Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03170 and DDA3937_RS03175 are separated by 60 nucleotides DDA3937_RS03175 and DDA3937_RS03180 are separated by 101 nucleotides DDA3937_RS03180 and DDA3937_RS03185 overlap by 32 nucleotides DDA3937_RS03185 and DDA3937_RS03190 are separated by 146 nucleotides
DDA3937_RS03170: DDA3937_RS03170 - nuclear transport factor 2 family protein, at 697,641 to 698,036
_RS03170
DDA3937_RS03175: DDA3937_RS03175 - antibiotic biosynthesis monooxygenase, at 698,097 to 698,489
_RS03175
DDA3937_RS03180: DDA3937_RS03180 - ribosomal protein S18-alanine N-acetyltransferase, at 698,591 to 699,034
_RS03180
DDA3937_RS03185: DDA3937_RS03185 - DNA polymerase III subunit psi, at 699,003 to 699,422
_RS03185
DDA3937_RS03190: DDA3937_RS03190 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 699,569 to 700,597
_RS03190
Position (kb) 698
699
700 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 697.671 kb on + strand at 697.672 kb on - strand at 697.672 kb on - strand at 697.672 kb on - strand at 697.694 kb on + strand, within DDA3937_RS03170 at 697.695 kb on - strand, within DDA3937_RS03170 at 697.743 kb on + strand, within DDA3937_RS03170 at 697.743 kb on + strand, within DDA3937_RS03170 at 697.743 kb on + strand, within DDA3937_RS03170 at 697.802 kb on + strand, within DDA3937_RS03170 at 697.814 kb on - strand, within DDA3937_RS03170 at 697.814 kb on - strand, within DDA3937_RS03170 at 697.845 kb on - strand, within DDA3937_RS03170 at 697.845 kb on - strand, within DDA3937_RS03170 at 697.848 kb on - strand, within DDA3937_RS03170 at 697.890 kb on + strand, within DDA3937_RS03170 at 697.891 kb on - strand, within DDA3937_RS03170 at 697.891 kb on - strand, within DDA3937_RS03170 at 697.891 kb on - strand, within DDA3937_RS03170 at 697.891 kb on - strand, within DDA3937_RS03170 at 697.929 kb on + strand, within DDA3937_RS03170 at 697.941 kb on + strand, within DDA3937_RS03170 at 697.941 kb on + strand, within DDA3937_RS03170 at 697.941 kb on + strand, within DDA3937_RS03170 at 697.942 kb on - strand, within DDA3937_RS03170 at 697.942 kb on - strand, within DDA3937_RS03170 at 698.000 kb on + strand at 698.034 kb on + strand at 698.035 kb on - strand at 698.072 kb on + strand at 698.084 kb on - strand at 698.084 kb on - strand at 698.123 kb on + strand at 698.123 kb on + strand at 698.123 kb on + strand at 698.123 kb on + strand at 698.124 kb on - strand at 698.124 kb on - strand at 698.124 kb on - strand at 698.124 kb on - strand at 698.181 kb on + strand, within DDA3937_RS03175 at 698.181 kb on + strand, within DDA3937_RS03175 at 698.182 kb on - strand, within DDA3937_RS03175 at 698.184 kb on + strand, within DDA3937_RS03175 at 698.185 kb on - strand, within DDA3937_RS03175 at 698.346 kb on + strand, within DDA3937_RS03175 at 698.346 kb on + strand, within DDA3937_RS03175 at 698.347 kb on - strand, within DDA3937_RS03175 at 698.347 kb on - strand, within DDA3937_RS03175 at 698.378 kb on - strand, within DDA3937_RS03175 at 698.399 kb on + strand, within DDA3937_RS03175 at 698.456 kb on + strand at 698.456 kb on + strand at 698.456 kb on + strand at 698.456 kb on + strand at 698.456 kb on + strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.525 kb on + strand at 698.531 kb on + strand at 698.532 kb on - strand at 698.563 kb on + strand at 698.564 kb on - strand at 698.566 kb on + strand at 698.566 kb on + strand at 698.566 kb on + strand at 698.566 kb on + strand at 698.567 kb on - strand at 698.567 kb on - strand at 698.567 kb on - strand at 698.649 kb on + strand, within DDA3937_RS03180 at 698.691 kb on + strand, within DDA3937_RS03180 at 698.859 kb on - strand, within DDA3937_RS03180 at 698.859 kb on - strand, within DDA3937_RS03180 at 698.859 kb on - strand, within DDA3937_RS03180 at 698.859 kb on - strand, within DDA3937_RS03180 at 698.866 kb on + strand, within DDA3937_RS03180 at 698.874 kb on + strand, within DDA3937_RS03180 at 698.875 kb on - strand, within DDA3937_RS03180 at 698.916 kb on + strand, within DDA3937_RS03180 at 699.428 kb on - strand at 699.495 kb on - strand at 699.495 kb on - strand at 699.495 kb on - strand at 699.532 kb on + strand at 699.533 kb on - strand at 699.533 kb on - strand at 699.533 kb on - strand at 699.534 kb on + strand at 699.534 kb on + strand at 699.534 kb on + strand at 699.534 kb on + strand at 699.534 kb on + strand at 699.534 kb on + strand at 699.535 kb on - strand at 699.535 kb on - strand at 699.535 kb on - strand at 699.535 kb on - strand at 699.600 kb on + strand at 699.601 kb on - strand at 699.601 kb on - strand at 699.601 kb on - strand at 699.661 kb on + strand at 699.661 kb on + strand at 699.661 kb on + strand at 699.662 kb on - strand at 699.714 kb on - strand, within DDA3937_RS03190 at 699.714 kb on - strand, within DDA3937_RS03190 at 699.714 kb on - strand, within DDA3937_RS03190 at 699.714 kb on - strand, within DDA3937_RS03190 at 699.812 kb on + strand, within DDA3937_RS03190 at 699.812 kb on + strand, within DDA3937_RS03190 at 699.812 kb on + strand, within DDA3937_RS03190 at 699.813 kb on - strand, within DDA3937_RS03190 at 699.813 kb on - strand, within DDA3937_RS03190 at 699.813 kb on - strand, within DDA3937_RS03190 at 699.815 kb on + strand, within DDA3937_RS03190 at 699.815 kb on + strand, within DDA3937_RS03190 at 699.938 kb on - strand, within DDA3937_RS03190
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 697,671 + -1.9 697,672 - -1.0 697,672 - +1.0 697,672 - -0.8 697,694 + DDA3937_RS03170 0.13 -1.8 697,695 - DDA3937_RS03170 0.14 -0.4 697,743 + DDA3937_RS03170 0.26 +1.3 697,743 + DDA3937_RS03170 0.26 -1.9 697,743 + DDA3937_RS03170 0.26 -0.4 697,802 + DDA3937_RS03170 0.41 -1.1 697,814 - DDA3937_RS03170 0.44 -0.8 697,814 - DDA3937_RS03170 0.44 +0.0 697,845 - DDA3937_RS03170 0.52 +0.1 697,845 - DDA3937_RS03170 0.52 +1.4 697,848 - DDA3937_RS03170 0.52 +1.3 697,890 + DDA3937_RS03170 0.63 +0.9 697,891 - DDA3937_RS03170 0.63 -1.8 697,891 - DDA3937_RS03170 0.63 +0.3 697,891 - DDA3937_RS03170 0.63 -1.1 697,891 - DDA3937_RS03170 0.63 +0.1 697,929 + DDA3937_RS03170 0.73 +3.6 697,941 + DDA3937_RS03170 0.76 -0.5 697,941 + DDA3937_RS03170 0.76 -1.4 697,941 + DDA3937_RS03170 0.76 -0.2 697,942 - DDA3937_RS03170 0.76 -0.0 697,942 - DDA3937_RS03170 0.76 -1.2 698,000 + -2.1 698,034 + +0.5 698,035 - +0.1 698,072 + +1.1 698,084 - -0.6 698,084 - +0.1 698,123 + +0.2 698,123 + +0.1 698,123 + -0.2 698,123 + +0.9 698,124 - -0.4 698,124 - -0.2 698,124 - -0.9 698,124 - -0.4 698,181 + DDA3937_RS03175 0.21 +0.9 698,181 + DDA3937_RS03175 0.21 +1.1 698,182 - DDA3937_RS03175 0.22 +0.8 698,184 + DDA3937_RS03175 0.22 -0.5 698,185 - DDA3937_RS03175 0.22 +0.3 698,346 + DDA3937_RS03175 0.63 -0.2 698,346 + DDA3937_RS03175 0.63 -0.8 698,347 - DDA3937_RS03175 0.64 +0.7 698,347 - DDA3937_RS03175 0.64 -1.0 698,378 - DDA3937_RS03175 0.72 -0.1 698,399 + DDA3937_RS03175 0.77 -0.6 698,456 + -0.9 698,456 + -0.4 698,456 + +0.6 698,456 + +0.3 698,456 + -0.9 698,457 - +3.0 698,457 - -0.1 698,457 - +0.5 698,457 - -1.4 698,457 - +0.1 698,457 - -0.6 698,457 - +0.8 698,511 + -1.6 698,511 + +0.4 698,511 + -0.0 698,511 + +2.6 698,511 + -1.4 698,511 + -0.2 698,511 + -1.9 698,511 + -1.4 698,511 + -1.7 698,511 + +0.3 698,511 + +3.0 698,511 + +1.0 698,511 + -0.6 698,511 + +1.6 698,511 + -1.3 698,511 + -1.4 698,511 + +0.1 698,511 + -0.5 698,512 - -0.2 698,512 - -0.6 698,512 - -0.1 698,512 - -2.2 698,512 - -0.9 698,512 - -0.1 698,512 - -1.3 698,512 - -0.1 698,512 - +0.7 698,512 - -0.0 698,512 - +2.6 698,512 - +0.5 698,512 - +0.8 698,512 - -1.4 698,513 + -0.2 698,513 + -0.2 698,513 + -1.0 698,513 + -0.5 698,513 + +0.6 698,513 + +0.1 698,513 + +0.4 698,513 + -0.9 698,513 + +0.1 698,513 + -1.6 698,513 + -1.0 698,513 + -0.5 698,513 + -0.1 698,513 + +1.8 698,514 - +0.3 698,514 - +0.0 698,514 - +0.1 698,514 - +3.2 698,514 - -1.2 698,514 - +0.1 698,514 - +4.1 698,514 - -0.6 698,514 - -0.4 698,514 - -0.7 698,514 - +0.5 698,514 - +0.6 698,514 - -0.1 698,514 - +0.4 698,514 - -1.1 698,514 - +4.1 698,515 + -1.2 698,515 + -0.4 698,515 + +0.7 698,515 + -1.4 698,515 + -1.4 698,515 + -0.5 698,515 + +0.3 698,515 + +0.1 698,515 + +1.1 698,515 + -0.4 698,515 + -0.7 698,515 + -0.2 698,515 + -1.4 698,515 + +0.0 698,515 + -1.8 698,515 + -0.5 698,515 + -0.4 698,515 + -0.4 698,516 - +0.4 698,516 - -0.9 698,516 - +0.2 698,516 - -1.5 698,516 - -0.0 698,516 - -0.1 698,516 - +0.2 698,516 - -0.3 698,516 - -0.2 698,516 - +0.0 698,516 - -1.4 698,516 - -0.4 698,516 - +0.6 698,516 - -0.3 698,516 - +0.5 698,516 - -0.1 698,516 - +0.4 698,516 - +1.6 698,517 + -0.6 698,517 + +0.5 698,517 + +0.9 698,517 + -2.2 698,517 + -0.6 698,517 + +0.1 698,517 + +1.1 698,517 + +0.1 698,517 + +1.0 698,517 + -0.5 698,517 + -0.4 698,517 + +1.0 698,517 + +0.9 698,517 + +0.5 698,517 + +1.6 698,518 - -1.5 698,518 - -0.7 698,518 - -0.4 698,518 - -0.4 698,518 - +2.0 698,518 - +1.6 698,518 - +0.1 698,518 - +1.3 698,518 - -0.7 698,518 - +0.6 698,518 - -0.3 698,518 - +0.9 698,518 - +0.6 698,518 - +0.5 698,525 + -0.7 698,531 + +2.2 698,532 - -0.8 698,563 + -0.2 698,564 - +1.1 698,566 + -1.5 698,566 + -0.9 698,566 + +0.2 698,566 + +0.4 698,567 - -1.0 698,567 - -0.1 698,567 - +1.3 698,649 + DDA3937_RS03180 0.13 -1.8 698,691 + DDA3937_RS03180 0.23 +0.5 698,859 - DDA3937_RS03180 0.60 -0.8 698,859 - DDA3937_RS03180 0.60 -1.6 698,859 - DDA3937_RS03180 0.60 -0.6 698,859 - DDA3937_RS03180 0.60 -1.0 698,866 + DDA3937_RS03180 0.62 -1.8 698,874 + DDA3937_RS03180 0.64 -0.4 698,875 - DDA3937_RS03180 0.64 +0.2 698,916 + DDA3937_RS03180 0.73 -2.0 699,428 - -1.4 699,495 - -0.6 699,495 - -0.1 699,495 - +0.3 699,532 + +0.8 699,533 - +1.4 699,533 - -0.9 699,533 - -1.5 699,534 + -0.4 699,534 + -0.4 699,534 + +1.1 699,534 + -0.6 699,534 + +0.3 699,534 + +1.1 699,535 - +0.1 699,535 - -1.2 699,535 - +0.0 699,535 - -1.7 699,600 + -0.4 699,601 - -1.4 699,601 - +0.4 699,601 - -2.4 699,661 + -0.5 699,661 + +0.7 699,661 + -0.1 699,662 - -0.7 699,714 - DDA3937_RS03190 0.14 -0.6 699,714 - DDA3937_RS03190 0.14 -2.5 699,714 - DDA3937_RS03190 0.14 -0.4 699,714 - DDA3937_RS03190 0.14 +0.1 699,812 + DDA3937_RS03190 0.24 -0.6 699,812 + DDA3937_RS03190 0.24 -1.5 699,812 + DDA3937_RS03190 0.24 -0.3 699,813 - DDA3937_RS03190 0.24 -0.4 699,813 - DDA3937_RS03190 0.24 -3.5 699,813 - DDA3937_RS03190 0.24 -0.1 699,815 + DDA3937_RS03190 0.24 -0.1 699,815 + DDA3937_RS03190 0.24 -0.7 699,938 - DDA3937_RS03190 0.36 -1.7
Or see this region's nucleotide sequence