Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01675 and DDA3937_RS01680 are separated by 236 nucleotides DDA3937_RS01680 and DDA3937_RS01685 overlap by 4 nucleotides DDA3937_RS01685 and DDA3937_RS01690 are separated by 93 nucleotides
DDA3937_RS01675: DDA3937_RS01675 - aerobic respiration two-component sensor histidine kinase ArcB, at 370,664 to 373,003
_RS01675
DDA3937_RS01680: DDA3937_RS01680 - isoprenoid biosynthesis glyoxalase ElbB, at 373,240 to 373,893
_RS01680
DDA3937_RS01685: DDA3937_RS01685 - monofunctional biosynthetic peptidoglycan transglycosylase, at 373,890 to 374,639
_RS01685
DDA3937_RS01690: DDA3937_RS01690 - alginate lyase family protein, at 374,733 to 376,034
_RS01690
Position (kb) 373
374
375 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 372.894 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.966 kb on + strand at 372.966 kb on + strand at 372.967 kb on - strand at 373.031 kb on + strand at 373.088 kb on - strand at 373.131 kb on + strand at 373.131 kb on + strand at 373.132 kb on - strand at 373.132 kb on - strand at 373.132 kb on - strand at 373.132 kb on - strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.180 kb on - strand at 373.180 kb on - strand at 373.180 kb on - strand at 373.180 kb on - strand at 373.180 kb on - strand at 373.211 kb on - strand at 373.220 kb on - strand at 373.260 kb on - strand at 373.260 kb on - strand at 373.279 kb on + strand at 373.279 kb on + strand at 373.632 kb on - strand, within DDA3937_RS01680 at 373.644 kb on + strand, within DDA3937_RS01680 at 373.644 kb on + strand, within DDA3937_RS01680 at 373.677 kb on + strand, within DDA3937_RS01680 at 373.692 kb on + strand, within DDA3937_RS01680 at 373.693 kb on - strand, within DDA3937_RS01680 at 373.763 kb on + strand, within DDA3937_RS01680 at 373.763 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.814 kb on - strand, within DDA3937_RS01680 at 373.907 kb on - strand at 373.907 kb on - strand at 374.061 kb on - strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.089 kb on - strand, within DDA3937_RS01685 at 374.092 kb on + strand, within DDA3937_RS01685 at 374.092 kb on + strand, within DDA3937_RS01685 at 374.092 kb on + strand, within DDA3937_RS01685 at 374.092 kb on + strand, within DDA3937_RS01685 at 374.093 kb on - strand, within DDA3937_RS01685 at 374.093 kb on - strand, within DDA3937_RS01685 at 374.321 kb on + strand, within DDA3937_RS01685 at 374.379 kb on - strand, within DDA3937_RS01685 at 374.392 kb on - strand, within DDA3937_RS01685 at 374.399 kb on + strand, within DDA3937_RS01685 at 374.399 kb on + strand, within DDA3937_RS01685 at 374.399 kb on + strand, within DDA3937_RS01685 at 374.399 kb on + strand, within DDA3937_RS01685 at 374.431 kb on + strand, within DDA3937_RS01685 at 374.432 kb on - strand, within DDA3937_RS01685 at 374.432 kb on - strand, within DDA3937_RS01685 at 374.432 kb on - strand, within DDA3937_RS01685 at 374.553 kb on + strand, within DDA3937_RS01685 at 374.553 kb on + strand, within DDA3937_RS01685 at 374.554 kb on - strand, within DDA3937_RS01685 at 374.634 kb on + strand at 374.731 kb on + strand at 374.731 kb on + strand at 374.732 kb on - strand at 374.732 kb on - strand at 374.732 kb on - strand at 374.732 kb on - strand at 374.732 kb on - strand at 374.732 kb on - strand at 374.740 kb on - strand at 374.786 kb on - strand at 374.786 kb on - strand at 374.786 kb on - strand at 374.826 kb on + strand at 374.827 kb on - strand at 374.827 kb on - strand at 374.860 kb on + strand at 374.910 kb on + strand, within DDA3937_RS01690 at 374.910 kb on + strand, within DDA3937_RS01690 at 374.921 kb on - strand, within DDA3937_RS01690 at 374.921 kb on - strand, within DDA3937_RS01690 at 374.921 kb on - strand, within DDA3937_RS01690 at 374.921 kb on - strand, within DDA3937_RS01690 at 375.009 kb on + strand, within DDA3937_RS01690 at 375.009 kb on + strand, within DDA3937_RS01690 at 375.010 kb on - strand, within DDA3937_RS01690 at 375.010 kb on - strand, within DDA3937_RS01690 at 375.010 kb on - strand at 375.010 kb on - strand, within DDA3937_RS01690 at 375.010 kb on - strand, within DDA3937_RS01690 at 375.010 kb on - strand, within DDA3937_RS01690 at 375.027 kb on + strand, within DDA3937_RS01690 at 375.027 kb on + strand, within DDA3937_RS01690 at 375.151 kb on + strand, within DDA3937_RS01690 at 375.151 kb on + strand, within DDA3937_RS01690 at 375.152 kb on - strand, within DDA3937_RS01690 at 375.158 kb on - strand, within DDA3937_RS01690 at 375.158 kb on - strand, within DDA3937_RS01690 at 375.158 kb on - strand, within DDA3937_RS01690 at 375.158 kb on - strand, within DDA3937_RS01690 at 375.158 kb on - strand, within DDA3937_RS01690 at 375.174 kb on + strand, within DDA3937_RS01690 at 375.174 kb on + strand, within DDA3937_RS01690 at 375.174 kb on + strand, within DDA3937_RS01690 at 375.175 kb on - strand, within DDA3937_RS01690 at 375.175 kb on - strand, within DDA3937_RS01690 at 375.195 kb on + strand, within DDA3937_RS01690 at 375.195 kb on + strand, within DDA3937_RS01690 at 375.233 kb on + strand, within DDA3937_RS01690 at 375.233 kb on + strand, within DDA3937_RS01690 at 375.234 kb on - strand, within DDA3937_RS01690 at 375.237 kb on - strand, within DDA3937_RS01690 at 375.252 kb on - strand, within DDA3937_RS01690 at 375.252 kb on - strand, within DDA3937_RS01690 at 375.260 kb on + strand, within DDA3937_RS01690 at 375.266 kb on - strand, within DDA3937_RS01690 at 375.266 kb on - strand, within DDA3937_RS01690 at 375.266 kb on - strand, within DDA3937_RS01690 at 375.270 kb on + strand, within DDA3937_RS01690 at 375.271 kb on - strand, within DDA3937_RS01690 at 375.364 kb on + strand, within DDA3937_RS01690 at 375.364 kb on + strand, within DDA3937_RS01690 at 375.365 kb on - strand, within DDA3937_RS01690 at 375.365 kb on - strand, within DDA3937_RS01690 at 375.429 kb on + strand, within DDA3937_RS01690 at 375.430 kb on - strand, within DDA3937_RS01690 at 375.430 kb on - strand, within DDA3937_RS01690 at 375.430 kb on - strand, within DDA3937_RS01690 at 375.455 kb on + strand, within DDA3937_RS01690 at 375.485 kb on + strand, within DDA3937_RS01690 at 375.485 kb on + strand, within DDA3937_RS01690 at 375.485 kb on + strand, within DDA3937_RS01690 at 375.486 kb on - strand, within DDA3937_RS01690 at 375.486 kb on - strand, within DDA3937_RS01690 at 375.494 kb on + strand, within DDA3937_RS01690 at 375.494 kb on + strand, within DDA3937_RS01690 at 375.494 kb on + strand, within DDA3937_RS01690 at 375.494 kb on + strand, within DDA3937_RS01690 at 375.494 kb on + strand, within DDA3937_RS01690 at 375.494 kb on + strand, within DDA3937_RS01690 at 375.494 kb on + strand, within DDA3937_RS01690 at 375.495 kb on - strand, within DDA3937_RS01690 at 375.495 kb on - strand, within DDA3937_RS01690 at 375.501 kb on + strand, within DDA3937_RS01690 at 375.502 kb on - strand, within DDA3937_RS01690 at 375.532 kb on - strand, within DDA3937_RS01690 at 375.532 kb on - strand, within DDA3937_RS01690
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 372,894 + +1.4 372,915 + +0.5 372,915 + -0.2 372,915 + +1.8 372,915 + +2.5 372,915 + +0.4 372,915 + +2.5 372,915 + +1.0 372,915 + +1.3 372,915 + +0.3 372,916 - +0.3 372,916 - -0.6 372,916 - +0.9 372,916 - +0.8 372,916 - -0.4 372,916 - -0.1 372,916 - -1.0 372,916 - -0.2 372,966 + -0.1 372,966 + +1.8 372,967 - +1.7 373,031 + +2.7 373,088 - +1.9 373,131 + +2.3 373,131 + +2.7 373,132 - +3.0 373,132 - +2.7 373,132 - +2.8 373,132 - +0.9 373,138 + +1.9 373,138 + +4.0 373,138 + +2.5 373,138 + +2.6 373,139 - +2.2 373,139 - +2.3 373,139 - +3.1 373,179 + +3.0 373,179 + +2.4 373,179 + +2.0 373,179 + +3.1 373,179 + +2.9 373,179 + +2.4 373,180 - +1.7 373,180 - +2.4 373,180 - +1.2 373,180 - +2.4 373,180 - +0.9 373,211 - -1.5 373,220 - -0.2 373,260 - -2.4 373,260 - +0.5 373,279 + -2.0 373,279 + -0.3 373,632 - DDA3937_RS01680 0.60 +0.1 373,644 + DDA3937_RS01680 0.62 -0.1 373,644 + DDA3937_RS01680 0.62 -0.8 373,677 + DDA3937_RS01680 0.67 -1.1 373,692 + DDA3937_RS01680 0.69 -0.1 373,693 - DDA3937_RS01680 0.69 +1.1 373,763 + DDA3937_RS01680 0.80 -1.3 373,763 + DDA3937_RS01680 0.80 +0.1 373,813 + DDA3937_RS01680 0.88 +0.7 373,813 + DDA3937_RS01680 0.88 +0.1 373,813 + -0.3 373,813 + DDA3937_RS01680 0.88 -1.3 373,813 + DDA3937_RS01680 0.88 +1.5 373,813 + DDA3937_RS01680 0.88 +0.3 373,813 + DDA3937_RS01680 0.88 +0.7 373,814 - DDA3937_RS01680 0.88 -0.2 373,907 - -1.1 373,907 - +0.3 374,061 - DDA3937_RS01685 0.23 -0.4 374,088 + DDA3937_RS01685 0.26 +2.1 374,088 + DDA3937_RS01685 0.26 -1.9 374,088 + DDA3937_RS01685 0.26 -1.0 374,088 + DDA3937_RS01685 0.26 +0.3 374,088 + DDA3937_RS01685 0.26 +0.3 374,088 + DDA3937_RS01685 0.26 -0.7 374,088 + DDA3937_RS01685 0.26 +0.9 374,089 - DDA3937_RS01685 0.27 -1.0 374,092 + DDA3937_RS01685 0.27 +1.0 374,092 + DDA3937_RS01685 0.27 -0.9 374,092 + DDA3937_RS01685 0.27 -0.6 374,092 + DDA3937_RS01685 0.27 -0.7 374,093 - DDA3937_RS01685 0.27 -0.1 374,093 - DDA3937_RS01685 0.27 +0.8 374,321 + DDA3937_RS01685 0.57 -1.1 374,379 - DDA3937_RS01685 0.65 +0.6 374,392 - DDA3937_RS01685 0.67 -0.6 374,399 + DDA3937_RS01685 0.68 -1.0 374,399 + DDA3937_RS01685 0.68 -0.3 374,399 + DDA3937_RS01685 0.68 +0.0 374,399 + DDA3937_RS01685 0.68 +0.9 374,431 + DDA3937_RS01685 0.72 +0.2 374,432 - DDA3937_RS01685 0.72 -0.5 374,432 - DDA3937_RS01685 0.72 -0.0 374,432 - DDA3937_RS01685 0.72 +1.0 374,553 + DDA3937_RS01685 0.88 +1.8 374,553 + DDA3937_RS01685 0.88 +5.5 374,554 - DDA3937_RS01685 0.89 -0.6 374,634 + -0.4 374,731 + +1.0 374,731 + -1.3 374,732 - -0.9 374,732 - +1.3 374,732 - +1.1 374,732 - -0.7 374,732 - -0.7 374,732 - +1.3 374,740 - +0.1 374,786 - -1.0 374,786 - -0.6 374,786 - -0.1 374,826 + +2.2 374,827 - -0.3 374,827 - +0.4 374,860 + +1.7 374,910 + DDA3937_RS01690 0.14 -0.3 374,910 + DDA3937_RS01690 0.14 +2.8 374,921 - DDA3937_RS01690 0.14 +2.0 374,921 - DDA3937_RS01690 0.14 +2.8 374,921 - DDA3937_RS01690 0.14 +0.0 374,921 - DDA3937_RS01690 0.14 -0.7 375,009 + DDA3937_RS01690 0.21 -0.6 375,009 + DDA3937_RS01690 0.21 -0.7 375,010 - DDA3937_RS01690 0.21 -0.4 375,010 - DDA3937_RS01690 0.21 +0.1 375,010 - +1.7 375,010 - DDA3937_RS01690 0.21 -1.3 375,010 - DDA3937_RS01690 0.21 +0.3 375,010 - DDA3937_RS01690 0.21 -0.9 375,027 + DDA3937_RS01690 0.23 -2.7 375,027 + DDA3937_RS01690 0.23 -0.3 375,151 + DDA3937_RS01690 0.32 -0.1 375,151 + DDA3937_RS01690 0.32 -1.8 375,152 - DDA3937_RS01690 0.32 -1.6 375,158 - DDA3937_RS01690 0.33 -1.2 375,158 - DDA3937_RS01690 0.33 -0.4 375,158 - DDA3937_RS01690 0.33 -0.2 375,158 - DDA3937_RS01690 0.33 -1.0 375,158 - DDA3937_RS01690 0.33 +0.0 375,174 + DDA3937_RS01690 0.34 -0.9 375,174 + DDA3937_RS01690 0.34 -0.6 375,174 + DDA3937_RS01690 0.34 +0.5 375,175 - DDA3937_RS01690 0.34 -1.3 375,175 - DDA3937_RS01690 0.34 +1.8 375,195 + DDA3937_RS01690 0.35 +1.7 375,195 + DDA3937_RS01690 0.35 +0.8 375,233 + DDA3937_RS01690 0.38 +3.0 375,233 + DDA3937_RS01690 0.38 +0.5 375,234 - DDA3937_RS01690 0.38 -1.7 375,237 - DDA3937_RS01690 0.39 -1.3 375,252 - DDA3937_RS01690 0.40 -0.5 375,252 - DDA3937_RS01690 0.40 -0.3 375,260 + DDA3937_RS01690 0.40 -0.3 375,266 - DDA3937_RS01690 0.41 -0.9 375,266 - DDA3937_RS01690 0.41 -1.5 375,266 - DDA3937_RS01690 0.41 -1.7 375,270 + DDA3937_RS01690 0.41 -1.1 375,271 - DDA3937_RS01690 0.41 +0.2 375,364 + DDA3937_RS01690 0.48 -0.7 375,364 + DDA3937_RS01690 0.48 -1.9 375,365 - DDA3937_RS01690 0.49 -0.1 375,365 - DDA3937_RS01690 0.49 -2.2 375,429 + DDA3937_RS01690 0.53 -1.9 375,430 - DDA3937_RS01690 0.54 -0.9 375,430 - DDA3937_RS01690 0.54 -2.2 375,430 - DDA3937_RS01690 0.54 +1.1 375,455 + DDA3937_RS01690 0.55 +0.4 375,485 + DDA3937_RS01690 0.58 -1.0 375,485 + DDA3937_RS01690 0.58 -0.4 375,485 + DDA3937_RS01690 0.58 -0.9 375,486 - DDA3937_RS01690 0.58 -0.4 375,486 - DDA3937_RS01690 0.58 +2.4 375,494 + DDA3937_RS01690 0.58 +0.7 375,494 + DDA3937_RS01690 0.58 -0.5 375,494 + DDA3937_RS01690 0.58 -0.2 375,494 + DDA3937_RS01690 0.58 +0.1 375,494 + DDA3937_RS01690 0.58 -2.1 375,494 + DDA3937_RS01690 0.58 -0.2 375,494 + DDA3937_RS01690 0.58 -1.1 375,495 - DDA3937_RS01690 0.59 -0.6 375,495 - DDA3937_RS01690 0.59 +2.5 375,501 + DDA3937_RS01690 0.59 -0.5 375,502 - DDA3937_RS01690 0.59 -0.3 375,532 - DDA3937_RS01690 0.61 -0.9 375,532 - DDA3937_RS01690 0.61 -1.7
Or see this region's nucleotide sequence