Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21385

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,868,823	+		DDA3937_RS21380	0.52	+1.4
4,868,920	+		DDA3937_RS21380	0.57	-1.5
4,868,920	+		DDA3937_RS21380	0.57	+0.7
4,868,921	-		DDA3937_RS21380	0.57	-0.3
4,868,921	-		DDA3937_RS21380	0.57	+1.6
4,868,921	-		DDA3937_RS21380	0.57	-0.9
4,868,924	+		DDA3937_RS21380	0.57	+0.1
4,868,924	+		DDA3937_RS21380	0.57	-0.1
4,868,924	+		DDA3937_RS21380	0.57	-1.0
4,868,924	+		DDA3937_RS21380	0.57	-1.1
4,868,925	-		DDA3937_RS21380	0.57	+1.3
4,868,925	-		DDA3937_RS21380	0.57	+0.3
4,868,925	-		DDA3937_RS21380	0.57	+1.4
4,869,033	-		DDA3937_RS21380	0.63	+1.0
4,869,053	+		DDA3937_RS21380	0.64	+0.3
4,869,123	-		DDA3937_RS21380	0.67	+0.0
4,869,124	+		DDA3937_RS21380	0.67	+0.4
4,869,124	+		DDA3937_RS21380	0.67	-0.5
4,869,125	-		DDA3937_RS21380	0.67	+1.1
4,869,125	-		DDA3937_RS21380	0.67	-0.0
4,869,132	-		DDA3937_RS21380	0.68	-0.4
4,869,132	-		DDA3937_RS21380	0.68	-0.2
4,869,174	-		DDA3937_RS21380	0.70	+2.7
4,869,187	+		DDA3937_RS21380	0.70	+0.8
4,869,187	+		DDA3937_RS21380	0.70	+1.0
4,869,187	+		DDA3937_RS21380	0.70	-1.1
4,869,187	+		DDA3937_RS21380	0.70	-0.5
4,869,187	+		DDA3937_RS21380	0.70	+2.3
4,869,187	+		DDA3937_RS21380	0.70	+0.6
4,869,187	+		DDA3937_RS21380	0.70	-2.7
4,869,187	+		DDA3937_RS21380	0.70	-0.9
4,869,187	+		DDA3937_RS21380	0.70	+0.7
4,869,188	-		DDA3937_RS21380	0.70	+0.2
4,869,188	-		DDA3937_RS21380	0.70	-1.3
4,869,188	-		DDA3937_RS21380	0.70	+0.7
4,869,188	-		DDA3937_RS21380	0.70	-0.2
4,869,188	-		DDA3937_RS21380	0.70	-0.9
4,869,188	-		DDA3937_RS21380	0.70	-1.0
4,869,191	+		DDA3937_RS21380	0.71	-2.4
4,869,192	-		DDA3937_RS21380	0.71	-0.5
4,869,215	+		DDA3937_RS21380	0.72	-0.3
4,869,475	+		DDA3937_RS21380	0.85	+0.4
4,869,526	+		DDA3937_RS21380	0.87	-0.7
4,869,529	+		DDA3937_RS21380	0.88	-0.2
4,869,530	-		DDA3937_RS21380	0.88	-0.6
4,869,530	-		DDA3937_RS21380	0.88	+0.1
4,869,530	-		DDA3937_RS21380	0.88	+0.5
4,869,530	-		DDA3937_RS21380	0.88	-0.0
4,869,609	+				+1.1
4,869,704	+				+0.9
4,869,704	+				-1.5
4,869,706	+				+1.0
4,869,717	+				+1.0
4,869,754	+				-0.5
4,869,755	-				+1.3
4,869,820	+				-0.4
4,869,820	+				-1.0
4,869,821	-				-0.6
4,869,821	-				-0.9
4,869,821	-				+1.6
4,869,821	-				-0.4
4,869,821	-				+0.3
4,869,821	-				-0.7
4,869,830	-				+0.1
4,869,830	-				+0.9
4,869,834	+				+0.2
4,869,861	+				-0.2
4,869,861	+				-0.7
4,869,861	+				-0.2
4,869,861	+				+0.5
4,869,861	+				+2.3
4,869,862	-				-0.7
4,869,862	-				-1.7
4,869,862	-				+0.5
4,869,874	+		DDA3937_RS21385	0.10	+0.7
4,869,874	+		DDA3937_RS21385	0.10	-0.3
4,869,874	+		DDA3937_RS21385	0.10	-1.0
4,869,874	+		DDA3937_RS21385	0.10	+1.2
4,869,875	-		DDA3937_RS21385	0.10	-0.3
4,869,876	+		DDA3937_RS21385	0.10	+1.6
4,869,877	-		DDA3937_RS21385	0.11	-0.9
4,869,877	-		DDA3937_RS21385	0.11	-0.1
4,869,877	-		DDA3937_RS21385	0.11	+1.5
4,869,877	-		DDA3937_RS21385	0.11	+0.7
4,869,877	-		DDA3937_RS21385	0.11	-0.0
4,869,877	-		DDA3937_RS21385	0.11	+0.0
4,869,887	+		DDA3937_RS21385	0.12	+1.3
4,869,888	-		DDA3937_RS21385	0.12	-0.4
4,869,896	-		DDA3937_RS21385	0.12	-1.0
4,869,917	-		DDA3937_RS21385	0.15	+0.6
4,870,040	+		DDA3937_RS21385	0.27	-0.1
4,870,093	-		DDA3937_RS21385	0.33	+0.1
4,870,093	-		DDA3937_RS21385	0.33	+0.1
4,870,093	-		DDA3937_RS21385	0.33	-0.7
4,870,122	+		DDA3937_RS21385	0.35	-0.1
4,870,122	+		DDA3937_RS21385	0.35	+0.3
4,870,123	-		DDA3937_RS21385	0.36	+0.6
4,870,162	+		DDA3937_RS21385	0.40	-0.3
4,870,163	-		DDA3937_RS21385	0.40	+1.7
4,870,163	-		DDA3937_RS21385	0.40	-1.0
4,870,249	+		DDA3937_RS21385	0.48	+0.8
4,870,249	+		DDA3937_RS21385	0.48	-0.9
4,870,249	+		DDA3937_RS21385	0.48	-0.6
4,870,250	-		DDA3937_RS21385	0.48	-0.4
4,870,250	-		DDA3937_RS21385	0.48	+1.9
4,870,250	-		DDA3937_RS21385	0.48	+0.1
4,870,261	-		DDA3937_RS21385	0.50	+0.8
4,870,273	+		DDA3937_RS21385	0.51	+0.2
4,870,273	+		DDA3937_RS21385	0.51	-0.3
4,870,274	-				+2.3
4,870,281	+		DDA3937_RS21385	0.52	-1.3
4,870,345	+		DDA3937_RS21385	0.58	-0.7
4,870,345	+		DDA3937_RS21385	0.58	+0.7
4,870,395	+		DDA3937_RS21385	0.63	-1.4
4,870,396	-		DDA3937_RS21385	0.63	+0.3
4,870,524	+		DDA3937_RS21385	0.76	-0.5
4,870,524	+		DDA3937_RS21385	0.76	+0.3
4,870,524	+		DDA3937_RS21385	0.76	-0.2
4,870,525	-		DDA3937_RS21385	0.76	+0.4
4,870,528	+		DDA3937_RS21385	0.77	-1.2
4,870,528	+		DDA3937_RS21385	0.77	-0.4
4,870,528	+		DDA3937_RS21385	0.77	-0.5
4,870,528	+		DDA3937_RS21385	0.77	-0.2
4,870,529	-		DDA3937_RS21385	0.77	-0.2
4,870,529	-		DDA3937_RS21385	0.77	-0.6
4,870,670	-				+1.0
4,870,732	+				-0.9
4,870,732	+				+0.3
4,870,793	-				-0.8
4,870,793	-				-0.2
4,870,834	+				+0.1
4,870,835	-				-1.0
4,870,846	-				+0.5
4,870,902	-		DDA3937_RS21390	0.13	-0.3
4,870,904	+		DDA3937_RS21390	0.13	+1.2
4,870,904	+		DDA3937_RS21390	0.13	-2.0
4,870,904	+		DDA3937_RS21390	0.13	-0.4
4,870,905	-		DDA3937_RS21390	0.13	+1.5
4,870,905	-		DDA3937_RS21390	0.13	+0.0
4,871,099	+		DDA3937_RS21390	0.30	-1.0
4,871,414	+		DDA3937_RS21390	0.58	+0.4
4,871,414	+		DDA3937_RS21390	0.58	-0.3
4,871,415	-		DDA3937_RS21390	0.58	+1.3
4,871,415	-		DDA3937_RS21390	0.58	+0.1
4,871,415	-		DDA3937_RS21390	0.58	-0.2
4,871,415	-		DDA3937_RS21390	0.58	-0.1
4,871,415	-		DDA3937_RS21390	0.58	-0.5
4,871,511	-		DDA3937_RS21390	0.66	-1.0
4,871,511	-		DDA3937_RS21390	0.66	+1.6
4,871,544	+		DDA3937_RS21390	0.69	+2.0
4,871,544	+		DDA3937_RS21390	0.69	+0.6