Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03445 and DDA3937_RS03450 are separated by 214 nucleotides DDA3937_RS03450 and DDA3937_RS03455 are separated by 257 nucleotides
DDA3937_RS03445: DDA3937_RS03445 - sugar ABC transporter permease, at 752,759 to 753,631
_RS03445
DDA3937_RS03450: DDA3937_RS03450 - TOBE domain-containing protein, at 753,846 to 754,274
_RS03450
DDA3937_RS03455: DDA3937_RS03455 - kdo(2)-lipid IV(A) palmitoleoyltransferase, at 754,532 to 755,452
_RS03455
Position (kb) 753
754
755 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 752.895 kb on + strand, within DDA3937_RS03445 at 752.895 kb on + strand, within DDA3937_RS03445 at 752.895 kb on + strand, within DDA3937_RS03445 at 752.895 kb on + strand, within DDA3937_RS03445 at 752.895 kb on + strand, within DDA3937_RS03445 at 752.896 kb on - strand, within DDA3937_RS03445 at 752.896 kb on - strand, within DDA3937_RS03445 at 752.898 kb on + strand, within DDA3937_RS03445 at 752.898 kb on + strand, within DDA3937_RS03445 at 752.898 kb on + strand, within DDA3937_RS03445 at 752.898 kb on + strand, within DDA3937_RS03445 at 752.898 kb on + strand, within DDA3937_RS03445 at 752.899 kb on - strand, within DDA3937_RS03445 at 752.899 kb on - strand, within DDA3937_RS03445 at 752.899 kb on - strand, within DDA3937_RS03445 at 752.973 kb on + strand, within DDA3937_RS03445 at 752.973 kb on + strand, within DDA3937_RS03445 at 752.973 kb on + strand, within DDA3937_RS03445 at 752.973 kb on + strand, within DDA3937_RS03445 at 752.974 kb on - strand, within DDA3937_RS03445 at 752.987 kb on - strand, within DDA3937_RS03445 at 752.989 kb on + strand, within DDA3937_RS03445 at 752.989 kb on + strand at 752.990 kb on - strand, within DDA3937_RS03445 at 753.068 kb on - strand, within DDA3937_RS03445 at 753.129 kb on + strand at 753.129 kb on + strand, within DDA3937_RS03445 at 753.129 kb on + strand, within DDA3937_RS03445 at 753.129 kb on + strand, within DDA3937_RS03445 at 753.129 kb on + strand, within DDA3937_RS03445 at 753.129 kb on + strand, within DDA3937_RS03445 at 753.130 kb on - strand, within DDA3937_RS03445 at 753.130 kb on - strand, within DDA3937_RS03445 at 753.130 kb on - strand, within DDA3937_RS03445 at 753.130 kb on - strand, within DDA3937_RS03445 at 753.130 kb on - strand, within DDA3937_RS03445 at 753.130 kb on - strand, within DDA3937_RS03445 at 753.130 kb on - strand, within DDA3937_RS03445 at 753.130 kb on - strand, within DDA3937_RS03445 at 753.130 kb on - strand, within DDA3937_RS03445 at 753.130 kb on - strand, within DDA3937_RS03445 at 753.130 kb on - strand, within DDA3937_RS03445 at 753.132 kb on + strand, within DDA3937_RS03445 at 753.149 kb on + strand, within DDA3937_RS03445 at 753.198 kb on + strand, within DDA3937_RS03445 at 753.198 kb on + strand, within DDA3937_RS03445 at 753.198 kb on + strand, within DDA3937_RS03445 at 753.199 kb on - strand, within DDA3937_RS03445 at 753.199 kb on - strand, within DDA3937_RS03445 at 753.199 kb on - strand, within DDA3937_RS03445 at 753.199 kb on - strand at 753.199 kb on - strand, within DDA3937_RS03445 at 753.199 kb on - strand, within DDA3937_RS03445 at 753.234 kb on + strand, within DDA3937_RS03445 at 753.234 kb on + strand, within DDA3937_RS03445 at 753.234 kb on + strand at 753.235 kb on - strand, within DDA3937_RS03445 at 753.235 kb on - strand, within DDA3937_RS03445 at 753.238 kb on - strand, within DDA3937_RS03445 at 753.238 kb on - strand, within DDA3937_RS03445 at 753.238 kb on - strand, within DDA3937_RS03445 at 753.269 kb on - strand, within DDA3937_RS03445 at 753.419 kb on - strand, within DDA3937_RS03445 at 753.419 kb on - strand, within DDA3937_RS03445 at 753.420 kb on + strand, within DDA3937_RS03445 at 753.420 kb on + strand, within DDA3937_RS03445 at 753.420 kb on + strand, within DDA3937_RS03445 at 753.420 kb on + strand, within DDA3937_RS03445 at 753.420 kb on + strand, within DDA3937_RS03445 at 753.421 kb on - strand, within DDA3937_RS03445 at 753.421 kb on - strand, within DDA3937_RS03445 at 753.421 kb on - strand, within DDA3937_RS03445 at 753.431 kb on - strand, within DDA3937_RS03445 at 753.518 kb on - strand, within DDA3937_RS03445 at 753.540 kb on + strand, within DDA3937_RS03445 at 753.540 kb on + strand, within DDA3937_RS03445 at 753.541 kb on - strand, within DDA3937_RS03445 at 753.555 kb on - strand at 753.641 kb on + strand at 753.642 kb on - strand at 753.677 kb on + strand at 753.677 kb on + strand at 753.677 kb on + strand at 753.677 kb on + strand at 753.677 kb on + strand at 753.678 kb on - strand at 753.678 kb on - strand at 753.678 kb on - strand at 753.678 kb on - strand at 753.693 kb on + strand at 753.694 kb on - strand at 753.743 kb on + strand at 753.748 kb on + strand at 753.748 kb on + strand at 753.770 kb on + strand at 753.813 kb on + strand at 753.814 kb on - strand at 753.819 kb on + strand at 753.820 kb on - strand at 753.820 kb on - strand at 753.824 kb on - strand at 753.832 kb on - strand at 753.845 kb on + strand at 753.845 kb on + strand at 753.846 kb on - strand at 753.846 kb on - strand at 753.925 kb on + strand, within DDA3937_RS03450 at 753.925 kb on + strand, within DDA3937_RS03450 at 753.926 kb on - strand, within DDA3937_RS03450 at 754.139 kb on + strand, within DDA3937_RS03450 at 754.139 kb on + strand, within DDA3937_RS03450 at 754.139 kb on + strand, within DDA3937_RS03450 at 754.140 kb on - strand, within DDA3937_RS03450 at 754.140 kb on - strand, within DDA3937_RS03450 at 754.140 kb on - strand, within DDA3937_RS03450 at 754.239 kb on - strand at 754.314 kb on + strand at 754.402 kb on - strand at 754.402 kb on - strand at 754.402 kb on - strand at 754.402 kb on - strand at 754.486 kb on + strand at 754.486 kb on + strand at 754.486 kb on + strand at 754.487 kb on - strand at 754.487 kb on - strand at 754.487 kb on - strand at 754.487 kb on - strand at 754.487 kb on - strand at 754.487 kb on - strand at 754.524 kb on + strand at 754.524 kb on + strand at 754.530 kb on + strand at 754.531 kb on - strand at 754.531 kb on - strand at 754.550 kb on - strand at 754.711 kb on + strand, within DDA3937_RS03455 at 754.927 kb on + strand, within DDA3937_RS03455 at 754.927 kb on + strand, within DDA3937_RS03455 at 754.985 kb on + strand, within DDA3937_RS03455 at 754.986 kb on - strand, within DDA3937_RS03455 at 755.002 kb on + strand, within DDA3937_RS03455 at 755.002 kb on + strand, within DDA3937_RS03455 at 755.002 kb on + strand, within DDA3937_RS03455 at 755.002 kb on + strand, within DDA3937_RS03455 at 755.003 kb on - strand, within DDA3937_RS03455 at 755.003 kb on - strand, within DDA3937_RS03455 at 755.003 kb on - strand, within DDA3937_RS03455 at 755.085 kb on + strand, within DDA3937_RS03455 at 755.085 kb on + strand, within DDA3937_RS03455 at 755.086 kb on - strand, within DDA3937_RS03455 at 755.086 kb on - strand, within DDA3937_RS03455 at 755.086 kb on - strand, within DDA3937_RS03455 at 755.086 kb on - strand, within DDA3937_RS03455 at 755.113 kb on - strand, within DDA3937_RS03455
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 752,895 + DDA3937_RS03445 0.16 -0.7 752,895 + DDA3937_RS03445 0.16 +0.3 752,895 + DDA3937_RS03445 0.16 +0.2 752,895 + DDA3937_RS03445 0.16 +0.4 752,895 + DDA3937_RS03445 0.16 -0.7 752,896 - DDA3937_RS03445 0.16 -1.2 752,896 - DDA3937_RS03445 0.16 -1.6 752,898 + DDA3937_RS03445 0.16 -1.0 752,898 + DDA3937_RS03445 0.16 -0.9 752,898 + DDA3937_RS03445 0.16 +0.4 752,898 + DDA3937_RS03445 0.16 -0.3 752,898 + DDA3937_RS03445 0.16 -0.3 752,899 - DDA3937_RS03445 0.16 +0.2 752,899 - DDA3937_RS03445 0.16 +0.6 752,899 - DDA3937_RS03445 0.16 +0.4 752,973 + DDA3937_RS03445 0.25 -1.0 752,973 + DDA3937_RS03445 0.25 +0.0 752,973 + DDA3937_RS03445 0.25 -0.9 752,973 + DDA3937_RS03445 0.25 -1.5 752,974 - DDA3937_RS03445 0.25 +0.7 752,987 - DDA3937_RS03445 0.26 -1.2 752,989 + DDA3937_RS03445 0.26 +0.3 752,989 + +3.3 752,990 - DDA3937_RS03445 0.26 -0.2 753,068 - DDA3937_RS03445 0.35 -0.3 753,129 + -1.0 753,129 + DDA3937_RS03445 0.42 +0.7 753,129 + DDA3937_RS03445 0.42 +0.4 753,129 + DDA3937_RS03445 0.42 +0.5 753,129 + DDA3937_RS03445 0.42 -1.4 753,129 + DDA3937_RS03445 0.42 -0.0 753,130 - DDA3937_RS03445 0.42 -0.1 753,130 - DDA3937_RS03445 0.42 -0.9 753,130 - DDA3937_RS03445 0.42 +1.0 753,130 - DDA3937_RS03445 0.42 -0.9 753,130 - DDA3937_RS03445 0.42 -2.6 753,130 - DDA3937_RS03445 0.42 +1.5 753,130 - DDA3937_RS03445 0.42 -0.2 753,130 - DDA3937_RS03445 0.42 -1.7 753,130 - DDA3937_RS03445 0.42 +3.1 753,130 - DDA3937_RS03445 0.42 +0.6 753,130 - DDA3937_RS03445 0.42 +0.5 753,132 + DDA3937_RS03445 0.43 +0.5 753,149 + DDA3937_RS03445 0.45 -0.3 753,198 + DDA3937_RS03445 0.50 -0.1 753,198 + DDA3937_RS03445 0.50 +0.8 753,198 + DDA3937_RS03445 0.50 -0.9 753,199 - DDA3937_RS03445 0.50 +0.6 753,199 - DDA3937_RS03445 0.50 -0.7 753,199 - DDA3937_RS03445 0.50 -1.0 753,199 - -0.0 753,199 - DDA3937_RS03445 0.50 -0.2 753,199 - DDA3937_RS03445 0.50 +1.5 753,234 + DDA3937_RS03445 0.54 -0.1 753,234 + DDA3937_RS03445 0.54 -1.4 753,234 + +1.0 753,235 - DDA3937_RS03445 0.55 -1.0 753,235 - DDA3937_RS03445 0.55 -0.6 753,238 - DDA3937_RS03445 0.55 +0.8 753,238 - DDA3937_RS03445 0.55 +0.3 753,238 - DDA3937_RS03445 0.55 +0.6 753,269 - DDA3937_RS03445 0.58 +0.1 753,419 - DDA3937_RS03445 0.76 +1.3 753,419 - DDA3937_RS03445 0.76 -0.7 753,420 + DDA3937_RS03445 0.76 -0.5 753,420 + DDA3937_RS03445 0.76 -0.4 753,420 + DDA3937_RS03445 0.76 -0.2 753,420 + DDA3937_RS03445 0.76 -2.5 753,420 + DDA3937_RS03445 0.76 -0.0 753,421 - DDA3937_RS03445 0.76 +0.8 753,421 - DDA3937_RS03445 0.76 -0.2 753,421 - DDA3937_RS03445 0.76 -0.7 753,431 - DDA3937_RS03445 0.77 -0.1 753,518 - DDA3937_RS03445 0.87 -0.2 753,540 + DDA3937_RS03445 0.89 -0.5 753,540 + DDA3937_RS03445 0.89 +0.4 753,541 - DDA3937_RS03445 0.90 -2.9 753,555 - +0.6 753,641 + -1.6 753,642 - -0.3 753,677 + +0.1 753,677 + +0.2 753,677 + +0.5 753,677 + -0.3 753,677 + -0.0 753,678 - +0.4 753,678 - -1.2 753,678 - +0.4 753,678 - -1.5 753,693 + +0.1 753,694 - +1.0 753,743 + -0.8 753,748 + -0.2 753,748 + +1.1 753,770 + -0.0 753,813 + -0.4 753,814 - -0.2 753,819 + +0.2 753,820 - -1.0 753,820 - +0.6 753,824 - +3.8 753,832 - +0.4 753,845 + +0.4 753,845 + +0.1 753,846 - +0.2 753,846 - +0.2 753,925 + DDA3937_RS03450 0.18 -1.7 753,925 + DDA3937_RS03450 0.18 -0.7 753,926 - DDA3937_RS03450 0.19 -1.7 754,139 + DDA3937_RS03450 0.68 -0.4 754,139 + DDA3937_RS03450 0.68 -1.6 754,139 + DDA3937_RS03450 0.68 -0.9 754,140 - DDA3937_RS03450 0.69 -0.3 754,140 - DDA3937_RS03450 0.69 -1.1 754,140 - DDA3937_RS03450 0.69 +1.0 754,239 - -0.4 754,314 + -0.7 754,402 - -1.0 754,402 - -0.9 754,402 - -1.3 754,402 - -0.7 754,486 + -1.3 754,486 + -0.1 754,486 + -1.2 754,487 - -0.4 754,487 - -1.0 754,487 - -0.7 754,487 - -0.5 754,487 - +0.3 754,487 - +0.3 754,524 + +0.3 754,524 + +0.0 754,530 + -1.6 754,531 - -1.9 754,531 - -0.2 754,550 - -1.2 754,711 + DDA3937_RS03455 0.19 -0.1 754,927 + DDA3937_RS03455 0.43 -0.3 754,927 + DDA3937_RS03455 0.43 +0.5 754,985 + DDA3937_RS03455 0.49 +0.5 754,986 - DDA3937_RS03455 0.49 -0.4 755,002 + DDA3937_RS03455 0.51 +0.4 755,002 + DDA3937_RS03455 0.51 -0.1 755,002 + DDA3937_RS03455 0.51 -0.0 755,002 + DDA3937_RS03455 0.51 -0.7 755,003 - DDA3937_RS03455 0.51 +0.7 755,003 - DDA3937_RS03455 0.51 -0.9 755,003 - DDA3937_RS03455 0.51 +0.3 755,085 + DDA3937_RS03455 0.60 +0.2 755,085 + DDA3937_RS03455 0.60 -0.2 755,086 - DDA3937_RS03455 0.60 -0.7 755,086 - DDA3937_RS03455 0.60 +0.4 755,086 - DDA3937_RS03455 0.60 -1.2 755,086 - DDA3937_RS03455 0.60 -2.9 755,113 - DDA3937_RS03455 0.63 -1.9
Or see this region's nucleotide sequence