Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03365 and DDA3937_RS03370 are separated by 94 nucleotides DDA3937_RS03370 and DDA3937_RS03375 are separated by 387 nucleotides
DDA3937_RS03365: DDA3937_RS03365 - IS3 family transposase, at 733,923 to 735,022
_RS03365
DDA3937_RS03370: DDA3937_RS03370 - RelA/SpoT domain-containing protein, at 735,117 to 736,229
_RS03370
DDA3937_RS03375: DDA3937_RS03375 - efflux RND transporter periplasmic adaptor subunit, at 736,617 to 737,744
_RS03375
Position (kb) 735
736
737 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 734.240 kb on - strand, within DDA3937_RS03365 at 734.288 kb on + strand, within DDA3937_RS03365 at 734.288 kb on + strand, within DDA3937_RS03365 at 734.289 kb on - strand, within DDA3937_RS03365 at 734.289 kb on - strand, within DDA3937_RS03365 at 734.343 kb on + strand, within DDA3937_RS03365 at 734.363 kb on + strand, within DDA3937_RS03365 at 734.392 kb on - strand, within DDA3937_RS03365 at 734.438 kb on + strand, within DDA3937_RS03365 at 734.439 kb on - strand, within DDA3937_RS03365 at 734.601 kb on + strand, within DDA3937_RS03365 at 734.602 kb on - strand, within DDA3937_RS03365 at 734.609 kb on - strand, within DDA3937_RS03365 at 734.676 kb on + strand, within DDA3937_RS03365 at 734.677 kb on - strand at 734.677 kb on - strand, within DDA3937_RS03365 at 734.719 kb on + strand, within DDA3937_RS03365 at 734.720 kb on - strand, within DDA3937_RS03365 at 734.720 kb on - strand, within DDA3937_RS03365 at 734.746 kb on + strand, within DDA3937_RS03365 at 734.775 kb on - strand, within DDA3937_RS03365 at 734.833 kb on + strand, within DDA3937_RS03365 at 734.833 kb on + strand, within DDA3937_RS03365 at 734.845 kb on + strand, within DDA3937_RS03365 at 734.846 kb on - strand, within DDA3937_RS03365 at 734.889 kb on + strand, within DDA3937_RS03365 at 734.936 kb on + strand at 734.936 kb on + strand at 734.938 kb on + strand at 734.939 kb on - strand at 734.939 kb on - strand at 734.939 kb on - strand at 734.964 kb on + strand at 734.965 kb on - strand at 735.026 kb on - strand at 735.097 kb on + strand at 735.097 kb on + strand at 735.101 kb on + strand at 735.116 kb on - strand at 735.148 kb on - strand at 735.194 kb on - strand at 735.238 kb on - strand, within DDA3937_RS03370 at 735.253 kb on - strand, within DDA3937_RS03370 at 735.256 kb on - strand, within DDA3937_RS03370 at 735.345 kb on - strand, within DDA3937_RS03370 at 735.416 kb on + strand, within DDA3937_RS03370 at 735.426 kb on - strand, within DDA3937_RS03370 at 735.428 kb on + strand, within DDA3937_RS03370 at 735.429 kb on - strand, within DDA3937_RS03370 at 735.457 kb on - strand, within DDA3937_RS03370 at 735.461 kb on + strand, within DDA3937_RS03370 at 735.469 kb on - strand, within DDA3937_RS03370 at 735.474 kb on + strand, within DDA3937_RS03370 at 735.475 kb on - strand, within DDA3937_RS03370 at 735.486 kb on + strand, within DDA3937_RS03370 at 735.496 kb on - strand, within DDA3937_RS03370 at 735.496 kb on - strand, within DDA3937_RS03370 at 735.534 kb on + strand, within DDA3937_RS03370 at 735.534 kb on + strand, within DDA3937_RS03370 at 735.534 kb on + strand, within DDA3937_RS03370 at 735.535 kb on - strand, within DDA3937_RS03370 at 735.559 kb on - strand, within DDA3937_RS03370 at 735.561 kb on + strand, within DDA3937_RS03370 at 735.561 kb on + strand, within DDA3937_RS03370 at 735.561 kb on + strand, within DDA3937_RS03370 at 735.562 kb on - strand, within DDA3937_RS03370 at 735.562 kb on - strand, within DDA3937_RS03370 at 735.562 kb on - strand, within DDA3937_RS03370 at 735.574 kb on - strand at 735.582 kb on + strand, within DDA3937_RS03370 at 735.641 kb on + strand, within DDA3937_RS03370 at 735.753 kb on - strand, within DDA3937_RS03370 at 735.754 kb on + strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.825 kb on + strand, within DDA3937_RS03370 at 735.825 kb on + strand, within DDA3937_RS03370 at 735.856 kb on - strand, within DDA3937_RS03370 at 735.858 kb on + strand, within DDA3937_RS03370 at 735.859 kb on - strand, within DDA3937_RS03370 at 736.172 kb on + strand at 736.173 kb on - strand at 736.191 kb on + strand at 736.196 kb on + strand at 736.224 kb on - strand at 736.244 kb on + strand at 736.244 kb on + strand at 736.244 kb on + strand at 736.245 kb on - strand at 736.245 kb on - strand at 736.249 kb on + strand at 736.249 kb on + strand at 736.268 kb on + strand at 736.268 kb on + strand at 736.269 kb on - strand at 736.269 kb on - strand at 736.269 kb on - strand at 736.269 kb on - strand at 736.269 kb on - strand at 736.270 kb on + strand at 736.271 kb on - strand at 736.276 kb on + strand at 736.276 kb on + strand at 736.276 kb on + strand at 736.276 kb on + strand at 736.277 kb on - strand at 736.278 kb on + strand at 736.278 kb on + strand at 736.279 kb on - strand at 736.282 kb on + strand at 736.282 kb on + strand at 736.282 kb on + strand at 736.282 kb on + strand at 736.283 kb on - strand at 736.283 kb on - strand at 736.283 kb on - strand at 736.326 kb on + strand at 736.327 kb on - strand at 736.327 kb on - strand at 736.354 kb on + strand at 736.376 kb on - strand at 736.404 kb on + strand at 736.404 kb on + strand at 736.404 kb on + strand at 736.405 kb on - strand at 736.416 kb on + strand at 736.416 kb on + strand at 736.416 kb on + strand at 736.417 kb on - strand at 736.417 kb on - strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.423 kb on - strand at 736.423 kb on - strand at 736.423 kb on - strand at 736.423 kb on - strand at 736.423 kb on - strand at 736.444 kb on - strand at 736.454 kb on + strand at 736.454 kb on + strand at 736.454 kb on + strand at 736.454 kb on + strand at 736.455 kb on - strand at 736.455 kb on - strand at 736.455 kb on - strand at 736.455 kb on - strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.459 kb on - strand at 736.459 kb on - strand at 736.473 kb on + strand at 736.474 kb on - strand at 736.517 kb on + strand at 736.517 kb on + strand at 736.518 kb on - strand at 736.581 kb on + strand at 736.582 kb on - strand at 736.625 kb on - strand at 736.680 kb on + strand at 736.690 kb on - strand at 736.690 kb on - strand at 736.827 kb on - strand, within DDA3937_RS03375 at 736.868 kb on + strand, within DDA3937_RS03375 at 736.985 kb on + strand, within DDA3937_RS03375 at 737.034 kb on + strand at 737.034 kb on + strand, within DDA3937_RS03375 at 737.034 kb on + strand, within DDA3937_RS03375 at 737.035 kb on - strand, within DDA3937_RS03375 at 737.035 kb on - strand, within DDA3937_RS03375 at 737.035 kb on - strand, within DDA3937_RS03375 at 737.035 kb on - strand, within DDA3937_RS03375 at 737.036 kb on + strand, within DDA3937_RS03375 at 737.036 kb on + strand, within DDA3937_RS03375 at 737.082 kb on + strand, within DDA3937_RS03375 at 737.083 kb on - strand, within DDA3937_RS03375 at 737.083 kb on - strand, within DDA3937_RS03375 at 737.096 kb on + strand, within DDA3937_RS03375 at 737.097 kb on - strand, within DDA3937_RS03375 at 737.144 kb on + strand, within DDA3937_RS03375 at 737.144 kb on + strand, within DDA3937_RS03375 at 737.144 kb on + strand, within DDA3937_RS03375 at 737.155 kb on - strand, within DDA3937_RS03375
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 734,240 - DDA3937_RS03365 0.29 +0.2 734,288 + DDA3937_RS03365 0.33 -1.7 734,288 + DDA3937_RS03365 0.33 -1.4 734,289 - DDA3937_RS03365 0.33 +0.4 734,289 - DDA3937_RS03365 0.33 -0.7 734,343 + DDA3937_RS03365 0.38 -0.9 734,363 + DDA3937_RS03365 0.40 +2.5 734,392 - DDA3937_RS03365 0.43 +0.5 734,438 + DDA3937_RS03365 0.47 -1.1 734,439 - DDA3937_RS03365 0.47 -0.8 734,601 + DDA3937_RS03365 0.62 -0.3 734,602 - DDA3937_RS03365 0.62 -1.7 734,609 - DDA3937_RS03365 0.62 -1.0 734,676 + DDA3937_RS03365 0.68 +0.2 734,677 - -0.4 734,677 - DDA3937_RS03365 0.69 -0.3 734,719 + DDA3937_RS03365 0.72 -1.4 734,720 - DDA3937_RS03365 0.72 +1.0 734,720 - DDA3937_RS03365 0.72 -1.6 734,746 + DDA3937_RS03365 0.75 +0.7 734,775 - DDA3937_RS03365 0.77 -1.0 734,833 + DDA3937_RS03365 0.83 -0.3 734,833 + DDA3937_RS03365 0.83 +2.3 734,845 + DDA3937_RS03365 0.84 -0.1 734,846 - DDA3937_RS03365 0.84 -0.7 734,889 + DDA3937_RS03365 0.88 -0.9 734,936 + +2.3 734,936 + -0.1 734,938 + +1.0 734,939 - +0.6 734,939 - +1.1 734,939 - +0.8 734,964 + -0.9 734,965 - +0.6 735,026 - -2.5 735,097 + -1.4 735,097 + -0.7 735,101 + +1.1 735,116 - -0.9 735,148 - +0.9 735,194 - +1.3 735,238 - DDA3937_RS03370 0.11 +0.5 735,253 - DDA3937_RS03370 0.12 +1.6 735,256 - DDA3937_RS03370 0.12 +0.5 735,345 - DDA3937_RS03370 0.20 +0.0 735,416 + DDA3937_RS03370 0.27 -1.4 735,426 - DDA3937_RS03370 0.28 +1.0 735,428 + DDA3937_RS03370 0.28 -1.0 735,429 - DDA3937_RS03370 0.28 +1.6 735,457 - DDA3937_RS03370 0.31 +1.2 735,461 + DDA3937_RS03370 0.31 +0.8 735,469 - DDA3937_RS03370 0.32 +4.8 735,474 + DDA3937_RS03370 0.32 +0.5 735,475 - DDA3937_RS03370 0.32 -2.7 735,486 + DDA3937_RS03370 0.33 -1.4 735,496 - DDA3937_RS03370 0.34 +2.8 735,496 - DDA3937_RS03370 0.34 -0.3 735,534 + DDA3937_RS03370 0.37 -1.0 735,534 + DDA3937_RS03370 0.37 +1.6 735,534 + DDA3937_RS03370 0.37 -1.0 735,535 - DDA3937_RS03370 0.38 -1.4 735,559 - DDA3937_RS03370 0.40 +0.9 735,561 + DDA3937_RS03370 0.40 -0.6 735,561 + DDA3937_RS03370 0.40 -1.6 735,561 + DDA3937_RS03370 0.40 -1.6 735,562 - DDA3937_RS03370 0.40 +0.7 735,562 - DDA3937_RS03370 0.40 -1.2 735,562 - DDA3937_RS03370 0.40 -0.6 735,574 - +0.9 735,582 + DDA3937_RS03370 0.42 -0.7 735,641 + DDA3937_RS03370 0.47 -1.6 735,753 - DDA3937_RS03370 0.57 -1.3 735,754 + DDA3937_RS03370 0.57 -0.3 735,755 - DDA3937_RS03370 0.57 -0.8 735,755 - DDA3937_RS03370 0.57 +0.3 735,755 - DDA3937_RS03370 0.57 -1.4 735,755 - DDA3937_RS03370 0.57 +0.8 735,825 + DDA3937_RS03370 0.64 +1.8 735,825 + DDA3937_RS03370 0.64 -0.6 735,856 - DDA3937_RS03370 0.66 -1.3 735,858 + DDA3937_RS03370 0.67 -0.8 735,859 - DDA3937_RS03370 0.67 +0.0 736,172 + +0.2 736,173 - -0.5 736,191 + -0.3 736,196 + +0.6 736,224 - +0.4 736,244 + -0.2 736,244 + -0.5 736,244 + -0.1 736,245 - -1.2 736,245 - +0.6 736,249 + -0.5 736,249 + +0.8 736,268 + +2.0 736,268 + -1.5 736,269 - +1.1 736,269 - +1.9 736,269 - +1.0 736,269 - -0.4 736,269 - -1.9 736,270 + -0.8 736,271 - -0.5 736,276 + -0.7 736,276 + +1.2 736,276 + -0.7 736,276 + -1.4 736,277 - +0.6 736,278 + -0.7 736,278 + +2.3 736,279 - -1.8 736,282 + +0.1 736,282 + -0.7 736,282 + +0.2 736,282 + +0.4 736,283 - -1.0 736,283 - +2.9 736,283 - -0.8 736,326 + -0.6 736,327 - -1.2 736,327 - -1.3 736,354 + +0.5 736,376 - -0.4 736,404 + -0.5 736,404 + -0.9 736,404 + +1.4 736,405 - +0.3 736,416 + +0.0 736,416 + +0.0 736,416 + +0.0 736,417 - +1.1 736,417 - -0.9 736,418 + -1.3 736,418 + -1.7 736,418 + -0.5 736,418 + -0.5 736,418 + -0.1 736,418 + +0.0 736,418 + +0.2 736,419 - -0.2 736,419 - -0.9 736,419 - +0.0 736,419 - +0.5 736,419 - +0.4 736,419 - -1.0 736,423 - -0.5 736,423 - +0.2 736,423 - +1.4 736,423 - -0.1 736,423 - +1.6 736,444 - +0.7 736,454 + +1.6 736,454 + +0.0 736,454 + -0.9 736,454 + -0.7 736,455 - -0.7 736,455 - -2.0 736,455 - -1.0 736,455 - -1.7 736,458 + -1.0 736,458 + -0.5 736,458 + +0.2 736,458 + -1.7 736,458 + -2.1 736,458 + -2.6 736,459 - +0.4 736,459 - -0.1 736,473 + -0.9 736,474 - -0.4 736,517 + -1.0 736,517 + -1.4 736,518 - +0.2 736,581 + -1.8 736,582 - -0.3 736,625 - -1.0 736,680 + -1.1 736,690 - -1.0 736,690 - -0.3 736,827 - DDA3937_RS03375 0.19 -1.4 736,868 + DDA3937_RS03375 0.22 -1.8 736,985 + DDA3937_RS03375 0.33 +3.3 737,034 + +0.0 737,034 + DDA3937_RS03375 0.37 -1.1 737,034 + DDA3937_RS03375 0.37 +1.6 737,035 - DDA3937_RS03375 0.37 -0.6 737,035 - DDA3937_RS03375 0.37 +0.1 737,035 - DDA3937_RS03375 0.37 -0.9 737,035 - DDA3937_RS03375 0.37 -2.0 737,036 + DDA3937_RS03375 0.37 -1.0 737,036 + DDA3937_RS03375 0.37 +2.2 737,082 + DDA3937_RS03375 0.41 +0.8 737,083 - DDA3937_RS03375 0.41 -1.0 737,083 - DDA3937_RS03375 0.41 +0.4 737,096 + DDA3937_RS03375 0.42 +0.3 737,097 - DDA3937_RS03375 0.43 -0.5 737,144 + DDA3937_RS03375 0.47 -1.8 737,144 + DDA3937_RS03375 0.47 -0.5 737,144 + DDA3937_RS03375 0.47 -0.7 737,155 - DDA3937_RS03375 0.48 +0.3
Or see this region's nucleotide sequence