Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01205 and DDA3937_RS01210 are separated by 4 nucleotides DDA3937_RS01210 and DDA3937_RS01215 are separated by 84 nucleotides DDA3937_RS01215 and DDA3937_RS01220 are separated by 15 nucleotides
DDA3937_RS01205: DDA3937_RS01205 - DNA-binding protein HU-alpha, at 273,939 to 274,211
_RS01205
DDA3937_RS01210: DDA3937_RS01210 - DUF1481 domain-containing protein, at 274,216 to 274,926
_RS01210
DDA3937_RS01215: DDA3937_RS01215 - phosphoribosylamine--glycine ligase, at 275,011 to 276,300
_RS01215
DDA3937_RS01220: DDA3937_RS01220 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 276,316 to 277,905
_RS01220
Position (kb) 275
276
277 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 274.209 kb on + strand at 274.210 kb on - strand at 274.323 kb on + strand, within DDA3937_RS01210 at 274.324 kb on - strand, within DDA3937_RS01210 at 274.324 kb on - strand, within DDA3937_RS01210 at 274.324 kb on - strand, within DDA3937_RS01210 at 274.324 kb on - strand, within DDA3937_RS01210 at 274.332 kb on + strand, within DDA3937_RS01210 at 274.333 kb on - strand, within DDA3937_RS01210 at 274.351 kb on + strand, within DDA3937_RS01210 at 274.351 kb on + strand, within DDA3937_RS01210 at 274.352 kb on - strand, within DDA3937_RS01210 at 274.385 kb on + strand, within DDA3937_RS01210 at 274.385 kb on + strand, within DDA3937_RS01210 at 274.399 kb on - strand, within DDA3937_RS01210 at 274.399 kb on - strand, within DDA3937_RS01210 at 274.451 kb on + strand at 274.452 kb on - strand, within DDA3937_RS01210 at 274.522 kb on + strand, within DDA3937_RS01210 at 274.522 kb on + strand, within DDA3937_RS01210 at 274.523 kb on - strand, within DDA3937_RS01210 at 274.582 kb on + strand, within DDA3937_RS01210 at 274.582 kb on + strand, within DDA3937_RS01210 at 274.582 kb on + strand, within DDA3937_RS01210 at 274.583 kb on - strand, within DDA3937_RS01210 at 274.583 kb on - strand, within DDA3937_RS01210 at 274.583 kb on - strand, within DDA3937_RS01210 at 274.583 kb on - strand, within DDA3937_RS01210 at 274.700 kb on + strand, within DDA3937_RS01210 at 274.701 kb on - strand, within DDA3937_RS01210 at 274.701 kb on - strand, within DDA3937_RS01210 at 274.701 kb on - strand, within DDA3937_RS01210 at 274.925 kb on - strand at 274.938 kb on + strand at 274.938 kb on + strand at 274.938 kb on + strand at 274.939 kb on - strand at 274.939 kb on - strand at 274.939 kb on - strand at 274.939 kb on - strand at 274.939 kb on - strand at 274.939 kb on - strand at 274.939 kb on - strand at 274.948 kb on - strand at 275.006 kb on + strand at 275.079 kb on + strand at 275.079 kb on + strand at 275.080 kb on - strand at 275.080 kb on - strand at 275.099 kb on + strand at 275.099 kb on + strand at 275.377 kb on + strand, within DDA3937_RS01215 at 275.378 kb on - strand, within DDA3937_RS01215 at 275.378 kb on - strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.505 kb on - strand, within DDA3937_RS01215 at 275.505 kb on - strand, within DDA3937_RS01215 at 275.547 kb on + strand, within DDA3937_RS01215 at 275.547 kb on + strand, within DDA3937_RS01215 at 275.548 kb on - strand, within DDA3937_RS01215 at 275.548 kb on - strand, within DDA3937_RS01215 at 275.548 kb on - strand, within DDA3937_RS01215 at 275.603 kb on + strand, within DDA3937_RS01215 at 275.603 kb on + strand, within DDA3937_RS01215 at 275.603 kb on + strand, within DDA3937_RS01215 at 275.710 kb on - strand, within DDA3937_RS01215 at 275.900 kb on + strand, within DDA3937_RS01215 at 275.900 kb on + strand, within DDA3937_RS01215 at 275.901 kb on - strand, within DDA3937_RS01215 at 275.901 kb on - strand, within DDA3937_RS01215 at 275.901 kb on - strand, within DDA3937_RS01215 at 275.901 kb on - strand, within DDA3937_RS01215 at 275.936 kb on + strand, within DDA3937_RS01215 at 275.952 kb on + strand, within DDA3937_RS01215 at 275.953 kb on - strand, within DDA3937_RS01215 at 276.096 kb on + strand, within DDA3937_RS01215 at 276.097 kb on - strand, within DDA3937_RS01215 at 276.097 kb on - strand, within DDA3937_RS01215 at 276.215 kb on + strand at 276.215 kb on + strand at 276.215 kb on + strand at 276.216 kb on - strand at 276.285 kb on + strand at 276.294 kb on + strand at 276.295 kb on - strand at 276.307 kb on - strand at 276.307 kb on - strand at 276.317 kb on + strand at 276.318 kb on - strand at 276.318 kb on - strand at 276.433 kb on + strand at 276.591 kb on + strand, within DDA3937_RS01220 at 276.591 kb on + strand, within DDA3937_RS01220 at 276.591 kb on + strand, within DDA3937_RS01220 at 276.591 kb on + strand, within DDA3937_RS01220 at 276.591 kb on + strand, within DDA3937_RS01220 at 276.591 kb on + strand, within DDA3937_RS01220 at 276.591 kb on + strand, within DDA3937_RS01220 at 276.625 kb on - strand, within DDA3937_RS01220 at 276.820 kb on + strand, within DDA3937_RS01220 at 276.820 kb on + strand, within DDA3937_RS01220 at 276.821 kb on - strand, within DDA3937_RS01220 at 276.984 kb on - strand, within DDA3937_RS01220 at 276.984 kb on - strand, within DDA3937_RS01220 at 276.995 kb on + strand, within DDA3937_RS01220 at 277.121 kb on + strand, within DDA3937_RS01220 at 277.155 kb on + strand, within DDA3937_RS01220 at 277.155 kb on + strand, within DDA3937_RS01220 at 277.160 kb on - strand, within DDA3937_RS01220 at 277.186 kb on + strand, within DDA3937_RS01220 at 277.187 kb on - strand, within DDA3937_RS01220 at 277.187 kb on - strand, within DDA3937_RS01220 at 277.189 kb on - strand, within DDA3937_RS01220 at 277.190 kb on + strand, within DDA3937_RS01220 at 277.190 kb on + strand, within DDA3937_RS01220 at 277.190 kb on + strand, within DDA3937_RS01220 at 277.190 kb on + strand, within DDA3937_RS01220 at 277.190 kb on + strand, within DDA3937_RS01220 at 277.190 kb on + strand, within DDA3937_RS01220 at 277.191 kb on - strand, within DDA3937_RS01220 at 277.191 kb on - strand, within DDA3937_RS01220 at 277.191 kb on - strand, within DDA3937_RS01220 at 277.191 kb on - strand, within DDA3937_RS01220 at 277.191 kb on - strand, within DDA3937_RS01220
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 274,209 + -1.2 274,210 - -2.2 274,323 + DDA3937_RS01210 0.15 -0.4 274,324 - DDA3937_RS01210 0.15 +0.0 274,324 - DDA3937_RS01210 0.15 +0.4 274,324 - DDA3937_RS01210 0.15 +0.5 274,324 - DDA3937_RS01210 0.15 -1.0 274,332 + DDA3937_RS01210 0.16 -1.4 274,333 - DDA3937_RS01210 0.16 +0.2 274,351 + DDA3937_RS01210 0.19 -0.8 274,351 + DDA3937_RS01210 0.19 -0.6 274,352 - DDA3937_RS01210 0.19 +0.7 274,385 + DDA3937_RS01210 0.24 -0.6 274,385 + DDA3937_RS01210 0.24 -0.7 274,399 - DDA3937_RS01210 0.26 -1.1 274,399 - DDA3937_RS01210 0.26 -0.6 274,451 + -0.6 274,452 - DDA3937_RS01210 0.33 -2.1 274,522 + DDA3937_RS01210 0.43 -0.2 274,522 + DDA3937_RS01210 0.43 -1.3 274,523 - DDA3937_RS01210 0.43 -1.0 274,582 + DDA3937_RS01210 0.51 -0.2 274,582 + DDA3937_RS01210 0.51 -1.2 274,582 + DDA3937_RS01210 0.51 +0.2 274,583 - DDA3937_RS01210 0.52 -0.2 274,583 - DDA3937_RS01210 0.52 -1.2 274,583 - DDA3937_RS01210 0.52 +0.3 274,583 - DDA3937_RS01210 0.52 -0.2 274,700 + DDA3937_RS01210 0.68 +1.4 274,701 - DDA3937_RS01210 0.68 +0.4 274,701 - DDA3937_RS01210 0.68 -0.6 274,701 - DDA3937_RS01210 0.68 +2.1 274,925 - +0.0 274,938 + -0.1 274,938 + -0.7 274,938 + +0.9 274,939 - -0.6 274,939 - -1.2 274,939 - +0.4 274,939 - -0.4 274,939 - -0.6 274,939 - -0.4 274,939 - -0.6 274,948 - +0.9 275,006 + -0.2 275,079 + +1.0 275,079 + +0.6 275,080 - -2.9 275,080 - -0.8 275,099 + -1.6 275,099 + -2.7 275,377 + DDA3937_RS01215 0.28 -1.2 275,378 - DDA3937_RS01215 0.28 +0.8 275,378 - DDA3937_RS01215 0.28 -2.8 275,504 + DDA3937_RS01215 0.38 -1.8 275,504 + DDA3937_RS01215 0.38 -0.6 275,504 + DDA3937_RS01215 0.38 +0.8 275,504 + DDA3937_RS01215 0.38 -1.9 275,504 + DDA3937_RS01215 0.38 -0.8 275,504 + DDA3937_RS01215 0.38 -3.4 275,505 - DDA3937_RS01215 0.38 -1.6 275,505 - DDA3937_RS01215 0.38 -1.2 275,547 + DDA3937_RS01215 0.42 -0.6 275,547 + DDA3937_RS01215 0.42 -1.4 275,548 - DDA3937_RS01215 0.42 -3.3 275,548 - DDA3937_RS01215 0.42 -2.3 275,548 - DDA3937_RS01215 0.42 -0.4 275,603 + DDA3937_RS01215 0.46 -1.4 275,603 + DDA3937_RS01215 0.46 -2.6 275,603 + DDA3937_RS01215 0.46 -0.9 275,710 - DDA3937_RS01215 0.54 -0.7 275,900 + DDA3937_RS01215 0.69 -1.1 275,900 + DDA3937_RS01215 0.69 +2.5 275,901 - DDA3937_RS01215 0.69 -0.6 275,901 - DDA3937_RS01215 0.69 -1.2 275,901 - DDA3937_RS01215 0.69 -1.9 275,901 - DDA3937_RS01215 0.69 -0.6 275,936 + DDA3937_RS01215 0.72 -1.8 275,952 + DDA3937_RS01215 0.73 -0.2 275,953 - DDA3937_RS01215 0.73 +0.2 276,096 + DDA3937_RS01215 0.84 -0.2 276,097 - DDA3937_RS01215 0.84 -2.0 276,097 - DDA3937_RS01215 0.84 -1.9 276,215 + -0.8 276,215 + -1.7 276,215 + -1.2 276,216 - -3.2 276,285 + -0.6 276,294 + -2.3 276,295 - -0.5 276,307 - -1.4 276,307 - -0.2 276,317 + +0.5 276,318 - -0.1 276,318 - -0.7 276,433 + -2.6 276,591 + DDA3937_RS01220 0.17 +1.0 276,591 + DDA3937_RS01220 0.17 -2.1 276,591 + DDA3937_RS01220 0.17 -1.7 276,591 + DDA3937_RS01220 0.17 -3.1 276,591 + DDA3937_RS01220 0.17 -2.5 276,591 + DDA3937_RS01220 0.17 -0.6 276,591 + DDA3937_RS01220 0.17 -0.8 276,625 - DDA3937_RS01220 0.19 -2.6 276,820 + DDA3937_RS01220 0.32 -2.6 276,820 + DDA3937_RS01220 0.32 -1.9 276,821 - DDA3937_RS01220 0.32 -1.4 276,984 - DDA3937_RS01220 0.42 -0.6 276,984 - DDA3937_RS01220 0.42 -4.1 276,995 + DDA3937_RS01220 0.43 -3.1 277,121 + DDA3937_RS01220 0.51 -1.2 277,155 + DDA3937_RS01220 0.53 -0.5 277,155 + DDA3937_RS01220 0.53 -1.8 277,160 - DDA3937_RS01220 0.53 -1.7 277,186 + DDA3937_RS01220 0.55 -1.4 277,187 - DDA3937_RS01220 0.55 -2.2 277,187 - DDA3937_RS01220 0.55 -1.4 277,189 - DDA3937_RS01220 0.55 -1.3 277,190 + DDA3937_RS01220 0.55 -2.1 277,190 + DDA3937_RS01220 0.55 +1.3 277,190 + DDA3937_RS01220 0.55 -2.9 277,190 + DDA3937_RS01220 0.55 +0.0 277,190 + DDA3937_RS01220 0.55 -0.7 277,190 + DDA3937_RS01220 0.55 -0.2 277,191 - DDA3937_RS01220 0.55 -0.2 277,191 - DDA3937_RS01220 0.55 +1.0 277,191 - DDA3937_RS01220 0.55 -1.8 277,191 - DDA3937_RS01220 0.55 -1.0 277,191 - DDA3937_RS01220 0.55 -2.8
Or see this region's nucleotide sequence