3937_RS03470 at 759.835 kb on + strand, within DDA3937_RS03470 at 759.835 kb on + strand, within DDA3937_RS03470 at 759.835 kb on + strand, within DDA3937_RS03470 at 759.835 kb on + strand, within DDA3937_RS03470 at 759.836 kb on - strand, within DDA3937_RS03470 at 759.836 kb on - strand, within DDA3937_RS03470 at 759.836 kb on - strand, within DDA3937_RS03470 at 759.863 kb on + strand, within DDA3937_RS03470 at 759.900 kb on - strand, within DDA3937_RS03470 at 759.900 kb on - strand, within DDA3937_RS03470 at 759.900 kb on - strand, within DDA3937_RS03470 at 759.964 kb on - strand, within DDA3937_RS03470 at 760.030 kb on + strand, within DDA3937_RS03470 at 760.031 kb on - strand, within DDA3937_RS03470 at 760.031 kb on - strand, within DDA3937_RS03470 at 760.031 kb on - strand, within DDA3937_RS03470 at 760.115 kb on + strand, within DDA3937_RS03470 at 760.116 kb on - strand, within DDA3937_RS03470 at 760.268 kb on - strand, within DDA3937_RS03470 at 760.268 kb on - strand, within DDA3937_RS03470 at 760.273 kb on + strand, within DDA3937_RS03470 at 760.273 kb on + strand, within DDA3937_RS03470 at 760.274 kb on - strand, within DDA3937_RS03470 at 760.350 kb on + strand, within DDA3937_RS03470 at 760.350 kb on + strand, within DDA3937_RS03470 at 760.350 kb on + strand, within DDA3937_RS03470 at 760.350 kb on + strand, within DDA3937_RS03470 at 760.350 kb on + strand, within DDA3937_RS03470 at 760.350 kb on + strand, within DDA3937_RS03470 at 760.350 kb on + strand, within DDA3937_RS03470 at 760.350 kb on + strand, within DDA3937_RS03470 at 760.350 kb on + strand, within DDA3937_RS03470 at 760.350 kb on + strand, within DDA3937_RS03470 at 760.350 kb on + strand, within DDA3937_RS03470 at 760.350 kb on + strand, within DDA3937_RS03470 at 760.350 kb on + strand, within DDA3937_RS03470 at 760.350 kb on + strand, within DDA3937_RS03470 at 760.350 kb on + strand, within DDA3937_RS03470 at 760.351 kb on - strand, within DDA3937_RS03470 at 760.351 kb on - strand, within DDA3937_RS03470 at 760.351 kb on - strand, within DDA3937_RS03470 at 760.351 kb on - strand, within DDA3937_RS03470 at 760.351 kb on - strand, within DDA3937_RS03470 at 760.351 kb on - strand, within DDA3937_RS03470 at 760.352 kb on + strand, within DDA3937_RS03470 at 760.352 kb on + strand, within DDA3937_RS03470 at 760.352 kb on + strand, within DDA3937_RS03470 at 760.353 kb on - strand, within DDA3937_RS03470 at 760.353 kb on - strand, within DDA3937_RS03470 at 760.353 kb on - strand, within DDA3937_RS03470 at 760.353 kb on - strand, within DDA3937_RS03470 at 760.448 kb on + strand, within DDA3937_RS03470
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 756,952 - DDA3937_RS03460 0.51 +0.6 756,952 - DDA3937_RS03460 0.51 +1.9 757,233 + DDA3937_RS03460 0.71 +0.1 757,234 - DDA3937_RS03460 0.71 -0.5 757,339 - DDA3937_RS03460 0.79 +0.6 757,339 - DDA3937_RS03460 0.79 -0.5 757,339 - DDA3937_RS03460 0.79 -1.1 757,377 + DDA3937_RS03460 0.82 +0.5 757,377 + +0.6 757,377 + DDA3937_RS03460 0.82 -0.4 757,377 + DDA3937_RS03460 0.82 -0.1 757,377 + DDA3937_RS03460 0.82 -0.7 757,377 + DDA3937_RS03460 0.82 -0.8 757,377 + DDA3937_RS03460 0.82 -0.2 757,377 + DDA3937_RS03460 0.82 -0.3 757,377 + DDA3937_RS03460 0.82 -1.0 757,378 - DDA3937_RS03460 0.82 -0.0 757,378 - DDA3937_RS03460 0.82 +0.1 757,378 - DDA3937_RS03460 0.82 +0.0 757,378 - DDA3937_RS03460 0.82 -0.8 757,378 - DDA3937_RS03460 0.82 +0.3 757,378 - DDA3937_RS03460 0.82 -1.6 757,378 - DDA3937_RS03460 0.82 +0.6 757,481 + DDA3937_RS03460 0.89 +1.1 757,482 - DDA3937_RS03460 0.89 -0.8 757,482 - DDA3937_RS03460 0.89 +2.3 757,602 + +0.3 757,603 - -0.5 757,650 - -1.2 757,675 + +0.5 757,687 - -0.7 757,744 - -0.5 757,744 - -1.6 757,744 - -0.7 757,744 - +0.2 757,755 - -0.7 757,823 + -1.7 757,823 + +2.1 757,823 + -1.0 757,824 - -1.1 757,874 - -1.7 757,874 - -0.4 757,902 + -2.8 758,017 + DDA3937_RS03465 0.10 +0.3 758,089 + DDA3937_RS03465 0.15 -1.7 758,090 - DDA3937_RS03465 0.15 +0.8 758,090 - DDA3937_RS03465 0.15 -1.9 758,090 - DDA3937_RS03465 0.15 -1.0 758,090 - DDA3937_RS03465 0.15 -2.5 758,118 + DDA3937_RS03465 0.16 -1.3 758,151 - DDA3937_RS03465 0.18 -0.7 758,151 - DDA3937_RS03465 0.18 -0.7 758,154 + DDA3937_RS03465 0.19 -2.3 758,154 + DDA3937_RS03465 0.19 -1.2 758,155 - DDA3937_RS03465 0.19 -0.9 758,155 - DDA3937_RS03465 0.19 -1.7 758,155 - DDA3937_RS03465 0.19 -0.6 758,155 - DDA3937_RS03465 0.19 -1.0 758,155 - DDA3937_RS03465 0.19 -2.4 758,289 + DDA3937_RS03465 0.27 -0.7 758,374 + DDA3937_RS03465 0.32 -0.7 758,454 - DDA3937_RS03465 0.37 -2.2 758,459 - DDA3937_RS03465 0.37 -0.3 758,517 + +1.6 758,544 - DDA3937_RS03465 0.42 -2.2 758,605 + DDA3937_RS03465 0.46 -1.5 758,816 + DDA3937_RS03465 0.59 -2.0 758,817 - DDA3937_RS03465 0.59 -1.1 758,817 - DDA3937_RS03465 0.59 -1.0 758,817 - DDA3937_RS03465 0.59 -0.7 758,817 - DDA3937_RS03465 0.59 -0.4 758,817 - DDA3937_RS03465 0.59 -2.3 758,876 + DDA3937_RS03465 0.62 -1.5 758,877 - DDA3937_RS03465 0.63 -1.0 758,877 - DDA3937_RS03465 0.63 -1.7 758,877 - DDA3937_RS03465 0.63 -1.6 758,877 - DDA3937_RS03465 0.63 -1.5 758,880 + DDA3937_RS03465 0.63 -1.9 758,881 - -0.4 758,887 + DDA3937_RS03465 0.63 -3.3 758,887 + DDA3937_RS03465 0.63 -0.8 758,887 + DDA3937_RS03465 0.63 -0.4 758,912 + DDA3937_RS03465 0.65 -2.6 758,912 + DDA3937_RS03465 0.65 -1.7 758,913 - DDA3937_RS03465 0.65 -2.4 758,952 + DDA3937_RS03465 0.67 -1.9 759,115 + DDA3937_RS03465 0.77 -1.3 759,116 - DDA3937_RS03465 0.77 -1.4 759,116 - DDA3937_RS03465 0.77 -2.3 759,283 + DDA3937_RS03465 0.87 +0.1 759,283 + DDA3937_RS03465 0.87 -1.0 759,395 + -0.7 759,395 + -2.1 759,396 - -0.7 759,418 + -2.9 759,541 + -1.4 759,703 + -0.1 759,703 + +1.3 759,704 - +0.4 759,704 - -0.1 759,772 - DDA3937_RS03470 0.14 -1.1 759,835 + DDA3937_RS03470 0.18 -0.1 759,835 + DDA3937_RS03470 0.18 +0.6 759,835 + DDA3937_RS03470 0.18 -0.8 759,835 + DDA3937_RS03470 0.18 -2.3 759,835 + DDA3937_RS03470 0.18 +0.3 759,836 - DDA3937_RS03470 0.18 +1.7 759,836 - DDA3937_RS03470 0.18 -0.7 759,836 - DDA3937_RS03470 0.18 -1.1 759,863 + DDA3937_RS03470 0.19 +0.8 759,900 - DDA3937_RS03470 0.22 -0.5 759,900 - DDA3937_RS03470 0.22 -2.4 759,900 - DDA3937_RS03470 0.22 +0.5 759,964 - DDA3937_RS03470 0.26 -0.3 760,030 + DDA3937_RS03470 0.30 +1.6 760,031 - DDA3937_RS03470 0.30 +1.9 760,031 - DDA3937_RS03470 0.30 +1.3 760,031 - DDA3937_RS03470 0.30 -0.3 760,115 + DDA3937_RS03470 0.35 +1.7 760,116 - DDA3937_RS03470 0.35 -0.6 760,268 - DDA3937_RS03470 0.44 -0.6 760,268 - DDA3937_RS03470 0.44 -0.5 760,273 + DDA3937_RS03470 0.44 -0.7 760,273 + DDA3937_RS03470 0.44 -0.7 760,274 - DDA3937_RS03470 0.44 +0.7 760,350 + DDA3937_RS03470 0.49 +2.0 760,350 + DDA3937_RS03470 0.49 -0.3 760,350 + DDA3937_RS03470 0.49 +2.5 760,350 + DDA3937_RS03470 0.49 +0.2 760,350 + DDA3937_RS03470 0.49 -0.2 760,350 + DDA3937_RS03470 0.49 -0.6 760,350 + DDA3937_RS03470 0.49 -1.7 760,350 + DDA3937_RS03470 0.49 -0.2 760,350 + DDA3937_RS03470 0.49 -1.1 760,350 + DDA3937_RS03470 0.49 +0.4 760,350 + DDA3937_RS03470 0.49 -0.3 760,350 + DDA3937_RS03470 0.49 -0.2 760,350 + DDA3937_RS03470 0.49 -0.5 760,350 + DDA3937_RS03470 0.49 -1.4 760,350 + DDA3937_RS03470 0.49 -1.8 760,351 - DDA3937_RS03470 0.49 +3.4 760,351 - DDA3937_RS03470 0.49 -1.2 760,351 - DDA3937_RS03470 0.49 +1.5 760,351 - DDA3937_RS03470 0.49 -0.1 760,351 - DDA3937_RS03470 0.49 -0.6 760,351 - DDA3937_RS03470 0.49 +2.7 760,352 + DDA3937_RS03470 0.49 +1.0 760,352 + DDA3937_RS03470 0.49 -0.2 760,352 + DDA3937_RS03470 0.49 +2.5 760,353 - DDA3937_RS03470 0.49 -0.4 760,353 - DDA3937_RS03470 0.49 +1.0 760,353 - DDA3937_RS03470 0.49 -0.5 760,353 - DDA3937_RS03470 0.49 -1.9 760,448 + DDA3937_RS03470 0.55 -0.7
Or see this region's nucleotide sequence