Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03245 and DDA3937_RS03250 are separated by 31 nucleotides DDA3937_RS03250 and DDA3937_RS03255 are separated by 112 nucleotides DDA3937_RS03255 and DDA3937_RS03260 are separated by 188 nucleotides DDA3937_RS03260 and DDA3937_RS03265 are separated by 69 nucleotides
DDA3937_RS03245: DDA3937_RS03245 - glycine cleavage system aminomethyltransferase GcvT, at 709,309 to 710,409
_RS03245
DDA3937_RS03250: DDA3937_RS03250 - glycine cleavage system protein GcvH, at 710,441 to 710,848
_RS03250
DDA3937_RS03255: DDA3937_RS03255 - aminomethyl-transferring glycine dehydrogenase, at 710,961 to 713,834
_RS03255
DDA3937_RS03260: DDA3937_RS03260 - LysE family translocator, at 714,023 to 714,673
_RS03260
DDA3937_RS03265: DDA3937_RS03265 - HD domain-containing protein, at 714,743 to 715,351
_RS03265
Position (kb) 710
711
712
713
714 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 710.139 kb on + strand, within DDA3937_RS03245 at 710.139 kb on + strand, within DDA3937_RS03245 at 710.140 kb on - strand, within DDA3937_RS03245 at 710.140 kb on - strand, within DDA3937_RS03245 at 710.215 kb on - strand, within DDA3937_RS03245 at 710.281 kb on - strand, within DDA3937_RS03245 at 710.323 kb on - strand at 710.468 kb on + strand at 710.468 kb on + strand at 710.468 kb on + strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.470 kb on + strand at 710.470 kb on + strand at 710.470 kb on + strand at 710.470 kb on + strand at 710.470 kb on + strand at 710.471 kb on - strand at 710.652 kb on - strand, within DDA3937_RS03250 at 710.652 kb on - strand, within DDA3937_RS03250 at 710.652 kb on - strand, within DDA3937_RS03250 at 710.673 kb on + strand, within DDA3937_RS03250 at 710.674 kb on - strand at 710.847 kb on - strand at 710.847 kb on - strand at 710.904 kb on + strand at 710.905 kb on - strand at 710.905 kb on - strand at 710.905 kb on - strand at 710.905 kb on - strand at 710.905 kb on - strand at 711.014 kb on + strand at 711.014 kb on + strand at 711.083 kb on + strand at 711.083 kb on + strand at 711.084 kb on - strand at 711.084 kb on - strand at 711.153 kb on + strand at 711.153 kb on + strand at 711.211 kb on - strand at 711.225 kb on + strand at 711.226 kb on - strand at 711.285 kb on + strand, within DDA3937_RS03255 at 711.285 kb on + strand, within DDA3937_RS03255 at 711.285 kb on + strand, within DDA3937_RS03255 at 711.286 kb on - strand, within DDA3937_RS03255 at 711.286 kb on - strand, within DDA3937_RS03255 at 711.286 kb on - strand, within DDA3937_RS03255 at 711.296 kb on + strand, within DDA3937_RS03255 at 711.296 kb on + strand, within DDA3937_RS03255 at 711.297 kb on - strand, within DDA3937_RS03255 at 711.297 kb on - strand, within DDA3937_RS03255 at 711.585 kb on + strand, within DDA3937_RS03255 at 711.585 kb on + strand, within DDA3937_RS03255 at 711.585 kb on + strand, within DDA3937_RS03255 at 711.586 kb on - strand, within DDA3937_RS03255 at 711.586 kb on - strand, within DDA3937_RS03255 at 711.604 kb on + strand, within DDA3937_RS03255 at 711.752 kb on + strand, within DDA3937_RS03255 at 711.752 kb on + strand, within DDA3937_RS03255 at 711.757 kb on + strand, within DDA3937_RS03255 at 711.757 kb on + strand, within DDA3937_RS03255 at 711.757 kb on + strand, within DDA3937_RS03255 at 711.758 kb on - strand, within DDA3937_RS03255 at 711.758 kb on - strand, within DDA3937_RS03255 at 711.838 kb on - strand, within DDA3937_RS03255 at 711.966 kb on - strand, within DDA3937_RS03255 at 711.966 kb on - strand, within DDA3937_RS03255 at 712.002 kb on + strand, within DDA3937_RS03255 at 712.002 kb on + strand, within DDA3937_RS03255 at 712.002 kb on + strand, within DDA3937_RS03255 at 712.002 kb on + strand, within DDA3937_RS03255 at 712.002 kb on + strand, within DDA3937_RS03255 at 712.002 kb on + strand, within DDA3937_RS03255 at 712.003 kb on - strand, within DDA3937_RS03255 at 712.003 kb on - strand, within DDA3937_RS03255 at 712.003 kb on - strand, within DDA3937_RS03255 at 712.003 kb on - strand, within DDA3937_RS03255 at 712.011 kb on + strand, within DDA3937_RS03255 at 712.011 kb on + strand, within DDA3937_RS03255 at 712.012 kb on - strand, within DDA3937_RS03255 at 712.050 kb on - strand, within DDA3937_RS03255 at 712.276 kb on + strand, within DDA3937_RS03255 at 712.558 kb on + strand, within DDA3937_RS03255 at 712.558 kb on + strand, within DDA3937_RS03255 at 712.559 kb on - strand, within DDA3937_RS03255 at 712.559 kb on - strand, within DDA3937_RS03255 at 712.644 kb on + strand, within DDA3937_RS03255 at 712.658 kb on + strand, within DDA3937_RS03255 at 712.658 kb on + strand, within DDA3937_RS03255 at 712.658 kb on + strand, within DDA3937_RS03255 at 712.658 kb on + strand, within DDA3937_RS03255 at 712.659 kb on - strand, within DDA3937_RS03255 at 712.659 kb on - strand, within DDA3937_RS03255 at 712.659 kb on - strand, within DDA3937_RS03255 at 712.690 kb on - strand, within DDA3937_RS03255 at 712.917 kb on + strand, within DDA3937_RS03255 at 712.917 kb on + strand, within DDA3937_RS03255 at 712.938 kb on + strand, within DDA3937_RS03255 at 712.938 kb on + strand, within DDA3937_RS03255 at 712.938 kb on + strand, within DDA3937_RS03255 at 712.939 kb on - strand, within DDA3937_RS03255 at 712.939 kb on - strand, within DDA3937_RS03255 at 712.939 kb on - strand, within DDA3937_RS03255 at 712.993 kb on + strand, within DDA3937_RS03255 at 712.993 kb on + strand, within DDA3937_RS03255 at 712.993 kb on + strand, within DDA3937_RS03255 at 712.994 kb on - strand, within DDA3937_RS03255 at 712.994 kb on - strand at 712.994 kb on - strand, within DDA3937_RS03255 at 712.996 kb on - strand, within DDA3937_RS03255 at 713.033 kb on + strand, within DDA3937_RS03255 at 713.034 kb on - strand, within DDA3937_RS03255 at 713.034 kb on - strand, within DDA3937_RS03255 at 713.034 kb on - strand, within DDA3937_RS03255 at 713.243 kb on + strand, within DDA3937_RS03255 at 713.265 kb on + strand, within DDA3937_RS03255 at 713.265 kb on + strand, within DDA3937_RS03255 at 713.266 kb on - strand, within DDA3937_RS03255 at 713.266 kb on - strand, within DDA3937_RS03255 at 713.331 kb on + strand, within DDA3937_RS03255 at 713.331 kb on + strand, within DDA3937_RS03255 at 713.331 kb on + strand, within DDA3937_RS03255 at 713.331 kb on + strand, within DDA3937_RS03255 at 713.332 kb on - strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.703 kb on + strand at 713.704 kb on - strand at 713.749 kb on - strand at 713.792 kb on + strand at 713.793 kb on - strand at 713.793 kb on - strand at 713.793 kb on - strand at 713.827 kb on - strand at 713.827 kb on - strand at 713.832 kb on + strand at 713.832 kb on + strand at 713.833 kb on - strand at 713.833 kb on - strand at 713.845 kb on + strand at 713.846 kb on - strand at 713.846 kb on - strand at 713.857 kb on - strand at 713.857 kb on - strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.952 kb on - strand at 713.952 kb on - strand at 714.027 kb on + strand at 714.040 kb on + strand at 714.041 kb on - strand at 714.041 kb on - strand at 714.053 kb on - strand at 714.106 kb on + strand, within DDA3937_RS03260 at 714.107 kb on - strand, within DDA3937_RS03260 at 714.242 kb on - strand, within DDA3937_RS03260 at 714.270 kb on - strand, within DDA3937_RS03260 at 714.270 kb on - strand, within DDA3937_RS03260 at 714.278 kb on + strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.280 kb on + strand, within DDA3937_RS03260 at 714.408 kb on + strand, within DDA3937_RS03260 at 714.408 kb on + strand, within DDA3937_RS03260 at 714.409 kb on - strand at 714.409 kb on - strand, within DDA3937_RS03260 at 714.409 kb on - strand, within DDA3937_RS03260 at 714.610 kb on + strand at 714.610 kb on + strand at 714.610 kb on + strand at 714.611 kb on - strand at 714.631 kb on + strand at 714.631 kb on + strand at 714.632 kb on - strand at 714.745 kb on - strand at 714.792 kb on + strand at 714.793 kb on - strand at 714.814 kb on + strand, within DDA3937_RS03265 at 714.814 kb on + strand, within DDA3937_RS03265 at 714.824 kb on - strand, within DDA3937_RS03265
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 710,139 + DDA3937_RS03245 0.75 +2.4 710,139 + DDA3937_RS03245 0.75 +2.9 710,140 - DDA3937_RS03245 0.75 +1.5 710,140 - DDA3937_RS03245 0.75 +0.3 710,215 - DDA3937_RS03245 0.82 +0.1 710,281 - DDA3937_RS03245 0.88 +0.0 710,323 - -0.3 710,468 + -3.2 710,468 + +0.1 710,468 + -0.4 710,469 - -0.2 710,469 - +1.0 710,469 - +0.1 710,469 - -1.4 710,469 - -0.5 710,469 - +1.6 710,469 - -0.5 710,469 - -1.3 710,469 - +0.2 710,470 + +0.0 710,470 + -1.9 710,470 + +0.6 710,470 + +0.7 710,470 + +1.3 710,471 - +0.3 710,652 - DDA3937_RS03250 0.52 -0.6 710,652 - DDA3937_RS03250 0.52 +0.0 710,652 - DDA3937_RS03250 0.52 -0.4 710,673 + DDA3937_RS03250 0.57 -0.1 710,674 - +2.6 710,847 - -0.8 710,847 - -1.0 710,904 + -0.7 710,905 - +1.4 710,905 - +0.5 710,905 - -0.1 710,905 - -0.9 710,905 - +1.1 711,014 + +0.0 711,014 + +2.0 711,083 + -0.6 711,083 + -0.5 711,084 - -2.0 711,084 - +0.6 711,153 + -0.8 711,153 + +2.7 711,211 - -0.7 711,225 + +0.5 711,226 - -0.5 711,285 + DDA3937_RS03255 0.11 -0.1 711,285 + DDA3937_RS03255 0.11 -1.8 711,285 + DDA3937_RS03255 0.11 -0.8 711,286 - DDA3937_RS03255 0.11 -0.3 711,286 - DDA3937_RS03255 0.11 +0.4 711,286 - DDA3937_RS03255 0.11 +0.6 711,296 + DDA3937_RS03255 0.12 -0.5 711,296 + DDA3937_RS03255 0.12 -0.6 711,297 - DDA3937_RS03255 0.12 +0.2 711,297 - DDA3937_RS03255 0.12 -1.0 711,585 + DDA3937_RS03255 0.22 +0.4 711,585 + DDA3937_RS03255 0.22 -1.1 711,585 + DDA3937_RS03255 0.22 +0.8 711,586 - DDA3937_RS03255 0.22 -2.1 711,586 - DDA3937_RS03255 0.22 -2.3 711,604 + DDA3937_RS03255 0.22 -0.5 711,752 + DDA3937_RS03255 0.28 +0.7 711,752 + DDA3937_RS03255 0.28 -3.7 711,757 + DDA3937_RS03255 0.28 -0.5 711,757 + DDA3937_RS03255 0.28 -0.2 711,757 + DDA3937_RS03255 0.28 -0.2 711,758 - DDA3937_RS03255 0.28 -1.8 711,758 - DDA3937_RS03255 0.28 -0.9 711,838 - DDA3937_RS03255 0.31 -0.1 711,966 - DDA3937_RS03255 0.35 -1.3 711,966 - DDA3937_RS03255 0.35 -1.1 712,002 + DDA3937_RS03255 0.36 -1.4 712,002 + DDA3937_RS03255 0.36 -3.0 712,002 + DDA3937_RS03255 0.36 -1.2 712,002 + DDA3937_RS03255 0.36 +0.2 712,002 + DDA3937_RS03255 0.36 -2.4 712,002 + DDA3937_RS03255 0.36 +4.2 712,003 - DDA3937_RS03255 0.36 -0.2 712,003 - DDA3937_RS03255 0.36 -1.3 712,003 - DDA3937_RS03255 0.36 +0.0 712,003 - DDA3937_RS03255 0.36 +0.6 712,011 + DDA3937_RS03255 0.37 -1.0 712,011 + DDA3937_RS03255 0.37 -0.7 712,012 - DDA3937_RS03255 0.37 -0.1 712,050 - DDA3937_RS03255 0.38 -0.4 712,276 + DDA3937_RS03255 0.46 -1.0 712,558 + DDA3937_RS03255 0.56 -0.9 712,558 + DDA3937_RS03255 0.56 +0.1 712,559 - DDA3937_RS03255 0.56 +1.9 712,559 - DDA3937_RS03255 0.56 -0.4 712,644 + DDA3937_RS03255 0.59 +0.7 712,658 + DDA3937_RS03255 0.59 -0.3 712,658 + DDA3937_RS03255 0.59 -1.7 712,658 + DDA3937_RS03255 0.59 -0.7 712,658 + DDA3937_RS03255 0.59 -0.2 712,659 - DDA3937_RS03255 0.59 -0.7 712,659 - DDA3937_RS03255 0.59 -2.8 712,659 - DDA3937_RS03255 0.59 -0.5 712,690 - DDA3937_RS03255 0.60 +1.0 712,917 + DDA3937_RS03255 0.68 -0.2 712,917 + DDA3937_RS03255 0.68 +0.8 712,938 + DDA3937_RS03255 0.69 -2.1 712,938 + DDA3937_RS03255 0.69 +0.2 712,938 + DDA3937_RS03255 0.69 +1.0 712,939 - DDA3937_RS03255 0.69 -1.3 712,939 - DDA3937_RS03255 0.69 -1.4 712,939 - DDA3937_RS03255 0.69 +0.0 712,993 + DDA3937_RS03255 0.71 +1.0 712,993 + DDA3937_RS03255 0.71 -0.6 712,993 + DDA3937_RS03255 0.71 -1.8 712,994 - DDA3937_RS03255 0.71 -1.9 712,994 - +0.6 712,994 - DDA3937_RS03255 0.71 +0.1 712,996 - DDA3937_RS03255 0.71 +0.1 713,033 + DDA3937_RS03255 0.72 +0.9 713,034 - DDA3937_RS03255 0.72 -0.7 713,034 - DDA3937_RS03255 0.72 -1.2 713,034 - DDA3937_RS03255 0.72 -0.4 713,243 + DDA3937_RS03255 0.79 +1.6 713,265 + DDA3937_RS03255 0.80 -1.4 713,265 + DDA3937_RS03255 0.80 +2.2 713,266 - DDA3937_RS03255 0.80 -0.1 713,266 - DDA3937_RS03255 0.80 +0.1 713,331 + DDA3937_RS03255 0.82 +0.6 713,331 + DDA3937_RS03255 0.82 -0.9 713,331 + DDA3937_RS03255 0.82 -0.0 713,331 + DDA3937_RS03255 0.82 -1.8 713,332 - DDA3937_RS03255 0.82 -0.4 713,370 + DDA3937_RS03255 0.84 -0.4 713,370 + DDA3937_RS03255 0.84 +0.9 713,370 + DDA3937_RS03255 0.84 -0.6 713,370 + DDA3937_RS03255 0.84 -0.6 713,370 + DDA3937_RS03255 0.84 -0.2 713,370 + DDA3937_RS03255 0.84 -0.4 713,371 - DDA3937_RS03255 0.84 -1.8 713,371 - DDA3937_RS03255 0.84 -1.1 713,371 - DDA3937_RS03255 0.84 +0.1 713,371 - DDA3937_RS03255 0.84 -0.5 713,371 - DDA3937_RS03255 0.84 -0.8 713,371 - DDA3937_RS03255 0.84 -0.4 713,371 - DDA3937_RS03255 0.84 +1.0 713,703 + -0.7 713,704 - -0.4 713,749 - +1.6 713,792 + -0.0 713,793 - +8.5 713,793 - +0.8 713,793 - -0.2 713,827 - +2.1 713,827 - +0.0 713,832 + +1.1 713,832 + -2.5 713,833 - +0.4 713,833 - +0.6 713,845 + -2.1 713,846 - +0.6 713,846 - +0.3 713,857 - +0.3 713,857 - -0.6 713,951 + -1.7 713,951 + -0.5 713,951 + -0.7 713,951 + -0.0 713,951 + +1.5 713,951 + -0.5 713,952 - +0.3 713,952 - -1.0 714,027 + +0.0 714,040 + +2.0 714,041 - +0.5 714,041 - -1.1 714,053 - -2.7 714,106 + DDA3937_RS03260 0.13 -1.2 714,107 - DDA3937_RS03260 0.13 +1.0 714,242 - DDA3937_RS03260 0.34 -0.7 714,270 - DDA3937_RS03260 0.38 +0.6 714,270 - DDA3937_RS03260 0.38 -1.0 714,278 + DDA3937_RS03260 0.39 -0.0 714,279 - DDA3937_RS03260 0.39 -0.5 714,279 - DDA3937_RS03260 0.39 -0.7 714,279 - DDA3937_RS03260 0.39 -2.5 714,279 - DDA3937_RS03260 0.39 -1.4 714,280 + DDA3937_RS03260 0.39 -0.6 714,408 + DDA3937_RS03260 0.59 -2.1 714,408 + DDA3937_RS03260 0.59 -0.8 714,409 - +1.6 714,409 - DDA3937_RS03260 0.59 +0.2 714,409 - DDA3937_RS03260 0.59 -1.0 714,610 + +1.5 714,610 + -0.7 714,610 + -0.8 714,611 - +0.0 714,631 + +0.1 714,631 + +3.8 714,632 - -0.9 714,745 - -2.3 714,792 + -2.0 714,793 - -1.0 714,814 + DDA3937_RS03265 0.12 -0.4 714,814 + DDA3937_RS03265 0.12 -0.1 714,824 - DDA3937_RS03265 0.13 -1.5
Or see this region's nucleotide sequence