Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02160 and DDA3937_RS02165 are separated by 2 nucleotides DDA3937_RS02165 and DDA3937_RS02170 are separated by 13 nucleotides DDA3937_RS02170 and DDA3937_RS02175 are separated by 92 nucleotides
DDA3937_RS02160: DDA3937_RS02160 - transketolase, at 480,179 to 480,982
_RS02160
DDA3937_RS02165: DDA3937_RS02165 - transketolase, at 480,985 to 481,905
_RS02165
DDA3937_RS02170: DDA3937_RS02170 - D-threitol dehydrogenase, at 481,919 to 482,722
_RS02170
DDA3937_RS02175: DDA3937_RS02175 - D-ribose ABC transporter substrate-binding protein, at 482,815 to 483,750
_RS02175
Position (kb) 481
482
483 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 480.995 kb on + strand at 481.055 kb on + strand at 481.056 kb on - strand at 481.056 kb on - strand at 481.056 kb on - strand at 481.056 kb on - strand at 481.056 kb on - strand at 481.059 kb on - strand at 481.059 kb on - strand at 481.261 kb on + strand at 481.262 kb on - strand, within DDA3937_RS02165 at 481.262 kb on - strand at 481.338 kb on + strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.453 kb on + strand, within DDA3937_RS02165 at 481.453 kb on + strand at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.456 kb on - strand at 481.682 kb on - strand, within DDA3937_RS02165 at 481.707 kb on - strand, within DDA3937_RS02165 at 481.707 kb on - strand, within DDA3937_RS02165 at 481.750 kb on - strand, within DDA3937_RS02165 at 481.804 kb on - strand, within DDA3937_RS02165 at 481.810 kb on - strand, within DDA3937_RS02165 at 481.869 kb on - strand at 481.937 kb on + strand at 481.938 kb on - strand at 481.938 kb on - strand at 482.178 kb on + strand, within DDA3937_RS02170 at 482.246 kb on + strand, within DDA3937_RS02170 at 482.246 kb on + strand, within DDA3937_RS02170 at 482.246 kb on + strand, within DDA3937_RS02170 at 482.353 kb on + strand, within DDA3937_RS02170 at 482.384 kb on - strand, within DDA3937_RS02170 at 482.435 kb on + strand, within DDA3937_RS02170 at 482.504 kb on - strand, within DDA3937_RS02170 at 482.504 kb on - strand, within DDA3937_RS02170 at 482.837 kb on + strand at 482.838 kb on - strand at 482.838 kb on - strand at 482.847 kb on + strand at 482.929 kb on + strand, within DDA3937_RS02175 at 482.929 kb on + strand, within DDA3937_RS02175 at 482.929 kb on + strand, within DDA3937_RS02175 at 482.929 kb on + strand, within DDA3937_RS02175 at 482.932 kb on + strand, within DDA3937_RS02175 at 482.933 kb on - strand, within DDA3937_RS02175 at 482.933 kb on - strand, within DDA3937_RS02175 at 482.933 kb on - strand, within DDA3937_RS02175 at 482.980 kb on + strand, within DDA3937_RS02175 at 482.980 kb on + strand, within DDA3937_RS02175 at 482.981 kb on - strand, within DDA3937_RS02175 at 482.981 kb on - strand, within DDA3937_RS02175 at 482.982 kb on + strand, within DDA3937_RS02175 at 482.982 kb on + strand, within DDA3937_RS02175 at 482.983 kb on - strand, within DDA3937_RS02175 at 483.059 kb on + strand, within DDA3937_RS02175 at 483.265 kb on + strand, within DDA3937_RS02175 at 483.265 kb on + strand, within DDA3937_RS02175 at 483.265 kb on + strand, within DDA3937_RS02175 at 483.265 kb on + strand, within DDA3937_RS02175 at 483.266 kb on - strand, within DDA3937_RS02175 at 483.266 kb on - strand, within DDA3937_RS02175 at 483.643 kb on + strand, within DDA3937_RS02175 at 483.643 kb on + strand, within DDA3937_RS02175 at 483.643 kb on + strand, within DDA3937_RS02175 at 483.643 kb on + strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.703 kb on - strand at 483.703 kb on - strand at 483.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 480,995 + +0.1 481,055 + -1.1 481,056 - -0.8 481,056 - +0.7 481,056 - -1.3 481,056 - +0.3 481,056 - -1.6 481,059 - -1.6 481,059 - -0.1 481,261 + +1.5 481,262 - DDA3937_RS02165 0.30 +0.7 481,262 - +1.3 481,338 + DDA3937_RS02165 0.38 -1.4 481,339 - DDA3937_RS02165 0.38 -0.2 481,339 - DDA3937_RS02165 0.38 +0.4 481,339 - DDA3937_RS02165 0.38 +0.1 481,339 - DDA3937_RS02165 0.38 -0.2 481,339 - DDA3937_RS02165 0.38 -1.3 481,339 - DDA3937_RS02165 0.38 -0.6 481,339 - DDA3937_RS02165 0.38 -0.7 481,339 - DDA3937_RS02165 0.38 -0.5 481,339 - DDA3937_RS02165 0.38 -0.2 481,453 + DDA3937_RS02165 0.51 -3.1 481,453 + -0.3 481,454 - DDA3937_RS02165 0.51 -0.9 481,454 - DDA3937_RS02165 0.51 -1.0 481,454 - DDA3937_RS02165 0.51 +1.0 481,454 - DDA3937_RS02165 0.51 -0.3 481,454 - DDA3937_RS02165 0.51 -1.0 481,454 - DDA3937_RS02165 0.51 -0.2 481,454 - DDA3937_RS02165 0.51 -0.9 481,454 - DDA3937_RS02165 0.51 +0.8 481,456 - +1.7 481,682 - DDA3937_RS02165 0.76 -0.1 481,707 - DDA3937_RS02165 0.78 -1.3 481,707 - DDA3937_RS02165 0.78 +0.1 481,750 - DDA3937_RS02165 0.83 +1.7 481,804 - DDA3937_RS02165 0.89 -0.7 481,810 - DDA3937_RS02165 0.90 -1.6 481,869 - +2.0 481,937 + -2.3 481,938 - +0.8 481,938 - -0.4 482,178 + DDA3937_RS02170 0.32 +0.3 482,246 + DDA3937_RS02170 0.41 -1.0 482,246 + DDA3937_RS02170 0.41 -2.1 482,246 + DDA3937_RS02170 0.41 +0.4 482,353 + DDA3937_RS02170 0.54 -1.0 482,384 - DDA3937_RS02170 0.58 -0.6 482,435 + DDA3937_RS02170 0.64 -1.8 482,504 - DDA3937_RS02170 0.73 -2.0 482,504 - DDA3937_RS02170 0.73 -0.3 482,837 + +0.3 482,838 - +0.4 482,838 - -0.3 482,847 + -1.1 482,929 + DDA3937_RS02175 0.12 -1.9 482,929 + DDA3937_RS02175 0.12 -0.3 482,929 + DDA3937_RS02175 0.12 -0.8 482,929 + DDA3937_RS02175 0.12 +0.5 482,932 + DDA3937_RS02175 0.12 +0.1 482,933 - DDA3937_RS02175 0.13 +0.8 482,933 - DDA3937_RS02175 0.13 +0.4 482,933 - DDA3937_RS02175 0.13 -2.2 482,980 + DDA3937_RS02175 0.18 -0.6 482,980 + DDA3937_RS02175 0.18 -1.4 482,981 - DDA3937_RS02175 0.18 +1.1 482,981 - DDA3937_RS02175 0.18 +0.9 482,982 + DDA3937_RS02175 0.18 -0.3 482,982 + DDA3937_RS02175 0.18 -2.0 482,983 - DDA3937_RS02175 0.18 +0.1 483,059 + DDA3937_RS02175 0.26 +0.7 483,265 + DDA3937_RS02175 0.48 +0.3 483,265 + DDA3937_RS02175 0.48 -0.3 483,265 + DDA3937_RS02175 0.48 -0.9 483,265 + DDA3937_RS02175 0.48 -1.3 483,266 - DDA3937_RS02175 0.48 -1.3 483,266 - DDA3937_RS02175 0.48 +1.1 483,643 + DDA3937_RS02175 0.88 +0.2 483,643 + DDA3937_RS02175 0.88 +1.7 483,643 + DDA3937_RS02175 0.88 -0.5 483,643 + DDA3937_RS02175 0.88 +0.6 483,644 - DDA3937_RS02175 0.89 +0.1 483,644 - DDA3937_RS02175 0.89 -0.5 483,644 - DDA3937_RS02175 0.89 +0.3 483,644 - DDA3937_RS02175 0.89 +1.0 483,644 - DDA3937_RS02175 0.89 -0.3 483,703 - +2.8 483,703 - -2.2 483,703 - -0.5
Or see this region's nucleotide sequence