Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00465 and DDA3937_RS00470 are separated by 12 nucleotides DDA3937_RS00470 and DDA3937_RS00475 are separated by 28 nucleotides DDA3937_RS00475 and DDA3937_RS00480 overlap by 4 nucleotides
DDA3937_RS00465: DDA3937_RS00465 - dipeptide ABC transporter permease DppB, at 110,917 to 111,936
_RS00465
DDA3937_RS00470: DDA3937_RS00470 - dipeptide ABC transporter permease DppC, at 111,949 to 112,851
_RS00470
DDA3937_RS00475: DDA3937_RS00475 - dipeptide ABC transporter ATP-binding protein, at 112,880 to 113,860
_RS00475
DDA3937_RS00480: DDA3937_RS00480 - ABC transporter ATP-binding protein, at 113,857 to 114,864
_RS00480
Position (kb) 112
113
114 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 111.893 kb on + strand at 111.893 kb on + strand at 111.893 kb on + strand at 111.893 kb on + strand at 111.898 kb on + strand at 111.899 kb on - strand at 111.934 kb on + strand at 111.934 kb on + strand at 111.934 kb on + strand at 111.935 kb on - strand at 112.022 kb on - strand at 112.022 kb on - strand at 112.032 kb on + strand at 112.032 kb on + strand at 112.032 kb on + strand at 112.032 kb on + strand at 112.033 kb on - strand at 112.035 kb on + strand at 112.035 kb on + strand at 112.036 kb on - strand at 112.060 kb on + strand, within DDA3937_RS00470 at 112.060 kb on + strand, within DDA3937_RS00470 at 112.060 kb on + strand, within DDA3937_RS00470 at 112.060 kb on + strand, within DDA3937_RS00470 at 112.061 kb on - strand, within DDA3937_RS00470 at 112.061 kb on - strand, within DDA3937_RS00470 at 112.061 kb on - strand, within DDA3937_RS00470 at 112.147 kb on - strand, within DDA3937_RS00470 at 112.183 kb on + strand, within DDA3937_RS00470 at 112.183 kb on + strand, within DDA3937_RS00470 at 112.183 kb on + strand, within DDA3937_RS00470 at 112.183 kb on + strand, within DDA3937_RS00470 at 112.183 kb on + strand, within DDA3937_RS00470 at 112.183 kb on + strand, within DDA3937_RS00470 at 112.184 kb on - strand, within DDA3937_RS00470 at 112.184 kb on - strand, within DDA3937_RS00470 at 112.184 kb on - strand, within DDA3937_RS00470 at 112.184 kb on - strand, within DDA3937_RS00470 at 112.184 kb on - strand, within DDA3937_RS00470 at 112.234 kb on + strand, within DDA3937_RS00470 at 112.234 kb on + strand, within DDA3937_RS00470 at 112.235 kb on - strand, within DDA3937_RS00470 at 112.474 kb on + strand, within DDA3937_RS00470 at 112.474 kb on + strand, within DDA3937_RS00470 at 112.474 kb on + strand, within DDA3937_RS00470 at 112.475 kb on - strand, within DDA3937_RS00470 at 112.475 kb on - strand, within DDA3937_RS00470 at 112.475 kb on - strand, within DDA3937_RS00470 at 112.475 kb on - strand, within DDA3937_RS00470 at 112.475 kb on - strand, within DDA3937_RS00470 at 112.475 kb on - strand at 112.523 kb on - strand, within DDA3937_RS00470 at 112.523 kb on - strand, within DDA3937_RS00470 at 112.788 kb on - strand at 112.797 kb on + strand at 112.797 kb on + strand at 112.797 kb on + strand at 112.797 kb on + strand at 112.798 kb on - strand at 112.849 kb on + strand at 112.849 kb on + strand at 112.865 kb on + strand at 112.865 kb on + strand at 112.865 kb on + strand at 112.865 kb on + strand at 112.866 kb on - strand at 112.867 kb on + strand at 112.867 kb on + strand at 112.868 kb on - strand at 112.868 kb on - strand at 112.868 kb on - strand at 112.868 kb on - strand at 112.868 kb on - strand at 112.873 kb on + strand at 112.874 kb on - strand at 112.896 kb on + strand at 112.897 kb on - strand at 112.954 kb on + strand at 112.962 kb on - strand at 112.962 kb on - strand at 113.195 kb on + strand, within DDA3937_RS00475 at 113.196 kb on - strand, within DDA3937_RS00475 at 113.215 kb on + strand, within DDA3937_RS00475 at 113.561 kb on + strand, within DDA3937_RS00475 at 113.561 kb on + strand, within DDA3937_RS00475 at 113.561 kb on + strand, within DDA3937_RS00475 at 113.562 kb on - strand, within DDA3937_RS00475 at 113.562 kb on - strand, within DDA3937_RS00475 at 113.562 kb on - strand, within DDA3937_RS00475 at 113.624 kb on + strand, within DDA3937_RS00475 at 113.624 kb on + strand, within DDA3937_RS00475 at 113.624 kb on + strand, within DDA3937_RS00475 at 113.625 kb on - strand, within DDA3937_RS00475 at 113.625 kb on - strand, within DDA3937_RS00475 at 113.625 kb on - strand, within DDA3937_RS00475 at 113.625 kb on - strand, within DDA3937_RS00475 at 113.711 kb on + strand, within DDA3937_RS00475 at 113.712 kb on - strand, within DDA3937_RS00475 at 113.824 kb on + strand at 113.825 kb on - strand at 113.825 kb on - strand at 113.856 kb on + strand at 113.857 kb on - strand at 113.857 kb on - strand at 113.890 kb on + strand at 113.964 kb on - strand, within DDA3937_RS00480 at 113.964 kb on - strand, within DDA3937_RS00480 at 114.045 kb on + strand, within DDA3937_RS00480 at 114.045 kb on + strand, within DDA3937_RS00480 at 114.046 kb on - strand, within DDA3937_RS00480 at 114.097 kb on + strand, within DDA3937_RS00480 at 114.097 kb on + strand, within DDA3937_RS00480 at 114.097 kb on + strand, within DDA3937_RS00480 at 114.097 kb on + strand, within DDA3937_RS00480 at 114.098 kb on - strand, within DDA3937_RS00480 at 114.098 kb on - strand, within DDA3937_RS00480 at 114.098 kb on - strand, within DDA3937_RS00480 at 114.100 kb on + strand, within DDA3937_RS00480 at 114.101 kb on - strand, within DDA3937_RS00480 at 114.101 kb on - strand, within DDA3937_RS00480 at 114.101 kb on - strand, within DDA3937_RS00480 at 114.196 kb on - strand, within DDA3937_RS00480 at 114.196 kb on - strand at 114.322 kb on + strand, within DDA3937_RS00480 at 114.322 kb on + strand, within DDA3937_RS00480 at 114.323 kb on - strand, within DDA3937_RS00480 at 114.323 kb on - strand, within DDA3937_RS00480 at 114.366 kb on + strand, within DDA3937_RS00480 at 114.503 kb on - strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.566 kb on - strand, within DDA3937_RS00480 at 114.566 kb on - strand, within DDA3937_RS00480 at 114.566 kb on - strand, within DDA3937_RS00480 at 114.628 kb on + strand, within DDA3937_RS00480 at 114.629 kb on - strand, within DDA3937_RS00480 at 114.629 kb on - strand, within DDA3937_RS00480 at 114.857 kb on + strand at 114.857 kb on + strand at 114.857 kb on + strand at 114.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 111,893 + +0.3 111,893 + -0.4 111,893 + -0.5 111,893 + -0.0 111,898 + -0.7 111,899 - +0.6 111,934 + +0.5 111,934 + -0.1 111,934 + +0.8 111,935 - +1.4 112,022 - -3.4 112,022 - -2.2 112,032 + -0.6 112,032 + -1.5 112,032 + -1.1 112,032 + +0.8 112,033 - +0.9 112,035 + -0.3 112,035 + -0.4 112,036 - +1.1 112,060 + DDA3937_RS00470 0.12 -0.9 112,060 + DDA3937_RS00470 0.12 -0.7 112,060 + DDA3937_RS00470 0.12 +0.2 112,060 + DDA3937_RS00470 0.12 -0.3 112,061 - DDA3937_RS00470 0.12 -0.4 112,061 - DDA3937_RS00470 0.12 -1.6 112,061 - DDA3937_RS00470 0.12 -0.9 112,147 - DDA3937_RS00470 0.22 +0.3 112,183 + DDA3937_RS00470 0.26 +0.2 112,183 + DDA3937_RS00470 0.26 +2.4 112,183 + DDA3937_RS00470 0.26 +0.7 112,183 + DDA3937_RS00470 0.26 -2.8 112,183 + DDA3937_RS00470 0.26 -1.3 112,183 + DDA3937_RS00470 0.26 +3.1 112,184 - DDA3937_RS00470 0.26 +0.3 112,184 - DDA3937_RS00470 0.26 -0.0 112,184 - DDA3937_RS00470 0.26 -1.5 112,184 - DDA3937_RS00470 0.26 -0.3 112,184 - DDA3937_RS00470 0.26 -0.2 112,234 + DDA3937_RS00470 0.32 +1.5 112,234 + DDA3937_RS00470 0.32 -2.1 112,235 - DDA3937_RS00470 0.32 +1.2 112,474 + DDA3937_RS00470 0.58 -0.0 112,474 + DDA3937_RS00470 0.58 +0.6 112,474 + DDA3937_RS00470 0.58 -1.2 112,475 - DDA3937_RS00470 0.58 -0.9 112,475 - DDA3937_RS00470 0.58 -2.2 112,475 - DDA3937_RS00470 0.58 -0.1 112,475 - DDA3937_RS00470 0.58 -0.6 112,475 - DDA3937_RS00470 0.58 -0.0 112,475 - -0.2 112,523 - DDA3937_RS00470 0.64 +0.3 112,523 - DDA3937_RS00470 0.64 +0.6 112,788 - -0.1 112,797 + -0.8 112,797 + -0.2 112,797 + -0.6 112,797 + -0.8 112,798 - -0.1 112,849 + -1.0 112,849 + +0.4 112,865 + +3.3 112,865 + -0.6 112,865 + -1.6 112,865 + -0.9 112,866 - -2.2 112,867 + -0.5 112,867 + -0.4 112,868 - -0.2 112,868 - +0.2 112,868 - +1.0 112,868 - +0.1 112,868 - -0.6 112,873 + +0.4 112,874 - -0.8 112,896 + -0.5 112,897 - +0.3 112,954 + +0.9 112,962 - -0.4 112,962 - -2.5 113,195 + DDA3937_RS00475 0.32 -0.3 113,196 - DDA3937_RS00475 0.32 -1.1 113,215 + DDA3937_RS00475 0.34 -0.1 113,561 + DDA3937_RS00475 0.69 +1.0 113,561 + DDA3937_RS00475 0.69 +2.0 113,561 + DDA3937_RS00475 0.69 -1.0 113,562 - DDA3937_RS00475 0.70 -0.0 113,562 - DDA3937_RS00475 0.70 +0.3 113,562 - DDA3937_RS00475 0.70 +0.1 113,624 + DDA3937_RS00475 0.76 +1.0 113,624 + DDA3937_RS00475 0.76 +1.0 113,624 + DDA3937_RS00475 0.76 -1.0 113,625 - DDA3937_RS00475 0.76 +1.0 113,625 - DDA3937_RS00475 0.76 +1.7 113,625 - DDA3937_RS00475 0.76 -0.0 113,625 - DDA3937_RS00475 0.76 +0.4 113,711 + DDA3937_RS00475 0.85 -3.4 113,712 - DDA3937_RS00475 0.85 -1.9 113,824 + -0.4 113,825 - -0.2 113,825 - -1.4 113,856 + +0.1 113,857 - +1.5 113,857 - +0.7 113,890 + -1.2 113,964 - DDA3937_RS00480 0.11 +0.6 113,964 - DDA3937_RS00480 0.11 +1.8 114,045 + DDA3937_RS00480 0.19 -1.4 114,045 + DDA3937_RS00480 0.19 +0.1 114,046 - DDA3937_RS00480 0.19 -1.2 114,097 + DDA3937_RS00480 0.24 +0.3 114,097 + DDA3937_RS00480 0.24 +0.5 114,097 + DDA3937_RS00480 0.24 +0.6 114,097 + DDA3937_RS00480 0.24 -0.7 114,098 - DDA3937_RS00480 0.24 -0.5 114,098 - DDA3937_RS00480 0.24 -1.3 114,098 - DDA3937_RS00480 0.24 +0.2 114,100 + DDA3937_RS00480 0.24 +1.3 114,101 - DDA3937_RS00480 0.24 +0.3 114,101 - DDA3937_RS00480 0.24 -2.3 114,101 - DDA3937_RS00480 0.24 -1.8 114,196 - DDA3937_RS00480 0.34 +0.2 114,196 - -0.6 114,322 + DDA3937_RS00480 0.46 -0.2 114,322 + DDA3937_RS00480 0.46 -0.0 114,323 - DDA3937_RS00480 0.46 -1.1 114,323 - DDA3937_RS00480 0.46 -1.9 114,366 + DDA3937_RS00480 0.50 +0.3 114,503 - DDA3937_RS00480 0.64 -0.7 114,565 + DDA3937_RS00480 0.70 -1.2 114,565 + DDA3937_RS00480 0.70 -1.9 114,565 + DDA3937_RS00480 0.70 +0.4 114,565 + DDA3937_RS00480 0.70 -0.9 114,565 + DDA3937_RS00480 0.70 -0.4 114,565 + DDA3937_RS00480 0.70 -1.7 114,566 - DDA3937_RS00480 0.70 -0.3 114,566 - DDA3937_RS00480 0.70 -1.2 114,566 - DDA3937_RS00480 0.70 +1.8 114,628 + DDA3937_RS00480 0.76 +0.0 114,629 - DDA3937_RS00480 0.77 -0.9 114,629 - DDA3937_RS00480 0.77 +1.0 114,857 + -1.9 114,857 + -0.4 114,857 + +3.1 114,858 - +0.5
Or see this region's nucleotide sequence