Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00565 and DDA3937_RS00570 are separated by 18 nucleotides DDA3937_RS00570 and DDA3937_RS21740 overlap by 16 nucleotides DDA3937_RS21740 and DDA3937_RS00575 are separated by 68 nucleotides DDA3937_RS00575 and DDA3937_RS00580 are separated by 312 nucleotides
DDA3937_RS00565: DDA3937_RS00565 - virulence RhuM family protein, at 135,723 to 136,748
_RS00565
DDA3937_RS00570: DDA3937_RS00570 - hypothetical protein, at 136,767 to 137,036
_RS00570
DDA3937_RS21740: DDA3937_RS21740 - type I restriction-modification system subunit M N-terminal domain-containing protein, at 137,021 to 137,359
_RS21740
DDA3937_RS00575: DDA3937_RS00575 - type II toxin-antitoxin system RelB/DinJ family antitoxin, at 137,428 to 137,928
_RS00575
DDA3937_RS00580: DDA3937_RS00580 - 2-dehydro-3-deoxygluconokinase, at 138,241 to 139,173
_RS00580
Position (kb) 137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 136.464 kb on + strand, within DDA3937_RS00565 at 136.486 kb on + strand, within DDA3937_RS00565 at 136.498 kb on + strand, within DDA3937_RS00565 at 136.568 kb on + strand, within DDA3937_RS00565 at 136.583 kb on + strand, within DDA3937_RS00565 at 136.615 kb on + strand, within DDA3937_RS00565 at 136.615 kb on + strand, within DDA3937_RS00565 at 136.615 kb on + strand, within DDA3937_RS00565 at 136.617 kb on + strand, within DDA3937_RS00565 at 136.617 kb on + strand, within DDA3937_RS00565 at 136.617 kb on + strand, within DDA3937_RS00565 at 136.626 kb on + strand, within DDA3937_RS00565 at 136.626 kb on + strand, within DDA3937_RS00565 at 136.626 kb on + strand, within DDA3937_RS00565 at 136.626 kb on + strand, within DDA3937_RS00565 at 136.626 kb on + strand, within DDA3937_RS00565 at 136.626 kb on + strand, within DDA3937_RS00565 at 136.739 kb on + strand at 136.750 kb on + strand at 136.750 kb on + strand at 136.781 kb on + strand at 136.781 kb on + strand at 136.782 kb on - strand at 136.785 kb on - strand at 136.785 kb on - strand at 136.785 kb on - strand at 136.785 kb on - strand at 136.819 kb on + strand, within DDA3937_RS00570 at 136.819 kb on + strand, within DDA3937_RS00570 at 136.820 kb on - strand, within DDA3937_RS00570 at 136.820 kb on - strand, within DDA3937_RS00570 at 136.820 kb on - strand, within DDA3937_RS00570 at 136.820 kb on - strand, within DDA3937_RS00570 at 136.830 kb on + strand, within DDA3937_RS00570 at 136.831 kb on - strand, within DDA3937_RS00570 at 136.849 kb on - strand, within DDA3937_RS00570 at 136.849 kb on - strand, within DDA3937_RS00570 at 136.849 kb on - strand, within DDA3937_RS00570 at 136.853 kb on + strand, within DDA3937_RS00570 at 136.914 kb on + strand, within DDA3937_RS00570 at 136.915 kb on - strand, within DDA3937_RS00570 at 136.915 kb on - strand, within DDA3937_RS00570 at 136.915 kb on - strand, within DDA3937_RS00570 at 136.940 kb on + strand, within DDA3937_RS00570 at 136.941 kb on - strand, within DDA3937_RS00570 at 136.941 kb on - strand, within DDA3937_RS00570 at 137.044 kb on + strand at 137.044 kb on + strand at 137.044 kb on + strand at 137.045 kb on - strand at 137.045 kb on - strand at 137.045 kb on - strand at 137.045 kb on - strand at 137.046 kb on + strand at 137.046 kb on + strand at 137.046 kb on + strand at 137.046 kb on + strand at 137.046 kb on + strand at 137.046 kb on + strand at 137.046 kb on + strand at 137.046 kb on + strand at 137.046 kb on + strand at 137.047 kb on - strand at 137.047 kb on - strand at 137.047 kb on - strand at 137.047 kb on - strand at 137.097 kb on + strand, within DDA3937_RS21740 at 137.107 kb on + strand, within DDA3937_RS21740 at 137.107 kb on + strand, within DDA3937_RS21740 at 137.107 kb on + strand, within DDA3937_RS21740 at 137.108 kb on - strand, within DDA3937_RS21740 at 137.108 kb on - strand, within DDA3937_RS21740 at 137.110 kb on + strand, within DDA3937_RS21740 at 137.110 kb on + strand, within DDA3937_RS21740 at 137.111 kb on - strand, within DDA3937_RS21740 at 137.111 kb on - strand, within DDA3937_RS21740 at 137.111 kb on - strand, within DDA3937_RS21740 at 137.112 kb on + strand, within DDA3937_RS21740 at 137.112 kb on + strand, within DDA3937_RS21740 at 137.112 kb on + strand, within DDA3937_RS21740 at 137.113 kb on - strand, within DDA3937_RS21740 at 137.113 kb on - strand, within DDA3937_RS21740 at 137.113 kb on - strand, within DDA3937_RS21740 at 137.181 kb on + strand, within DDA3937_RS21740 at 137.181 kb on + strand, within DDA3937_RS21740 at 137.182 kb on - strand, within DDA3937_RS21740 at 137.188 kb on + strand, within DDA3937_RS21740 at 137.189 kb on - strand, within DDA3937_RS21740 at 137.189 kb on - strand, within DDA3937_RS21740 at 137.189 kb on - strand, within DDA3937_RS21740 at 137.228 kb on - strand, within DDA3937_RS21740 at 137.234 kb on + strand, within DDA3937_RS21740 at 137.234 kb on + strand, within DDA3937_RS21740 at 137.234 kb on + strand, within DDA3937_RS21740 at 137.234 kb on + strand, within DDA3937_RS21740 at 137.234 kb on + strand, within DDA3937_RS21740 at 137.235 kb on - strand, within DDA3937_RS21740 at 137.235 kb on - strand, within DDA3937_RS21740 at 137.235 kb on - strand, within DDA3937_RS21740 at 137.235 kb on - strand, within DDA3937_RS21740 at 137.235 kb on - strand, within DDA3937_RS21740 at 137.235 kb on - strand, within DDA3937_RS21740 at 137.235 kb on - strand, within DDA3937_RS21740 at 137.235 kb on - strand, within DDA3937_RS21740 at 137.235 kb on - strand, within DDA3937_RS21740 at 137.237 kb on + strand, within DDA3937_RS21740 at 137.291 kb on + strand, within DDA3937_RS21740 at 137.291 kb on + strand, within DDA3937_RS21740 at 137.314 kb on + strand, within DDA3937_RS21740 at 137.315 kb on - strand, within DDA3937_RS21740 at 137.315 kb on - strand, within DDA3937_RS21740 at 137.400 kb on + strand at 137.429 kb on + strand at 137.429 kb on + strand at 137.448 kb on + strand at 137.449 kb on - strand at 137.677 kb on + strand, within DDA3937_RS00575 at 137.880 kb on + strand at 137.899 kb on + strand at 137.900 kb on - strand at 137.900 kb on - strand at 137.911 kb on + strand at 137.912 kb on - strand at 137.912 kb on - strand at 137.978 kb on + strand at 137.978 kb on + strand at 137.979 kb on - strand at 138.046 kb on + strand at 138.046 kb on + strand at 138.047 kb on - strand at 138.047 kb on - strand at 138.047 kb on - strand at 138.047 kb on - strand at 138.047 kb on - strand at 138.047 kb on - strand at 138.048 kb on + strand at 138.110 kb on - strand at 138.145 kb on + strand at 138.146 kb on - strand at 138.146 kb on - strand at 138.162 kb on + strand at 138.162 kb on + strand at 138.162 kb on + strand at 138.162 kb on + strand at 138.162 kb on + strand at 138.162 kb on + strand at 138.162 kb on + strand at 138.162 kb on + strand at 138.163 kb on - strand at 138.163 kb on - strand at 138.163 kb on - strand at 138.163 kb on - strand at 138.163 kb on - strand at 138.163 kb on - strand at 138.167 kb on + strand at 138.167 kb on + strand at 138.168 kb on - strand at 138.168 kb on - strand at 138.194 kb on - strand at 138.198 kb on + strand at 138.199 kb on - strand at 138.230 kb on + strand at 138.232 kb on + strand at 138.233 kb on - strand at 138.233 kb on - strand at 138.233 kb on - strand at 138.233 kb on - strand at 138.362 kb on + strand, within DDA3937_RS00580 at 138.394 kb on - strand, within DDA3937_RS00580 at 138.394 kb on - strand, within DDA3937_RS00580 at 138.443 kb on - strand, within DDA3937_RS00580 at 138.459 kb on + strand, within DDA3937_RS00580 at 138.460 kb on - strand, within DDA3937_RS00580 at 138.564 kb on + strand, within DDA3937_RS00580 at 138.564 kb on + strand, within DDA3937_RS00580 at 138.565 kb on - strand, within DDA3937_RS00580 at 138.612 kb on + strand, within DDA3937_RS00580 at 138.613 kb on - strand, within DDA3937_RS00580 at 138.620 kb on + strand, within DDA3937_RS00580 at 138.621 kb on - strand, within DDA3937_RS00580 at 138.666 kb on - strand, within DDA3937_RS00580 at 138.666 kb on - strand, within DDA3937_RS00580 at 138.669 kb on + strand, within DDA3937_RS00580 at 138.669 kb on + strand, within DDA3937_RS00580 at 138.669 kb on + strand, within DDA3937_RS00580 at 138.670 kb on - strand, within DDA3937_RS00580 at 138.670 kb on - strand, within DDA3937_RS00580 at 138.776 kb on + strand, within DDA3937_RS00580 at 138.777 kb on - strand, within DDA3937_RS00580 at 138.777 kb on - strand, within DDA3937_RS00580 at 138.777 kb on - strand, within DDA3937_RS00580 at 138.777 kb on - strand, within DDA3937_RS00580 at 138.777 kb on - strand, within DDA3937_RS00580 at 138.777 kb on - strand, within DDA3937_RS00580 at 138.777 kb on - strand, within DDA3937_RS00580 at 138.782 kb on + strand, within DDA3937_RS00580 at 138.783 kb on - strand, within DDA3937_RS00580 at 138.783 kb on - strand, within DDA3937_RS00580 at 138.869 kb on + strand, within DDA3937_RS00580 at 138.869 kb on + strand, within DDA3937_RS00580 at 138.870 kb on - strand, within DDA3937_RS00580 at 138.870 kb on - strand, within DDA3937_RS00580 at 138.908 kb on + strand, within DDA3937_RS00580 at 138.908 kb on + strand, within DDA3937_RS00580 at 138.908 kb on + strand, within DDA3937_RS00580 at 138.908 kb on + strand at 138.909 kb on - strand, within DDA3937_RS00580 at 138.909 kb on - strand, within DDA3937_RS00580
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 136,464 + DDA3937_RS00565 0.72 -1.6 136,486 + DDA3937_RS00565 0.74 +0.8 136,498 + DDA3937_RS00565 0.76 -1.0 136,568 + DDA3937_RS00565 0.82 -0.0 136,583 + DDA3937_RS00565 0.84 +0.2 136,615 + DDA3937_RS00565 0.87 -2.0 136,615 + DDA3937_RS00565 0.87 +0.3 136,615 + DDA3937_RS00565 0.87 -0.3 136,617 + DDA3937_RS00565 0.87 +0.8 136,617 + DDA3937_RS00565 0.87 -0.9 136,617 + DDA3937_RS00565 0.87 +0.5 136,626 + DDA3937_RS00565 0.88 -0.6 136,626 + DDA3937_RS00565 0.88 -2.2 136,626 + DDA3937_RS00565 0.88 -1.5 136,626 + DDA3937_RS00565 0.88 -0.2 136,626 + DDA3937_RS00565 0.88 -1.2 136,626 + DDA3937_RS00565 0.88 -1.7 136,739 + -0.7 136,750 + +0.2 136,750 + -0.4 136,781 + -0.7 136,781 + -1.6 136,782 - -0.2 136,785 - -0.8 136,785 - -0.5 136,785 - -0.9 136,785 - -1.2 136,819 + DDA3937_RS00570 0.19 -1.6 136,819 + DDA3937_RS00570 0.19 +1.3 136,820 - DDA3937_RS00570 0.20 -0.5 136,820 - DDA3937_RS00570 0.20 +0.3 136,820 - DDA3937_RS00570 0.20 -0.2 136,820 - DDA3937_RS00570 0.20 -0.3 136,830 + DDA3937_RS00570 0.23 +1.1 136,831 - DDA3937_RS00570 0.24 -0.6 136,849 - DDA3937_RS00570 0.30 -0.1 136,849 - DDA3937_RS00570 0.30 -0.8 136,849 - DDA3937_RS00570 0.30 +0.7 136,853 + DDA3937_RS00570 0.32 -0.3 136,914 + DDA3937_RS00570 0.54 +1.4 136,915 - DDA3937_RS00570 0.55 +1.1 136,915 - DDA3937_RS00570 0.55 -1.4 136,915 - DDA3937_RS00570 0.55 +1.9 136,940 + DDA3937_RS00570 0.64 +0.9 136,941 - DDA3937_RS00570 0.64 -1.6 136,941 - DDA3937_RS00570 0.64 -0.8 137,044 + +2.3 137,044 + -0.8 137,044 + -0.5 137,045 - -0.4 137,045 - +0.4 137,045 - -0.9 137,045 - -0.1 137,046 + +1.3 137,046 + +1.8 137,046 + +0.2 137,046 + -0.6 137,046 + +0.9 137,046 + -0.0 137,046 + -0.8 137,046 + +0.8 137,046 + -1.4 137,047 - -1.0 137,047 - -0.9 137,047 - -0.0 137,047 - -0.7 137,097 + DDA3937_RS21740 0.22 -1.9 137,107 + DDA3937_RS21740 0.25 -1.5 137,107 + DDA3937_RS21740 0.25 -0.0 137,107 + DDA3937_RS21740 0.25 -0.6 137,108 - DDA3937_RS21740 0.26 -0.7 137,108 - DDA3937_RS21740 0.26 -0.8 137,110 + DDA3937_RS21740 0.26 +0.1 137,110 + DDA3937_RS21740 0.26 -2.3 137,111 - DDA3937_RS21740 0.27 -1.2 137,111 - DDA3937_RS21740 0.27 +0.0 137,111 - DDA3937_RS21740 0.27 -0.5 137,112 + DDA3937_RS21740 0.27 -0.5 137,112 + DDA3937_RS21740 0.27 +2.3 137,112 + DDA3937_RS21740 0.27 -0.8 137,113 - DDA3937_RS21740 0.27 +0.3 137,113 - DDA3937_RS21740 0.27 +0.0 137,113 - DDA3937_RS21740 0.27 -1.8 137,181 + DDA3937_RS21740 0.47 +1.5 137,181 + DDA3937_RS21740 0.47 -1.0 137,182 - DDA3937_RS21740 0.47 -0.6 137,188 + DDA3937_RS21740 0.49 +0.8 137,189 - DDA3937_RS21740 0.50 +0.2 137,189 - DDA3937_RS21740 0.50 +0.8 137,189 - DDA3937_RS21740 0.50 -1.1 137,228 - DDA3937_RS21740 0.61 +2.6 137,234 + DDA3937_RS21740 0.63 -1.3 137,234 + DDA3937_RS21740 0.63 -1.4 137,234 + DDA3937_RS21740 0.63 +0.8 137,234 + DDA3937_RS21740 0.63 -1.2 137,234 + DDA3937_RS21740 0.63 -1.2 137,235 - DDA3937_RS21740 0.63 +2.5 137,235 - DDA3937_RS21740 0.63 -2.2 137,235 - DDA3937_RS21740 0.63 +0.0 137,235 - DDA3937_RS21740 0.63 -1.8 137,235 - DDA3937_RS21740 0.63 -1.5 137,235 - DDA3937_RS21740 0.63 +0.6 137,235 - DDA3937_RS21740 0.63 -1.8 137,235 - DDA3937_RS21740 0.63 -0.8 137,235 - DDA3937_RS21740 0.63 +1.2 137,237 + DDA3937_RS21740 0.64 +0.1 137,291 + DDA3937_RS21740 0.80 -0.7 137,291 + DDA3937_RS21740 0.80 +0.5 137,314 + DDA3937_RS21740 0.86 -0.8 137,315 - DDA3937_RS21740 0.87 -0.1 137,315 - DDA3937_RS21740 0.87 -0.1 137,400 + -0.8 137,429 + +1.2 137,429 + +1.4 137,448 + +0.0 137,449 - +0.8 137,677 + DDA3937_RS00575 0.50 -1.0 137,880 + -0.2 137,899 + -0.9 137,900 - +1.0 137,900 - -0.4 137,911 + -2.9 137,912 - +0.1 137,912 - +0.2 137,978 + -0.7 137,978 + -0.6 137,979 - +0.4 138,046 + -0.6 138,046 + +0.8 138,047 - -1.2 138,047 - +0.2 138,047 - +0.9 138,047 - -0.5 138,047 - -1.0 138,047 - -0.5 138,048 + +0.2 138,110 - +0.5 138,145 + -0.0 138,146 - +2.8 138,146 - -1.2 138,162 + +2.9 138,162 + -0.1 138,162 + +0.0 138,162 + +1.3 138,162 + -0.4 138,162 + +0.7 138,162 + -0.4 138,162 + +0.1 138,163 - -1.0 138,163 - +0.2 138,163 - +1.3 138,163 - +0.3 138,163 - -1.7 138,163 - -0.4 138,167 + +0.0 138,167 + -1.3 138,168 - -0.3 138,168 - +0.1 138,194 - -1.0 138,198 + -0.0 138,199 - -0.9 138,230 + -0.2 138,232 + +0.2 138,233 - -0.2 138,233 - -0.2 138,233 - -0.5 138,233 - +0.1 138,362 + DDA3937_RS00580 0.13 -1.6 138,394 - DDA3937_RS00580 0.16 -2.6 138,394 - DDA3937_RS00580 0.16 -0.5 138,443 - DDA3937_RS00580 0.22 -1.7 138,459 + DDA3937_RS00580 0.23 -1.6 138,460 - DDA3937_RS00580 0.23 -1.8 138,564 + DDA3937_RS00580 0.35 -0.4 138,564 + DDA3937_RS00580 0.35 -0.3 138,565 - DDA3937_RS00580 0.35 -1.5 138,612 + DDA3937_RS00580 0.40 -0.6 138,613 - DDA3937_RS00580 0.40 -3.1 138,620 + DDA3937_RS00580 0.41 -1.2 138,621 - DDA3937_RS00580 0.41 -1.5 138,666 - DDA3937_RS00580 0.46 -2.0 138,666 - DDA3937_RS00580 0.46 +0.5 138,669 + DDA3937_RS00580 0.46 -1.7 138,669 + DDA3937_RS00580 0.46 -2.0 138,669 + DDA3937_RS00580 0.46 -1.7 138,670 - DDA3937_RS00580 0.46 -1.3 138,670 - DDA3937_RS00580 0.46 -1.2 138,776 + DDA3937_RS00580 0.57 +1.2 138,777 - DDA3937_RS00580 0.57 -2.6 138,777 - DDA3937_RS00580 0.57 -2.7 138,777 - DDA3937_RS00580 0.57 -2.4 138,777 - DDA3937_RS00580 0.57 -0.6 138,777 - DDA3937_RS00580 0.57 -0.8 138,777 - DDA3937_RS00580 0.57 -1.4 138,777 - DDA3937_RS00580 0.57 +0.5 138,782 + DDA3937_RS00580 0.58 -3.0 138,783 - DDA3937_RS00580 0.58 -0.8 138,783 - DDA3937_RS00580 0.58 -3.6 138,869 + DDA3937_RS00580 0.67 -2.5 138,869 + DDA3937_RS00580 0.67 -3.0 138,870 - DDA3937_RS00580 0.67 -1.8 138,870 - DDA3937_RS00580 0.67 -0.2 138,908 + DDA3937_RS00580 0.71 -1.0 138,908 + DDA3937_RS00580 0.71 -1.2 138,908 + DDA3937_RS00580 0.71 -0.2 138,908 + +1.3 138,909 - DDA3937_RS00580 0.72 -2.0 138,909 - DDA3937_RS00580 0.72 +1.0
Or see this region's nucleotide sequence