Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00975

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00970 and DDA3937_RS00975 are separated by 83 nucleotidesDDA3937_RS00975 and DDA3937_RS00980 are separated by 206 nucleotidesDDA3937_RS00980 and DDA3937_RS00985 are separated by 14 nucleotides DDA3937_RS00970: DDA3937_RS00970 - DNA-binding transcriptional regulator OxyR, at 223,626 to 224,543 _RS00970 DDA3937_RS00975: DDA3937_RS00975 - Si-specific NAD(P)(+) transhydrogenase, at 224,627 to 226,027 _RS00975 DDA3937_RS00980: DDA3937_RS00980 - HTH-type transcriptional repressor FabR, at 226,234 to 226,872 _RS00980 DDA3937_RS00985: DDA3937_RS00985 - YijD family membrane protein, at 226,887 to 227,261 _RS00985 Position (kb) 224 225 226 227Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 223.631 kb on + strandat 223.631 kb on + strandat 223.642 kb on + strandat 223.642 kb on + strandat 223.643 kb on - strandat 223.643 kb on - strandat 223.643 kb on - strandat 223.992 kb on + strand, within DDA3937_RS00970at 223.992 kb on + strandat 223.993 kb on - strand, within DDA3937_RS00970at 224.333 kb on + strand, within DDA3937_RS00970at 224.337 kb on - strand, within DDA3937_RS00970at 224.392 kb on - strand, within DDA3937_RS00970at 224.392 kb on - strand, within DDA3937_RS00970at 224.404 kb on - strand, within DDA3937_RS00970at 224.439 kb on + strand, within DDA3937_RS00970at 224.440 kb on - strand, within DDA3937_RS00970at 224.440 kb on - strand, within DDA3937_RS00970at 224.470 kb on - strandat 224.470 kb on - strandat 224.542 kb on - strandat 224.576 kb on - strandat 224.578 kb on + strandat 224.579 kb on - strandat 224.579 kb on - strandat 224.911 kb on - strand, within DDA3937_RS00975at 224.977 kb on - strand, within DDA3937_RS00975at 225.538 kb on - strand, within DDA3937_RS00975at 225.659 kb on - strand, within DDA3937_RS00975at 225.910 kb on + strandat 225.924 kb on - strandat 226.015 kb on - strandat 226.053 kb on + strandat 226.054 kb on - strandat 226.077 kb on - strandat 226.093 kb on + strandat 226.117 kb on + strandat 226.117 kb on + strandat 226.142 kb on - strandat 226.142 kb on - strandat 226.144 kb on + strandat 226.164 kb on + strandat 226.164 kb on + strandat 226.164 kb on + strandat 226.164 kb on + strandat 226.164 kb on + strandat 226.164 kb on + strandat 226.164 kb on + strandat 226.164 kb on + strandat 226.164 kb on + strandat 226.164 kb on + strandat 226.165 kb on - strandat 226.165 kb on - strandat 226.165 kb on - strandat 226.165 kb on - strandat 226.165 kb on - strandat 226.165 kb on - strandat 226.165 kb on - strandat 226.165 kb on - strandat 226.168 kb on + strandat 226.168 kb on + strandat 226.168 kb on + strandat 226.169 kb on - strandat 226.176 kb on - strandat 226.185 kb on + strandat 226.186 kb on - strandat 226.186 kb on - strandat 226.186 kb on - strandat 226.187 kb on + strandat 226.187 kb on + strandat 226.187 kb on + strandat 226.187 kb on + strandat 226.187 kb on + strandat 226.188 kb on - strandat 226.188 kb on - strandat 226.188 kb on - strandat 226.188 kb on - strandat 226.188 kb on - strandat 226.188 kb on - strandat 226.188 kb on - strandat 226.188 kb on - strandat 226.188 kb on - strandat 226.188 kb on - strandat 226.188 kb on - strandat 226.188 kb on - strandat 226.204 kb on + strandat 226.204 kb on + strandat 226.205 kb on - strandat 226.205 kb on - strandat 226.205 kb on - strandat 226.205 kb on - strandat 226.205 kb on - strandat 226.205 kb on - strandat 226.232 kb on + strandat 226.301 kb on + strand, within DDA3937_RS00980at 226.301 kb on + strand, within DDA3937_RS00980at 226.302 kb on - strand, within DDA3937_RS00980at 226.302 kb on - strand, within DDA3937_RS00980at 226.368 kb on + strand, within DDA3937_RS00980at 226.379 kb on - strand, within DDA3937_RS00980at 226.473 kb on + strand, within DDA3937_RS00980at 226.473 kb on + strand, within DDA3937_RS00980at 226.539 kb on + strand, within DDA3937_RS00980at 226.539 kb on + strand, within DDA3937_RS00980at 226.608 kb on - strand, within DDA3937_RS00980at 226.629 kb on + strand, within DDA3937_RS00980at 226.648 kb on + strand, within DDA3937_RS00980at 226.648 kb on + strand, within DDA3937_RS00980at 226.648 kb on + strand, within DDA3937_RS00980at 226.648 kb on + strand, within DDA3937_RS00980at 226.649 kb on - strand, within DDA3937_RS00980at 226.649 kb on - strand, within DDA3937_RS00980at 226.649 kb on - strand, within DDA3937_RS00980at 226.669 kb on - strand, within DDA3937_RS00980at 226.718 kb on + strand, within DDA3937_RS00980at 226.719 kb on - strand, within DDA3937_RS00980at 226.800 kb on + strand, within DDA3937_RS00980at 226.800 kb on + strand, within DDA3937_RS00980at 226.800 kb on + strand, within DDA3937_RS00980at 226.800 kb on + strand, within DDA3937_RS00980at 226.801 kb on - strand, within DDA3937_RS00980at 226.801 kb on - strand, within DDA3937_RS00980at 226.801 kb on - strand, within DDA3937_RS00980at 226.801 kb on - strand, within DDA3937_RS00980at 226.801 kb on - strand, within DDA3937_RS00980at 226.801 kb on - strand, within DDA3937_RS00980at 226.819 kb on + strandat 226.820 kb on - strandat 226.820 kb on - strandat 226.820 kb on - strandat 226.820 kb on - strandat 226.820 kb on - strandat 226.820 kb on - strandat 226.822 kb on + strandat 226.822 kb on + strandat 226.822 kb on + strandat 226.822 kb on + strandat 226.823 kb on - strandat 226.823 kb on - strandat 226.871 kb on - strandat 226.900 kb on + strandat 226.901 kb on - strandat 226.982 kb on + strand, within DDA3937_RS00985at 226.982 kb on + strand, within DDA3937_RS00985at 226.983 kb on - strand, within DDA3937_RS00985at 226.983 kb on - strand, within DDA3937_RS00985at 227.017 kb on + strand, within DDA3937_RS00985

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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223,631 + -1.2
223,631 + +0.4
223,642 + -2.2
223,642 + +1.2
223,643 - +0.3
223,643 - +0.8
223,643 - -1.8
223,992 + DDA3937_RS00970 0.40 +0.8
223,992 + +0.2
223,993 - DDA3937_RS00970 0.40 +0.8
224,333 + DDA3937_RS00970 0.77 +0.6
224,337 - DDA3937_RS00970 0.77 +0.2
224,392 - DDA3937_RS00970 0.83 -0.8
224,392 - DDA3937_RS00970 0.83 +0.8
224,404 - DDA3937_RS00970 0.85 -0.7
224,439 + DDA3937_RS00970 0.89 -0.5
224,440 - DDA3937_RS00970 0.89 +0.4
224,440 - DDA3937_RS00970 0.89 -1.7
224,470 - -1.4
224,470 - +0.5
224,542 - -0.0
224,576 - -0.7
224,578 + +1.1
224,579 - -0.4
224,579 - +1.2
224,911 - DDA3937_RS00975 0.20 -2.3
224,977 - DDA3937_RS00975 0.25 -0.8
225,538 - DDA3937_RS00975 0.65 +0.3
225,659 - DDA3937_RS00975 0.74 +0.2
225,910 + +1.8
225,924 - -0.2
226,015 - -0.4
226,053 + -0.6
226,054 - +2.8
226,077 - +1.8
226,093 + -1.2
226,117 + +0.3
226,117 + -1.2
226,142 - -0.2
226,142 - +0.3
226,144 + -0.7
226,164 + -2.2
226,164 + -0.5
226,164 + -0.8
226,164 + -0.4
226,164 + -0.8
226,164 + -0.6
226,164 + -0.2
226,164 + -0.9
226,164 + +1.1
226,164 + -0.7
226,165 - +2.2
226,165 - -1.7
226,165 - -0.8
226,165 - +0.1
226,165 - -0.7
226,165 - -1.4
226,165 - -1.4
226,165 - -2.1
226,168 + -0.6
226,168 + -0.8
226,168 + +0.0
226,169 - -0.9
226,176 - -0.8
226,185 + +0.2
226,186 - -1.0
226,186 - -2.8
226,186 - -0.6
226,187 + +0.8
226,187 + -0.2
226,187 + -1.1
226,187 + -3.3
226,187 + +0.3
226,188 - -0.5
226,188 - -1.6
226,188 - +1.4
226,188 - -0.4
226,188 - -0.2
226,188 - -0.4
226,188 - -1.2
226,188 - -0.7
226,188 - +0.1
226,188 - +5.3
226,188 - +0.2
226,188 - +3.8
226,204 + +0.2
226,204 + -0.8
226,205 - +0.5
226,205 - +0.2
226,205 - +0.3
226,205 - -0.6
226,205 - -1.1
226,205 - -1.1
226,232 + -0.3
226,301 + DDA3937_RS00980 0.10 -1.3
226,301 + DDA3937_RS00980 0.10 -0.7
226,302 - DDA3937_RS00980 0.11 -0.5
226,302 - DDA3937_RS00980 0.11 -0.4
226,368 + DDA3937_RS00980 0.21 -0.4
226,379 - DDA3937_RS00980 0.23 -0.5
226,473 + DDA3937_RS00980 0.37 +0.0
226,473 + DDA3937_RS00980 0.37 -1.3
226,539 + DDA3937_RS00980 0.48 -0.7
226,539 + DDA3937_RS00980 0.48 -0.6
226,608 - DDA3937_RS00980 0.59 +0.3
226,629 + DDA3937_RS00980 0.62 -0.1
226,648 + DDA3937_RS00980 0.65 -0.9
226,648 + DDA3937_RS00980 0.65 -0.1
226,648 + DDA3937_RS00980 0.65 -1.0
226,648 + DDA3937_RS00980 0.65 -1.0
226,649 - DDA3937_RS00980 0.65 -0.3
226,649 - DDA3937_RS00980 0.65 -1.0
226,649 - DDA3937_RS00980 0.65 -1.1
226,669 - DDA3937_RS00980 0.68 -0.8
226,718 + DDA3937_RS00980 0.76 -0.8
226,719 - DDA3937_RS00980 0.76 -1.6
226,800 + DDA3937_RS00980 0.89 -0.8
226,800 + DDA3937_RS00980 0.89 +2.8
226,800 + DDA3937_RS00980 0.89 -0.1
226,800 + DDA3937_RS00980 0.89 -0.2
226,801 - DDA3937_RS00980 0.89 +0.5
226,801 - DDA3937_RS00980 0.89 -1.5
226,801 - DDA3937_RS00980 0.89 +0.5
226,801 - DDA3937_RS00980 0.89 -0.8
226,801 - DDA3937_RS00980 0.89 -1.1
226,801 - DDA3937_RS00980 0.89 -0.8
226,819 + -0.2
226,820 - -0.4
226,820 - +0.4
226,820 - -0.2
226,820 - +1.5
226,820 - -0.4
226,820 - +0.1
226,822 + -0.1
226,822 + -0.6
226,822 + -0.1
226,822 + -1.3
226,823 - -0.2
226,823 - -1.1
226,871 - +2.2
226,900 + -0.8
226,901 - -0.2
226,982 + DDA3937_RS00985 0.25 +0.4
226,982 + DDA3937_RS00985 0.25 -0.1
226,983 - DDA3937_RS00985 0.26 -0.6
226,983 - DDA3937_RS00985 0.26 -1.0
227,017 + DDA3937_RS00985 0.35 +0.2

Or see this region's nucleotide sequence