Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00555 and DDA3937_RS00560 are separated by 276 nucleotides DDA3937_RS00560 and DDA3937_RS00565 are separated by 228 nucleotides
DDA3937_RS00555: DDA3937_RS00555 - dicarboxylate/amino acid:cation symporter, at 132,468 to 133,754
_RS00555
DDA3937_RS00560: DDA3937_RS00560 - insulinase family protein, at 134,031 to 135,494
_RS00560
DDA3937_RS00565: DDA3937_RS00565 - virulence RhuM family protein, at 135,723 to 136,748
_RS00565
Position (kb) 134
135
136 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 133.098 kb on + strand, within DDA3937_RS00555 at 133.098 kb on + strand, within DDA3937_RS00555 at 133.098 kb on + strand, within DDA3937_RS00555 at 133.099 kb on - strand, within DDA3937_RS00555 at 133.099 kb on - strand, within DDA3937_RS00555 at 133.136 kb on + strand, within DDA3937_RS00555 at 133.146 kb on + strand, within DDA3937_RS00555 at 133.146 kb on + strand, within DDA3937_RS00555 at 133.147 kb on - strand, within DDA3937_RS00555 at 133.147 kb on - strand, within DDA3937_RS00555 at 133.147 kb on - strand at 133.147 kb on - strand, within DDA3937_RS00555 at 133.147 kb on - strand, within DDA3937_RS00555 at 133.147 kb on - strand, within DDA3937_RS00555 at 133.231 kb on - strand, within DDA3937_RS00555 at 133.231 kb on - strand, within DDA3937_RS00555 at 133.256 kb on - strand, within DDA3937_RS00555 at 133.292 kb on + strand, within DDA3937_RS00555 at 133.292 kb on + strand at 133.293 kb on - strand, within DDA3937_RS00555 at 133.322 kb on + strand, within DDA3937_RS00555 at 133.323 kb on - strand, within DDA3937_RS00555 at 133.389 kb on + strand, within DDA3937_RS00555 at 133.389 kb on + strand, within DDA3937_RS00555 at 133.550 kb on - strand, within DDA3937_RS00555 at 133.655 kb on - strand at 133.673 kb on + strand at 133.673 kb on + strand at 133.673 kb on + strand at 133.674 kb on - strand at 133.674 kb on - strand at 133.719 kb on - strand at 133.756 kb on - strand at 133.771 kb on - strand at 133.813 kb on + strand at 133.834 kb on + strand at 133.834 kb on + strand at 133.859 kb on + strand at 133.867 kb on - strand at 133.889 kb on - strand at 133.889 kb on - strand at 133.889 kb on - strand at 133.907 kb on + strand at 133.918 kb on + strand at 133.918 kb on + strand at 133.918 kb on + strand at 133.919 kb on - strand at 133.919 kb on - strand at 133.996 kb on + strand at 133.996 kb on + strand at 133.996 kb on + strand at 133.997 kb on - strand at 133.997 kb on - strand at 134.001 kb on + strand at 134.001 kb on + strand at 134.002 kb on - strand at 134.002 kb on - strand at 134.002 kb on - strand at 134.002 kb on - strand at 134.015 kb on + strand at 134.016 kb on - strand at 134.021 kb on - strand at 134.110 kb on + strand at 134.110 kb on + strand at 134.111 kb on - strand at 134.111 kb on - strand at 134.111 kb on - strand at 134.111 kb on - strand at 134.206 kb on + strand, within DDA3937_RS00560 at 134.207 kb on - strand, within DDA3937_RS00560 at 134.207 kb on - strand, within DDA3937_RS00560 at 134.207 kb on - strand at 134.219 kb on + strand, within DDA3937_RS00560 at 134.219 kb on + strand, within DDA3937_RS00560 at 134.219 kb on + strand, within DDA3937_RS00560 at 134.219 kb on + strand, within DDA3937_RS00560 at 134.220 kb on - strand, within DDA3937_RS00560 at 134.220 kb on - strand, within DDA3937_RS00560 at 134.220 kb on - strand, within DDA3937_RS00560 at 134.220 kb on - strand, within DDA3937_RS00560 at 134.220 kb on - strand, within DDA3937_RS00560 at 134.270 kb on + strand, within DDA3937_RS00560 at 134.271 kb on - strand, within DDA3937_RS00560 at 134.382 kb on + strand, within DDA3937_RS00560 at 134.382 kb on + strand, within DDA3937_RS00560 at 134.382 kb on + strand, within DDA3937_RS00560 at 134.383 kb on - strand, within DDA3937_RS00560 at 134.383 kb on - strand, within DDA3937_RS00560 at 134.383 kb on - strand, within DDA3937_RS00560 at 134.383 kb on - strand, within DDA3937_RS00560 at 134.383 kb on - strand, within DDA3937_RS00560 at 134.390 kb on + strand, within DDA3937_RS00560 at 134.391 kb on - strand, within DDA3937_RS00560 at 134.391 kb on - strand, within DDA3937_RS00560 at 134.397 kb on + strand, within DDA3937_RS00560 at 134.397 kb on + strand, within DDA3937_RS00560 at 134.397 kb on + strand, within DDA3937_RS00560 at 134.397 kb on + strand, within DDA3937_RS00560 at 134.417 kb on + strand, within DDA3937_RS00560 at 134.483 kb on + strand, within DDA3937_RS00560 at 134.483 kb on + strand, within DDA3937_RS00560 at 134.484 kb on - strand, within DDA3937_RS00560 at 134.599 kb on - strand, within DDA3937_RS00560 at 134.645 kb on - strand at 134.645 kb on - strand, within DDA3937_RS00560 at 134.652 kb on + strand, within DDA3937_RS00560 at 134.653 kb on - strand, within DDA3937_RS00560 at 134.655 kb on + strand, within DDA3937_RS00560 at 134.655 kb on + strand, within DDA3937_RS00560 at 134.655 kb on + strand, within DDA3937_RS00560 at 134.667 kb on + strand, within DDA3937_RS00560 at 134.691 kb on + strand, within DDA3937_RS00560 at 134.691 kb on + strand, within DDA3937_RS00560 at 134.691 kb on + strand, within DDA3937_RS00560 at 134.691 kb on + strand, within DDA3937_RS00560 at 134.691 kb on + strand, within DDA3937_RS00560 at 134.691 kb on + strand, within DDA3937_RS00560 at 134.691 kb on + strand, within DDA3937_RS00560 at 134.691 kb on + strand, within DDA3937_RS00560 at 134.692 kb on - strand, within DDA3937_RS00560 at 134.692 kb on - strand, within DDA3937_RS00560 at 134.955 kb on - strand, within DDA3937_RS00560 at 135.021 kb on + strand, within DDA3937_RS00560 at 135.022 kb on - strand, within DDA3937_RS00560 at 135.204 kb on + strand, within DDA3937_RS00560 at 135.204 kb on + strand, within DDA3937_RS00560 at 135.204 kb on + strand, within DDA3937_RS00560 at 135.205 kb on - strand, within DDA3937_RS00560 at 135.205 kb on - strand, within DDA3937_RS00560 at 135.309 kb on + strand, within DDA3937_RS00560 at 135.309 kb on + strand, within DDA3937_RS00560 at 135.309 kb on + strand, within DDA3937_RS00560 at 135.389 kb on - strand at 135.389 kb on - strand at 135.417 kb on - strand at 135.417 kb on - strand at 135.438 kb on + strand at 135.438 kb on + strand at 135.439 kb on - strand at 135.439 kb on - strand at 135.439 kb on - strand at 135.439 kb on - strand at 135.439 kb on - strand at 135.492 kb on + strand at 135.492 kb on + strand at 135.492 kb on + strand at 135.492 kb on + strand at 135.493 kb on - strand at 135.493 kb on - strand at 135.493 kb on - strand at 135.496 kb on + strand at 135.496 kb on + strand at 135.496 kb on + strand at 135.496 kb on + strand at 135.496 kb on + strand at 135.496 kb on + strand at 135.496 kb on + strand at 135.497 kb on - strand at 135.497 kb on - strand at 135.497 kb on - strand at 135.497 kb on - strand at 135.497 kb on - strand at 135.515 kb on - strand at 135.556 kb on + strand at 135.556 kb on + strand at 135.557 kb on - strand at 135.557 kb on - strand at 135.557 kb on - strand at 135.562 kb on + strand at 135.563 kb on - strand at 135.573 kb on + strand at 135.573 kb on + strand at 135.574 kb on - strand at 135.608 kb on - strand at 135.622 kb on + strand at 135.622 kb on + strand at 135.622 kb on + strand at 135.623 kb on - strand at 135.623 kb on - strand at 135.643 kb on + strand at 135.655 kb on + strand at 135.716 kb on + strand at 135.724 kb on + strand at 135.725 kb on - strand at 135.737 kb on + strand at 135.737 kb on + strand at 135.738 kb on - strand at 135.738 kb on - strand at 135.741 kb on + strand at 135.742 kb on - strand at 135.759 kb on + strand at 135.759 kb on + strand at 135.759 kb on + strand at 135.760 kb on - strand at 135.760 kb on - strand at 135.760 kb on - strand at 135.760 kb on - strand at 135.760 kb on - strand at 135.760 kb on - strand at 135.760 kb on - strand at 135.760 kb on - strand at 135.894 kb on - strand, within DDA3937_RS00565 at 135.939 kb on + strand, within DDA3937_RS00565 at 135.939 kb on + strand, within DDA3937_RS00565 at 135.940 kb on - strand, within DDA3937_RS00565 at 135.940 kb on - strand, within DDA3937_RS00565 at 135.940 kb on - strand, within DDA3937_RS00565 at 135.986 kb on + strand, within DDA3937_RS00565 at 135.986 kb on + strand, within DDA3937_RS00565 at 135.987 kb on - strand, within DDA3937_RS00565 at 135.987 kb on - strand, within DDA3937_RS00565 at 136.031 kb on - strand, within DDA3937_RS00565 at 136.031 kb on - strand, within DDA3937_RS00565 at 136.031 kb on - strand, within DDA3937_RS00565 at 136.062 kb on + strand, within DDA3937_RS00565 at 136.062 kb on + strand, within DDA3937_RS00565 at 136.062 kb on + strand, within DDA3937_RS00565 at 136.062 kb on + strand, within DDA3937_RS00565 at 136.062 kb on + strand, within DDA3937_RS00565 at 136.063 kb on - strand, within DDA3937_RS00565 at 136.063 kb on - strand, within DDA3937_RS00565 at 136.063 kb on - strand, within DDA3937_RS00565 at 136.077 kb on - strand, within DDA3937_RS00565 at 136.078 kb on + strand, within DDA3937_RS00565 at 136.078 kb on + strand, within DDA3937_RS00565 at 136.078 kb on + strand, within DDA3937_RS00565 at 136.078 kb on + strand, within DDA3937_RS00565 at 136.078 kb on + strand, within DDA3937_RS00565 at 136.078 kb on + strand, within DDA3937_RS00565 at 136.078 kb on + strand, within DDA3937_RS00565 at 136.078 kb on + strand, within DDA3937_RS00565 at 136.078 kb on + strand, within DDA3937_RS00565 at 136.079 kb on - strand, within DDA3937_RS00565 at 136.145 kb on + strand, within DDA3937_RS00565 at 136.159 kb on + strand, within DDA3937_RS00565 at 136.159 kb on + strand, within DDA3937_RS00565 at 136.160 kb on - strand, within DDA3937_RS00565 at 136.235 kb on + strand, within DDA3937_RS00565 at 136.258 kb on + strand, within DDA3937_RS00565 at 136.398 kb on + strand, within DDA3937_RS00565 at 136.398 kb on + strand, within DDA3937_RS00565 at 136.464 kb on + strand, within DDA3937_RS00565 at 136.486 kb on + strand, within DDA3937_RS00565
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 133,098 + DDA3937_RS00555 0.49 -0.8 133,098 + DDA3937_RS00555 0.49 -1.4 133,098 + DDA3937_RS00555 0.49 -0.3 133,099 - DDA3937_RS00555 0.49 +0.7 133,099 - DDA3937_RS00555 0.49 -0.6 133,136 + DDA3937_RS00555 0.52 +0.3 133,146 + DDA3937_RS00555 0.53 -2.2 133,146 + DDA3937_RS00555 0.53 -1.9 133,147 - DDA3937_RS00555 0.53 -2.9 133,147 - DDA3937_RS00555 0.53 -1.5 133,147 - +0.8 133,147 - DDA3937_RS00555 0.53 -1.7 133,147 - DDA3937_RS00555 0.53 +4.4 133,147 - DDA3937_RS00555 0.53 -2.5 133,231 - DDA3937_RS00555 0.59 +0.7 133,231 - DDA3937_RS00555 0.59 -0.2 133,256 - DDA3937_RS00555 0.61 -2.8 133,292 + DDA3937_RS00555 0.64 -0.0 133,292 + +0.4 133,293 - DDA3937_RS00555 0.64 -0.3 133,322 + DDA3937_RS00555 0.66 -0.9 133,323 - DDA3937_RS00555 0.66 -0.3 133,389 + DDA3937_RS00555 0.72 +0.0 133,389 + DDA3937_RS00555 0.72 -2.2 133,550 - DDA3937_RS00555 0.84 -1.8 133,655 - -1.6 133,673 + -1.7 133,673 + +1.1 133,673 + +0.5 133,674 - -0.2 133,674 - +0.6 133,719 - -0.2 133,756 - -1.4 133,771 - +5.0 133,813 + +0.9 133,834 + +1.6 133,834 + -0.2 133,859 + +0.9 133,867 - +1.0 133,889 - -1.0 133,889 - -1.0 133,889 - -0.2 133,907 + +1.2 133,918 + +1.4 133,918 + +1.2 133,918 + +1.0 133,919 - -1.4 133,919 - -3.1 133,996 + +1.6 133,996 + +0.4 133,996 + +0.3 133,997 - -1.2 133,997 - -2.1 134,001 + +1.0 134,001 + -1.8 134,002 - -0.0 134,002 - -1.8 134,002 - -3.3 134,002 - -3.8 134,015 + -0.7 134,016 - -0.2 134,021 - -2.4 134,110 + -1.0 134,110 + -1.2 134,111 - -0.0 134,111 - -3.0 134,111 - -3.0 134,111 - -1.0 134,206 + DDA3937_RS00560 0.12 -1.9 134,207 - DDA3937_RS00560 0.12 -1.9 134,207 - DDA3937_RS00560 0.12 -1.9 134,207 - +0.8 134,219 + DDA3937_RS00560 0.13 +0.8 134,219 + DDA3937_RS00560 0.13 -1.6 134,219 + DDA3937_RS00560 0.13 -2.8 134,219 + DDA3937_RS00560 0.13 -1.7 134,220 - DDA3937_RS00560 0.13 -2.3 134,220 - DDA3937_RS00560 0.13 -0.1 134,220 - DDA3937_RS00560 0.13 -0.6 134,220 - DDA3937_RS00560 0.13 -0.6 134,220 - DDA3937_RS00560 0.13 +0.2 134,270 + DDA3937_RS00560 0.16 +1.2 134,271 - DDA3937_RS00560 0.16 -0.2 134,382 + DDA3937_RS00560 0.24 +0.2 134,382 + DDA3937_RS00560 0.24 -2.1 134,382 + DDA3937_RS00560 0.24 -2.8 134,383 - DDA3937_RS00560 0.24 -2.0 134,383 - DDA3937_RS00560 0.24 -2.5 134,383 - DDA3937_RS00560 0.24 -0.9 134,383 - DDA3937_RS00560 0.24 -1.4 134,383 - DDA3937_RS00560 0.24 -1.0 134,390 + DDA3937_RS00560 0.25 -2.4 134,391 - DDA3937_RS00560 0.25 -1.0 134,391 - DDA3937_RS00560 0.25 -0.7 134,397 + DDA3937_RS00560 0.25 -0.8 134,397 + DDA3937_RS00560 0.25 -0.6 134,397 + DDA3937_RS00560 0.25 -3.0 134,397 + DDA3937_RS00560 0.25 -1.1 134,417 + DDA3937_RS00560 0.26 -1.8 134,483 + DDA3937_RS00560 0.31 -2.6 134,483 + DDA3937_RS00560 0.31 -0.6 134,484 - DDA3937_RS00560 0.31 -2.7 134,599 - DDA3937_RS00560 0.39 +0.5 134,645 - +0.2 134,645 - DDA3937_RS00560 0.42 -1.2 134,652 + DDA3937_RS00560 0.42 -2.6 134,653 - DDA3937_RS00560 0.42 -2.0 134,655 + DDA3937_RS00560 0.43 -2.0 134,655 + DDA3937_RS00560 0.43 -1.9 134,655 + DDA3937_RS00560 0.43 -1.0 134,667 + DDA3937_RS00560 0.43 +0.6 134,691 + DDA3937_RS00560 0.45 -4.5 134,691 + DDA3937_RS00560 0.45 -0.6 134,691 + DDA3937_RS00560 0.45 -0.6 134,691 + DDA3937_RS00560 0.45 -0.2 134,691 + DDA3937_RS00560 0.45 -3.1 134,691 + DDA3937_RS00560 0.45 +0.0 134,691 + DDA3937_RS00560 0.45 -2.4 134,691 + DDA3937_RS00560 0.45 -1.4 134,692 - DDA3937_RS00560 0.45 -0.6 134,692 - DDA3937_RS00560 0.45 +1.1 134,955 - DDA3937_RS00560 0.63 -0.2 135,021 + DDA3937_RS00560 0.68 +0.3 135,022 - DDA3937_RS00560 0.68 -0.5 135,204 + DDA3937_RS00560 0.80 -0.8 135,204 + DDA3937_RS00560 0.80 -0.9 135,204 + DDA3937_RS00560 0.80 -0.6 135,205 - DDA3937_RS00560 0.80 -1.8 135,205 - DDA3937_RS00560 0.80 -2.2 135,309 + DDA3937_RS00560 0.87 +0.2 135,309 + DDA3937_RS00560 0.87 -1.2 135,309 + DDA3937_RS00560 0.87 -0.6 135,389 - -1.3 135,389 - +0.4 135,417 - -2.4 135,417 - +0.8 135,438 + -0.8 135,438 + +1.8 135,439 - -1.8 135,439 - -0.6 135,439 - -1.7 135,439 - -2.6 135,439 - -1.6 135,492 + -1.1 135,492 + -2.8 135,492 + -1.6 135,492 + +0.2 135,493 - -1.2 135,493 - -0.8 135,493 - -0.1 135,496 + +0.6 135,496 + -2.8 135,496 + -2.0 135,496 + -1.6 135,496 + -0.2 135,496 + -1.4 135,496 + +0.0 135,497 - +0.0 135,497 - -1.3 135,497 - -0.3 135,497 - -3.0 135,497 - -2.6 135,515 - -1.6 135,556 + +0.9 135,556 + -0.5 135,557 - -0.2 135,557 - -0.2 135,557 - -1.5 135,562 + -1.5 135,563 - -0.8 135,573 + -1.6 135,573 + -0.0 135,574 - +1.8 135,608 - +1.9 135,622 + -1.2 135,622 + -0.5 135,622 + -0.8 135,623 - -0.3 135,623 - -0.1 135,643 + -1.4 135,655 + -0.2 135,716 + -1.0 135,724 + +0.1 135,725 - -0.6 135,737 + -0.2 135,737 + +0.0 135,738 - +1.3 135,738 - -2.2 135,741 + +0.2 135,742 - -0.2 135,759 + -1.6 135,759 + -1.0 135,759 + +0.5 135,760 - -0.9 135,760 - +0.2 135,760 - -1.0 135,760 - -1.8 135,760 - +0.2 135,760 - -0.7 135,760 - +1.5 135,760 - +0.8 135,894 - DDA3937_RS00565 0.17 +0.5 135,939 + DDA3937_RS00565 0.21 -1.5 135,939 + DDA3937_RS00565 0.21 -2.7 135,940 - DDA3937_RS00565 0.21 +1.5 135,940 - DDA3937_RS00565 0.21 -0.2 135,940 - DDA3937_RS00565 0.21 +0.8 135,986 + DDA3937_RS00565 0.26 +0.6 135,986 + DDA3937_RS00565 0.26 +0.2 135,987 - DDA3937_RS00565 0.26 +0.2 135,987 - DDA3937_RS00565 0.26 -0.8 136,031 - DDA3937_RS00565 0.30 +0.6 136,031 - DDA3937_RS00565 0.30 +0.6 136,031 - DDA3937_RS00565 0.30 +1.0 136,062 + DDA3937_RS00565 0.33 +0.2 136,062 + DDA3937_RS00565 0.33 +0.8 136,062 + DDA3937_RS00565 0.33 -1.0 136,062 + DDA3937_RS00565 0.33 -0.8 136,062 + DDA3937_RS00565 0.33 +0.3 136,063 - DDA3937_RS00565 0.33 +2.7 136,063 - DDA3937_RS00565 0.33 -1.1 136,063 - DDA3937_RS00565 0.33 +0.8 136,077 - DDA3937_RS00565 0.35 -0.4 136,078 + DDA3937_RS00565 0.35 +0.4 136,078 + DDA3937_RS00565 0.35 -0.3 136,078 + DDA3937_RS00565 0.35 -0.3 136,078 + DDA3937_RS00565 0.35 -0.2 136,078 + DDA3937_RS00565 0.35 +0.5 136,078 + DDA3937_RS00565 0.35 +0.9 136,078 + DDA3937_RS00565 0.35 +0.2 136,078 + DDA3937_RS00565 0.35 -1.8 136,078 + DDA3937_RS00565 0.35 -1.6 136,079 - DDA3937_RS00565 0.35 -0.7 136,145 + DDA3937_RS00565 0.41 +0.3 136,159 + DDA3937_RS00565 0.42 -0.2 136,159 + DDA3937_RS00565 0.42 -2.0 136,160 - DDA3937_RS00565 0.43 -2.2 136,235 + DDA3937_RS00565 0.50 -1.1 136,258 + DDA3937_RS00565 0.52 -0.8 136,398 + DDA3937_RS00565 0.66 -0.6 136,398 + DDA3937_RS00565 0.66 -0.4 136,464 + DDA3937_RS00565 0.72 -1.6 136,486 + DDA3937_RS00565 0.74 +0.8
Or see this region's nucleotide sequence