Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03215

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03200 and DDA3937_RS03205 are separated by 116 nucleotidesDDA3937_RS03205 and DDA3937_RS03210 are separated by 32 nucleotidesDDA3937_RS03210 and DDA3937_RS03215 are separated by 55 nucleotidesDDA3937_RS03215 and DDA3937_RS03220 are separated by 110 nucleotidesDDA3937_RS03220 and DDA3937_RS03225 are separated by 128 nucleotides DDA3937_RS03200: DDA3937_RS03200 - LysR family transcriptional regulator, at 701,744 to 702,646 _RS03200 DDA3937_RS03205: DDA3937_RS03205 - tRNA-Leu, at 702,763 to 702,848 _RS03205 DDA3937_RS03210: DDA3937_RS03210 - tRNA-Leu, at 702,881 to 702,966 _RS03210 DDA3937_RS03215: DDA3937_RS03215 - tRNA-Leu, at 703,022 to 703,107 _RS03215 DDA3937_RS03220: DDA3937_RS03220 - DUF1435 domain-containing protein, at 703,218 to 703,502 _RS03220 DDA3937_RS03225: DDA3937_RS03225 - LysR family transcriptional regulator, at 703,631 to 704,524 _RS03225 Position (kb) 703 704Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 702.034 kb on + strand, within DDA3937_RS03200at 702.035 kb on - strand, within DDA3937_RS03200at 702.035 kb on - strand, within DDA3937_RS03200at 702.086 kb on + strand, within DDA3937_RS03200at 702.186 kb on + strand, within DDA3937_RS03200at 702.186 kb on + strand, within DDA3937_RS03200at 702.186 kb on + strand, within DDA3937_RS03200at 702.187 kb on - strand, within DDA3937_RS03200at 702.204 kb on + strand, within DDA3937_RS03200at 702.254 kb on + strand, within DDA3937_RS03200at 702.254 kb on + strand, within DDA3937_RS03200at 702.254 kb on + strand, within DDA3937_RS03200at 702.255 kb on - strand, within DDA3937_RS03200at 702.255 kb on - strand, within DDA3937_RS03200at 702.317 kb on + strand, within DDA3937_RS03200at 702.318 kb on - strandat 702.425 kb on + strand, within DDA3937_RS03200at 702.425 kb on + strand, within DDA3937_RS03200at 702.425 kb on + strand, within DDA3937_RS03200at 702.425 kb on + strand, within DDA3937_RS03200at 702.426 kb on - strand, within DDA3937_RS03200at 702.426 kb on - strand, within DDA3937_RS03200at 702.426 kb on - strand, within DDA3937_RS03200at 702.426 kb on - strand, within DDA3937_RS03200at 702.426 kb on - strand, within DDA3937_RS03200at 702.551 kb on + strand, within DDA3937_RS03200at 702.551 kb on + strand, within DDA3937_RS03200at 702.551 kb on + strand, within DDA3937_RS03200at 702.551 kb on + strand, within DDA3937_RS03200at 702.552 kb on - strand, within DDA3937_RS03200at 702.552 kb on - strand, within DDA3937_RS03200at 702.552 kb on - strand, within DDA3937_RS03200at 702.552 kb on - strand, within DDA3937_RS03200at 702.560 kb on + strandat 702.560 kb on + strandat 702.560 kb on + strandat 702.561 kb on - strandat 702.561 kb on - strandat 702.561 kb on - strandat 702.561 kb on - strandat 702.561 kb on - strandat 702.561 kb on - strandat 702.561 kb on - strandat 702.561 kb on - strandat 702.561 kb on - strandat 702.658 kb on + strandat 702.673 kb on + strandat 702.674 kb on - strandat 702.686 kb on + strandat 702.686 kb on + strandat 702.687 kb on - strandat 702.687 kb on - strandat 702.715 kb on - strandat 702.747 kb on + strandat 702.747 kb on + strandat 702.747 kb on + strandat 702.747 kb on + strandat 702.747 kb on + strandat 702.747 kb on + strandat 702.747 kb on + strandat 702.922 kb on + strand, within DDA3937_RS03210at 702.973 kb on + strandat 702.973 kb on + strandat 702.990 kb on + strandat 702.991 kb on - strandat 703.011 kb on + strandat 703.011 kb on + strandat 703.015 kb on - strandat 703.063 kb on + strand, within DDA3937_RS03215at 703.190 kb on - strandat 703.190 kb on - strandat 703.197 kb on + strandat 703.197 kb on + strandat 703.198 kb on - strandat 703.230 kb on + strandat 703.235 kb on + strandat 703.236 kb on - strandat 703.271 kb on + strand, within DDA3937_RS03220at 703.272 kb on - strand, within DDA3937_RS03220at 703.291 kb on + strand, within DDA3937_RS03220at 703.301 kb on + strand, within DDA3937_RS03220at 703.302 kb on - strand, within DDA3937_RS03220at 703.302 kb on - strand, within DDA3937_RS03220at 703.354 kb on + strand, within DDA3937_RS03220at 703.354 kb on + strand, within DDA3937_RS03220at 703.354 kb on + strand, within DDA3937_RS03220at 703.355 kb on - strand, within DDA3937_RS03220at 703.416 kb on + strand, within DDA3937_RS03220at 703.417 kb on - strand, within DDA3937_RS03220at 703.461 kb on + strand, within DDA3937_RS03220at 703.461 kb on + strand, within DDA3937_RS03220at 703.461 kb on + strand, within DDA3937_RS03220at 703.462 kb on - strand, within DDA3937_RS03220at 703.462 kb on - strand, within DDA3937_RS03220at 703.470 kb on + strand, within DDA3937_RS03220at 703.532 kb on - strandat 703.534 kb on + strandat 703.542 kb on - strandat 703.556 kb on + strandat 703.557 kb on - strandat 703.558 kb on + strandat 703.558 kb on + strandat 703.558 kb on + strandat 703.558 kb on + strandat 703.558 kb on + strandat 703.558 kb on + strandat 703.558 kb on + strandat 703.558 kb on + strandat 703.558 kb on + strandat 703.559 kb on - strandat 703.559 kb on - strandat 703.559 kb on - strandat 703.559 kb on - strandat 703.559 kb on - strandat 703.559 kb on - strandat 703.586 kb on + strandat 703.586 kb on + strandat 703.587 kb on - strandat 703.587 kb on - strandat 703.648 kb on - strandat 703.752 kb on + strand, within DDA3937_RS03225at 703.752 kb on + strand, within DDA3937_RS03225at 703.753 kb on - strand, within DDA3937_RS03225at 703.753 kb on - strand, within DDA3937_RS03225at 703.844 kb on - strand, within DDA3937_RS03225at 703.844 kb on - strand, within DDA3937_RS03225at 703.844 kb on - strand, within DDA3937_RS03225at 703.887 kb on + strand, within DDA3937_RS03225at 703.887 kb on + strand, within DDA3937_RS03225at 703.887 kb on + strand, within DDA3937_RS03225at 703.887 kb on + strand, within DDA3937_RS03225at 703.887 kb on + strand, within DDA3937_RS03225at 703.887 kb on + strand, within DDA3937_RS03225at 703.887 kb on + strand, within DDA3937_RS03225at 703.887 kb on + strand, within DDA3937_RS03225at 703.888 kb on - strand, within DDA3937_RS03225at 703.888 kb on - strand, within DDA3937_RS03225at 703.888 kb on - strand, within DDA3937_RS03225at 703.888 kb on - strand, within DDA3937_RS03225at 703.888 kb on - strand, within DDA3937_RS03225at 703.888 kb on - strand, within DDA3937_RS03225at 704.043 kb on - strand, within DDA3937_RS03225at 704.043 kb on - strand, within DDA3937_RS03225at 704.084 kb on + strand, within DDA3937_RS03225at 704.084 kb on + strand, within DDA3937_RS03225at 704.101 kb on + strand, within DDA3937_RS03225

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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702,034 + DDA3937_RS03200 0.32 -0.3
702,035 - DDA3937_RS03200 0.32 -1.8
702,035 - DDA3937_RS03200 0.32 -0.3
702,086 + DDA3937_RS03200 0.38 -1.1
702,186 + DDA3937_RS03200 0.49 -1.0
702,186 + DDA3937_RS03200 0.49 -0.1
702,186 + DDA3937_RS03200 0.49 +0.5
702,187 - DDA3937_RS03200 0.49 -2.4
702,204 + DDA3937_RS03200 0.51 -1.8
702,254 + DDA3937_RS03200 0.56 +0.2
702,254 + DDA3937_RS03200 0.56 -0.3
702,254 + DDA3937_RS03200 0.56 -0.7
702,255 - DDA3937_RS03200 0.57 -0.4
702,255 - DDA3937_RS03200 0.57 -1.7
702,317 + DDA3937_RS03200 0.63 -0.5
702,318 - -0.9
702,425 + DDA3937_RS03200 0.75 -1.5
702,425 + DDA3937_RS03200 0.75 -1.3
702,425 + DDA3937_RS03200 0.75 -0.9
702,425 + DDA3937_RS03200 0.75 -0.7
702,426 - DDA3937_RS03200 0.76 -1.4
702,426 - DDA3937_RS03200 0.76 +0.5
702,426 - DDA3937_RS03200 0.76 +0.2
702,426 - DDA3937_RS03200 0.76 -0.4
702,426 - DDA3937_RS03200 0.76 -1.5
702,551 + DDA3937_RS03200 0.89 +3.9
702,551 + DDA3937_RS03200 0.89 +0.3
702,551 + DDA3937_RS03200 0.89 -0.5
702,551 + DDA3937_RS03200 0.89 +0.3
702,552 - DDA3937_RS03200 0.89 -0.0
702,552 - DDA3937_RS03200 0.89 -0.9
702,552 - DDA3937_RS03200 0.89 -0.1
702,552 - DDA3937_RS03200 0.89 -0.1
702,560 + -1.3
702,560 + +1.4
702,560 + +0.3
702,561 - +0.6
702,561 - +0.4
702,561 - -0.5
702,561 - -1.1
702,561 - +1.9
702,561 - -0.9
702,561 - +0.3
702,561 - -1.2
702,561 - -3.0
702,658 + +0.5
702,673 + -0.8
702,674 - -0.8
702,686 + -1.9
702,686 + -0.4
702,687 - +1.1
702,687 - -1.7
702,715 - -0.4
702,747 + +1.6
702,747 + -0.7
702,747 + -0.5
702,747 + -2.5
702,747 + -1.4
702,747 + -0.2
702,747 + -1.4
702,922 + DDA3937_RS03210 0.48 +0.6
702,973 + +0.9
702,973 + -2.1
702,990 + +0.5
702,991 - -0.4
703,011 + +1.0
703,011 + +0.4
703,015 - -0.4
703,063 + DDA3937_RS03215 0.48 -0.3
703,190 - -0.8
703,190 - +0.1
703,197 + -0.5
703,197 + -0.6
703,198 - +0.2
703,230 + +2.2
703,235 + -0.5
703,236 - -2.3
703,271 + DDA3937_RS03220 0.19 -0.5
703,272 - DDA3937_RS03220 0.19 -0.0
703,291 + DDA3937_RS03220 0.26 +0.4
703,301 + DDA3937_RS03220 0.29 -0.5
703,302 - DDA3937_RS03220 0.29 -1.5
703,302 - DDA3937_RS03220 0.29 -0.6
703,354 + DDA3937_RS03220 0.48 -0.4
703,354 + DDA3937_RS03220 0.48 +1.2
703,354 + DDA3937_RS03220 0.48 +1.9
703,355 - DDA3937_RS03220 0.48 -0.0
703,416 + DDA3937_RS03220 0.69 +3.8
703,417 - DDA3937_RS03220 0.70 -0.8
703,461 + DDA3937_RS03220 0.85 -0.2
703,461 + DDA3937_RS03220 0.85 +0.5
703,461 + DDA3937_RS03220 0.85 -0.4
703,462 - DDA3937_RS03220 0.86 -0.5
703,462 - DDA3937_RS03220 0.86 -0.1
703,470 + DDA3937_RS03220 0.88 -1.2
703,532 - +0.2
703,534 + +0.6
703,542 - -0.7
703,556 + +0.4
703,557 - -0.4
703,558 + -0.8
703,558 + -1.3
703,558 + -0.4
703,558 + +1.2
703,558 + -0.3
703,558 + +1.4
703,558 + -0.2
703,558 + -0.4
703,558 + +0.1
703,559 - -0.2
703,559 - -0.2
703,559 - -0.1
703,559 - -0.7
703,559 - -0.3
703,559 - -1.1
703,586 + -1.8
703,586 + -0.2
703,587 - +0.3
703,587 - -0.5
703,648 - -0.4
703,752 + DDA3937_RS03225 0.14 +0.2
703,752 + DDA3937_RS03225 0.14 +0.5
703,753 - DDA3937_RS03225 0.14 +1.5
703,753 - DDA3937_RS03225 0.14 +0.4
703,844 - DDA3937_RS03225 0.24 -0.4
703,844 - DDA3937_RS03225 0.24 +0.4
703,844 - DDA3937_RS03225 0.24 +0.1
703,887 + DDA3937_RS03225 0.29 +0.5
703,887 + DDA3937_RS03225 0.29 -0.9
703,887 + DDA3937_RS03225 0.29 -0.1
703,887 + DDA3937_RS03225 0.29 -1.0
703,887 + DDA3937_RS03225 0.29 +0.6
703,887 + DDA3937_RS03225 0.29 +0.1
703,887 + DDA3937_RS03225 0.29 -0.0
703,887 + DDA3937_RS03225 0.29 +1.2
703,888 - DDA3937_RS03225 0.29 +0.2
703,888 - DDA3937_RS03225 0.29 -0.2
703,888 - DDA3937_RS03225 0.29 -1.9
703,888 - DDA3937_RS03225 0.29 -0.0
703,888 - DDA3937_RS03225 0.29 -0.5
703,888 - DDA3937_RS03225 0.29 -0.3
704,043 - DDA3937_RS03225 0.46 -0.4
704,043 - DDA3937_RS03225 0.46 -0.4
704,084 + DDA3937_RS03225 0.51 -0.7
704,084 + DDA3937_RS03225 0.51 +0.2
704,101 + DDA3937_RS03225 0.53 -0.3

Or see this region's nucleotide sequence