Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01240 and DDA3937_RS01245 are separated by 108 nucleotides DDA3937_RS01245 and DDA3937_RS01250 are separated by 257 nucleotides DDA3937_RS01250 and DDA3937_RS01255 are separated by 76 nucleotides DDA3937_RS01255 and DDA3937_RS01260 are separated by 8 nucleotides
DDA3937_RS01240: DDA3937_RS01240 - 23S ribosomal RNA, at 280,542 to 283,449
_RS01240
DDA3937_RS01245: DDA3937_RS01245 - 5S ribosomal RNA, at 283,558 to 283,673
_RS01245
DDA3937_RS01250: DDA3937_RS01250 - molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 283,931 to 284,167
_RS01250
DDA3937_RS01255: DDA3937_RS01255 - amino acid ABC transporter ATP-binding protein, at 284,244 to 285,005
_RS01255
DDA3937_RS01260: DDA3937_RS01260 - amino acid ABC transporter permease, at 285,014 to 286,108
_RS01260
Position (kb) 283
284
285 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 283.678 kb on + strand at 283.680 kb on + strand at 283.975 kb on + strand, within DDA3937_RS01250 at 283.979 kb on + strand, within DDA3937_RS01250 at 284.170 kb on + strand at 284.241 kb on + strand at 284.245 kb on + strand at 284.246 kb on - strand at 284.246 kb on - strand at 284.254 kb on - strand at 284.276 kb on + strand at 284.276 kb on + strand at 284.277 kb on - strand at 284.572 kb on + strand, within DDA3937_RS01255 at 284.611 kb on + strand, within DDA3937_RS01255 at 284.612 kb on - strand, within DDA3937_RS01255 at 284.612 kb on - strand, within DDA3937_RS01255 at 284.612 kb on - strand, within DDA3937_RS01255 at 284.676 kb on - strand, within DDA3937_RS01255 at 284.676 kb on - strand, within DDA3937_RS01255 at 284.756 kb on + strand, within DDA3937_RS01255 at 284.790 kb on + strand, within DDA3937_RS01255 at 284.790 kb on + strand, within DDA3937_RS01255 at 284.831 kb on + strand, within DDA3937_RS01255 at 284.882 kb on + strand, within DDA3937_RS01255 at 284.882 kb on + strand at 284.882 kb on + strand, within DDA3937_RS01255 at 284.882 kb on + strand, within DDA3937_RS01255 at 284.883 kb on - strand, within DDA3937_RS01255 at 284.883 kb on - strand, within DDA3937_RS01255 at 284.912 kb on + strand, within DDA3937_RS01255 at 284.913 kb on - strand, within DDA3937_RS01255 at 284.922 kb on + strand, within DDA3937_RS01255 at 284.922 kb on + strand, within DDA3937_RS01255 at 284.923 kb on - strand at 284.938 kb on + strand at 284.945 kb on + strand at 284.945 kb on + strand at 284.945 kb on + strand at 284.946 kb on - strand at 284.946 kb on - strand at 284.946 kb on - strand at 284.972 kb on - strand at 285.050 kb on + strand at 285.061 kb on + strand at 285.061 kb on + strand at 285.110 kb on + strand at 285.110 kb on + strand at 285.110 kb on + strand at 285.110 kb on + strand at 285.111 kb on - strand at 285.111 kb on - strand at 285.111 kb on - strand at 285.111 kb on - strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 283,678 + +0.8 283,680 + +0.8 283,975 + DDA3937_RS01250 0.19 -1.7 283,979 + DDA3937_RS01250 0.20 -1.1 284,170 + -0.4 284,241 + -1.0 284,245 + +0.8 284,246 - -0.6 284,246 - +4.2 284,254 - -1.7 284,276 + +0.4 284,276 + -0.3 284,277 - -1.6 284,572 + DDA3937_RS01255 0.43 -0.5 284,611 + DDA3937_RS01255 0.48 -0.2 284,612 - DDA3937_RS01255 0.48 -1.0 284,612 - DDA3937_RS01255 0.48 +3.1 284,612 - DDA3937_RS01255 0.48 +0.2 284,676 - DDA3937_RS01255 0.57 -0.9 284,676 - DDA3937_RS01255 0.57 +0.2 284,756 + DDA3937_RS01255 0.67 +0.0 284,790 + DDA3937_RS01255 0.72 -0.3 284,790 + DDA3937_RS01255 0.72 -0.1 284,831 + DDA3937_RS01255 0.77 +2.7 284,882 + DDA3937_RS01255 0.84 -0.0 284,882 + -0.2 284,882 + DDA3937_RS01255 0.84 -0.3 284,882 + DDA3937_RS01255 0.84 -1.0 284,883 - DDA3937_RS01255 0.84 -0.2 284,883 - DDA3937_RS01255 0.84 -0.6 284,912 + DDA3937_RS01255 0.88 -0.6 284,913 - DDA3937_RS01255 0.88 -0.3 284,922 + DDA3937_RS01255 0.89 -0.0 284,922 + DDA3937_RS01255 0.89 -1.0 284,923 - +1.3 284,938 + -1.2 284,945 + -1.2 284,945 + -0.2 284,945 + -0.0 284,946 - -0.7 284,946 - -1.0 284,946 - -0.5 284,972 - +0.4 285,050 + +0.8 285,061 + -0.2 285,061 + -1.6 285,110 + +0.6 285,110 + +1.0 285,110 + -1.1 285,110 + +0.3 285,111 - -1.1 285,111 - +0.0 285,111 - -1.1 285,111 - -1.1 285,114 + +0.2 285,114 + -0.9 285,114 + +0.8 285,114 + -2.0 285,114 + +0.0 285,114 + -1.6 285,114 + +0.3 285,114 + -1.2 285,114 + +0.2 285,114 + -3.3 285,114 + -0.8 285,115 - -0.3 285,115 - +0.6 285,115 - +0.9 285,115 - -0.2 285,115 - -1.5 285,115 - -0.2 285,115 - -0.5 285,115 - +0.3
Or see this region's nucleotide sequence