Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21160

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,815,243	+		DDA3937_RS21155	0.30	-2.2
4,815,244	-		DDA3937_RS21155	0.30	-0.9
4,815,258	-		DDA3937_RS21155	0.31	-0.9
4,815,301	+		DDA3937_RS21155	0.34	+0.5
4,815,301	+		DDA3937_RS21155	0.34	-0.4
4,815,301	+		DDA3937_RS21155	0.34	-0.7
4,815,301	+		DDA3937_RS21155	0.34	+1.3
4,815,302	-		DDA3937_RS21155	0.34	+1.1
4,815,302	-		DDA3937_RS21155	0.34	-0.7
4,815,302	-		DDA3937_RS21155	0.34	-1.5
4,815,302	-		DDA3937_RS21155	0.34	+1.0
4,815,308	+		DDA3937_RS21155	0.35	-1.8
4,815,309	-		DDA3937_RS21155	0.35	-0.3
4,815,359	+		DDA3937_RS21155	0.38	-0.2
4,815,411	-		DDA3937_RS21155	0.42	-0.6
4,815,441	-		DDA3937_RS21155	0.45	-2.0
4,815,512	+		DDA3937_RS21155	0.50	+1.1
4,815,543	+		DDA3937_RS21155	0.53	-0.6
4,815,543	+		DDA3937_RS21155	0.53	+0.3
4,815,566	+		DDA3937_RS21155	0.54	+0.1
4,815,586	+		DDA3937_RS21155	0.56	-1.0
4,815,587	-		DDA3937_RS21155	0.56	-1.2
4,815,639	-		DDA3937_RS21155	0.60	-0.1
4,815,639	-		DDA3937_RS21155	0.60	-1.4
4,815,669	-		DDA3937_RS21155	0.62	-3.0
4,815,752	+		DDA3937_RS21155	0.69	+0.2
4,815,786	+		DDA3937_RS21155	0.71	-1.7
4,815,866	+		DDA3937_RS21155	0.77	-3.1
4,815,866	+		DDA3937_RS21155	0.77	-0.9
4,815,867	-		DDA3937_RS21155	0.77	-0.5
4,815,870	-		DDA3937_RS21155	0.78	-1.4
4,815,898	-		DDA3937_RS21155	0.80	-0.0
4,815,924	+		DDA3937_RS21155	0.82	-1.0
4,815,927	+		DDA3937_RS21155	0.82	-1.4
4,815,927	+		DDA3937_RS21155	0.82	-1.2
4,815,931	-		DDA3937_RS21155	0.82	+0.1
4,816,024	+		DDA3937_RS21155	0.89	-1.3
4,816,025	-		DDA3937_RS21155	0.89	-2.0
4,816,148	-				-0.0
4,816,150	+				-0.5
4,816,151	-				+1.7
4,816,162	-				-1.0
4,816,162	-				-0.7
4,816,194	+				+0.7
4,816,221	-				+0.7
4,816,221	-				-1.8
4,816,221	-				-0.6
4,816,229	+				+0.4
4,816,230	-				+0.1
4,816,230	-				+1.1
4,816,377	-				-0.3
4,816,482	-		DDA3937_RS21160	0.15	-0.0
4,816,482	-		DDA3937_RS21160	0.15	-0.3
4,816,482	-		DDA3937_RS21160	0.15	-1.1
4,816,482	-		DDA3937_RS21160	0.15	+0.5
4,816,482	-		DDA3937_RS21160	0.15	-0.4
4,816,598	-		DDA3937_RS21160	0.22	-0.4
4,816,598	-		DDA3937_RS21160	0.22	-0.2
4,816,652	+		DDA3937_RS21160	0.25	+0.8
4,816,652	+		DDA3937_RS21160	0.25	+1.8
4,816,652	+		DDA3937_RS21160	0.25	-0.9
4,816,685	+		DDA3937_RS21160	0.27	+1.2
4,816,746	+		DDA3937_RS21160	0.30	-1.7
4,816,747	-		DDA3937_RS21160	0.30	-0.1
4,816,747	-		DDA3937_RS21160	0.30	+4.6
4,816,747	-		DDA3937_RS21160	0.30	-0.3
4,816,802	+		DDA3937_RS21160	0.33	-0.5
4,816,803	-		DDA3937_RS21160	0.33	-2.8
4,816,803	-		DDA3937_RS21160	0.33	+5.3
4,816,822	+		DDA3937_RS21160	0.34	-0.6
4,816,822	+		DDA3937_RS21160	0.34	-1.0
4,816,823	-		DDA3937_RS21160	0.34	-1.1
4,816,960	+		DDA3937_RS21160	0.42	-0.8
4,816,960	+		DDA3937_RS21160	0.42	+0.7
4,816,960	+		DDA3937_RS21160	0.42	+0.2
4,816,960	+				+1.3
4,816,960	+		DDA3937_RS21160	0.42	-0.2
4,816,961	-		DDA3937_RS21160	0.42	+0.5
4,816,961	-		DDA3937_RS21160	0.42	-0.5
4,816,961	-		DDA3937_RS21160	0.42	-0.7
4,816,983	+		DDA3937_RS21160	0.44	-0.4
4,816,984	-		DDA3937_RS21160	0.44	-1.0
4,816,987	+		DDA3937_RS21160	0.44	-1.6
4,816,987	+		DDA3937_RS21160	0.44	+1.4
4,816,988	-		DDA3937_RS21160	0.44	-0.4
4,816,988	-		DDA3937_RS21160	0.44	-0.9
4,817,003	+		DDA3937_RS21160	0.45	-0.0
4,817,004	-		DDA3937_RS21160	0.45	+0.7
4,817,021	+		DDA3937_RS21160	0.46	+2.0
4,817,055	+		DDA3937_RS21160	0.48	-0.6
4,817,055	+		DDA3937_RS21160	0.48	-1.6
4,817,055	+		DDA3937_RS21160	0.48	-0.8
4,817,055	+		DDA3937_RS21160	0.48	+0.5
4,817,055	+		DDA3937_RS21160	0.48	+1.1
4,817,055	+		DDA3937_RS21160	0.48	+0.3
4,817,055	+		DDA3937_RS21160	0.48	-0.2
4,817,055	+		DDA3937_RS21160	0.48	-0.4
4,817,055	+		DDA3937_RS21160	0.48	-1.4
4,817,055	+		DDA3937_RS21160	0.48	-1.0
4,817,055	+		DDA3937_RS21160	0.48	-1.2
4,817,056	-		DDA3937_RS21160	0.48	-0.3
4,817,056	-		DDA3937_RS21160	0.48	+0.0
4,817,056	-		DDA3937_RS21160	0.48	-1.1
4,817,056	-		DDA3937_RS21160	0.48	-0.6
4,817,056	-		DDA3937_RS21160	0.48	-1.7
4,817,056	-		DDA3937_RS21160	0.48	-0.8
4,817,059	+		DDA3937_RS21160	0.48	-0.6
4,817,059	+		DDA3937_RS21160	0.48	-1.0
4,817,059	+		DDA3937_RS21160	0.48	-0.7
4,817,059	+		DDA3937_RS21160	0.48	-0.7
4,817,060	-		DDA3937_RS21160	0.48	-1.4
4,817,060	-		DDA3937_RS21160	0.48	-0.9
4,817,060	-		DDA3937_RS21160	0.48	-0.9
4,817,060	-		DDA3937_RS21160	0.48	+0.5
4,817,060	-		DDA3937_RS21160	0.48	-1.8
4,817,124	-		DDA3937_RS21160	0.52	+0.5
4,817,165	+		DDA3937_RS21160	0.54	-0.5
4,817,248	+		DDA3937_RS21160	0.59	-0.3
4,817,248	+		DDA3937_RS21160	0.59	-0.2
4,817,248	+		DDA3937_RS21160	0.59	-2.2
4,817,248	+		DDA3937_RS21160	0.59	-0.9
4,817,248	+		DDA3937_RS21160	0.59	-1.5
4,817,249	-		DDA3937_RS21160	0.59	+0.6
4,817,496	+		DDA3937_RS21160	0.73	-0.5
4,817,496	+		DDA3937_RS21160	0.73	+0.8
4,817,496	+		DDA3937_RS21160	0.73	-1.2
4,817,496	+		DDA3937_RS21160	0.73	-0.8
4,817,496	+		DDA3937_RS21160	0.73	-1.5
4,817,496	+		DDA3937_RS21160	0.73	+0.2
4,817,497	-		DDA3937_RS21160	0.73	+0.6
4,817,497	-		DDA3937_RS21160	0.73	+0.4
4,817,497	-		DDA3937_RS21160	0.73	+0.1
4,817,497	-		DDA3937_RS21160	0.73	+2.0
4,817,497	-		DDA3937_RS21160	0.73	-1.0
4,817,497	-		DDA3937_RS21160	0.73	+0.2
4,817,497	-		DDA3937_RS21160	0.73	-0.5
4,817,497	-		DDA3937_RS21160	0.73	-0.1
4,817,497	-		DDA3937_RS21160	0.73	+1.1
4,817,497	-		DDA3937_RS21160	0.73	-0.0
4,817,497	-		DDA3937_RS21160	0.73	-1.1
4,817,537	+		DDA3937_RS21160	0.75	+0.1
4,817,703	+		DDA3937_RS21160	0.85	-1.4
4,817,703	+		DDA3937_RS21160	0.85	-0.4
4,817,704	-		DDA3937_RS21160	0.85	-0.9
4,817,704	-		DDA3937_RS21160	0.85	-0.8
4,817,704	-		DDA3937_RS21160	0.85	-0.5
4,817,775	+		DDA3937_RS21160	0.89	-0.7
4,817,882	+				-1.2
4,817,980	+				-1.6
4,817,980	+				-0.3
4,817,980	+				-1.1
4,817,981	-				-0.0
4,817,999	+				-0.3
4,818,005	+				-0.0
4,818,012	-				-0.6
4,818,012	-				+0.2
4,818,083	+				-1.2
4,818,192	+		DDA3937_RS21165	0.15	-1.4
4,818,192	+		DDA3937_RS21165	0.15	-0.2
4,818,192	+		DDA3937_RS21165	0.15	+0.5
4,818,193	-		DDA3937_RS21165	0.15	+1.0
4,818,193	-		DDA3937_RS21165	0.15	-1.2
4,818,193	-		DDA3937_RS21165	0.15	+4.0
4,818,236	+		DDA3937_RS21165	0.18	-1.4
4,818,339	-		DDA3937_RS21165	0.26	-0.7
4,818,414	+		DDA3937_RS21165	0.32	+0.5
4,818,414	+		DDA3937_RS21165	0.32	+0.5
4,818,414	+		DDA3937_RS21165	0.32	-0.1
4,818,433	-		DDA3937_RS21165	0.33	-1.4
4,818,577	-		DDA3937_RS21165	0.45	+0.2
4,818,577	-		DDA3937_RS21165	0.45	-0.4
4,818,577	-		DDA3937_RS21165	0.45	-0.4
4,818,641	+		DDA3937_RS21165	0.50	+0.3
4,818,706	-		DDA3937_RS21165	0.55	+0.2
4,818,825	+		DDA3937_RS21165	0.64	-0.7
4,818,825	+		DDA3937_RS21165	0.64	-0.2
4,818,825	+		DDA3937_RS21165	0.64	-0.7
4,818,825	+		DDA3937_RS21165	0.64	-1.4
4,818,825	+		DDA3937_RS21165	0.64	-2.4
4,818,825	+		DDA3937_RS21165	0.64	-1.0
4,818,825	+		DDA3937_RS21165	0.64	-1.8
4,818,826	-		DDA3937_RS21165	0.64	-0.3
4,818,826	-		DDA3937_RS21165	0.64	-1.0
4,818,826	-		DDA3937_RS21165	0.64	+3.7
4,818,826	-		DDA3937_RS21165	0.64	+0.1
4,818,826	-		DDA3937_RS21165	0.64	-1.6
4,818,831	+		DDA3937_RS21165	0.65	+0.7
4,818,831	+		DDA3937_RS21165	0.65	-0.3
4,818,831	+		DDA3937_RS21165	0.65	-0.7
4,818,832	-		DDA3937_RS21165	0.65	+0.6
4,818,841	+		DDA3937_RS21165	0.65	+0.7
4,818,841	+		DDA3937_RS21165	0.65	-1.4
4,818,842	-		DDA3937_RS21165	0.65	-2.4
4,818,877	+		DDA3937_RS21165	0.68	+0.5
4,818,910	-		DDA3937_RS21165	0.71	+1.0
4,818,910	-		DDA3937_RS21165	0.71	-1.7
4,818,910	-		DDA3937_RS21165	0.71	-2.0
4,818,910	-		DDA3937_RS21165	0.71	-1.0
4,818,910	-		DDA3937_RS21165	0.71	-0.1
4,818,912	-		DDA3937_RS21165	0.71	+7.1