Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20775 and DDA3937_RS20780 are separated by 64 nucleotides DDA3937_RS20780 and DDA3937_RS20785 are separated by 231 nucleotides
DDA3937_RS20775: DDA3937_RS20775 - acyl-CoA dehydrogenase, at 4,721,121 to 4,722,254
_RS20775
DDA3937_RS20780: DDA3937_RS20780 - hypothetical protein, at 4,722,319 to 4,722,768
_RS20780
DDA3937_RS20785: DDA3937_RS20785 - 3-oxoacyl-ACP synthase, at 4,723,000 to 4,723,923
_RS20785
Position (kb) 4722
4723 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4721.365 kb on - strand, within DDA3937_RS20775 at 4721.365 kb on - strand, within DDA3937_RS20775 at 4721.379 kb on + strand, within DDA3937_RS20775 at 4721.379 kb on + strand, within DDA3937_RS20775 at 4721.379 kb on + strand, within DDA3937_RS20775 at 4721.379 kb on + strand, within DDA3937_RS20775 at 4721.379 kb on + strand, within DDA3937_RS20775 at 4721.379 kb on + strand, within DDA3937_RS20775 at 4721.380 kb on - strand, within DDA3937_RS20775 at 4721.380 kb on - strand, within DDA3937_RS20775 at 4721.380 kb on - strand, within DDA3937_RS20775 at 4721.608 kb on - strand, within DDA3937_RS20775 at 4721.608 kb on - strand, within DDA3937_RS20775 at 4721.608 kb on - strand, within DDA3937_RS20775 at 4722.198 kb on + strand at 4722.198 kb on + strand at 4722.199 kb on - strand at 4722.231 kb on - strand at 4722.252 kb on + strand at 4722.252 kb on + strand at 4722.252 kb on + strand at 4722.252 kb on + strand at 4722.252 kb on + strand at 4722.252 kb on + strand at 4722.252 kb on + strand at 4722.253 kb on - strand at 4722.253 kb on - strand at 4722.253 kb on - strand at 4722.253 kb on - strand at 4722.293 kb on + strand at 4722.504 kb on + strand, within DDA3937_RS20780 at 4722.504 kb on + strand, within DDA3937_RS20780 at 4722.517 kb on + strand, within DDA3937_RS20780 at 4722.517 kb on + strand, within DDA3937_RS20780 at 4722.517 kb on + strand, within DDA3937_RS20780 at 4722.518 kb on - strand, within DDA3937_RS20780 at 4722.523 kb on + strand, within DDA3937_RS20780 at 4722.574 kb on + strand, within DDA3937_RS20780 at 4722.575 kb on - strand, within DDA3937_RS20780 at 4722.575 kb on - strand, within DDA3937_RS20780 at 4722.652 kb on - strand, within DDA3937_RS20780 at 4722.682 kb on + strand, within DDA3937_RS20780 at 4722.705 kb on + strand, within DDA3937_RS20780 at 4722.783 kb on + strand at 4722.822 kb on + strand at 4722.822 kb on + strand at 4722.823 kb on - strand at 4722.823 kb on - strand at 4722.823 kb on - strand at 4722.827 kb on - strand at 4722.827 kb on - strand at 4722.827 kb on - strand at 4722.827 kb on - strand at 4722.840 kb on + strand at 4722.840 kb on + strand at 4722.841 kb on - strand at 4722.841 kb on - strand at 4722.858 kb on + strand at 4722.858 kb on + strand at 4722.859 kb on - strand at 4722.876 kb on + strand at 4722.877 kb on - strand at 4722.879 kb on + strand at 4722.879 kb on + strand at 4722.879 kb on + strand at 4722.879 kb on + strand at 4722.879 kb on + strand at 4722.880 kb on - strand at 4722.880 kb on - strand at 4722.897 kb on + strand at 4722.897 kb on + strand at 4722.898 kb on - strand at 4722.898 kb on - strand at 4722.905 kb on - strand at 4722.920 kb on + strand at 4722.921 kb on - strand at 4722.921 kb on - strand at 4722.921 kb on - strand at 4722.921 kb on - strand at 4722.921 kb on - strand at 4722.924 kb on + strand at 4722.924 kb on + strand at 4722.924 kb on + strand at 4722.925 kb on - strand at 4722.925 kb on - strand at 4722.925 kb on - strand at 4722.925 kb on - strand at 4722.925 kb on - strand at 4722.938 kb on + strand at 4722.938 kb on + strand at 4723.004 kb on + strand at 4723.004 kb on + strand at 4723.004 kb on + strand at 4723.004 kb on + strand at 4723.004 kb on + strand at 4723.005 kb on - strand at 4723.005 kb on - strand at 4723.023 kb on - strand at 4723.046 kb on + strand at 4723.046 kb on + strand at 4723.046 kb on + strand at 4723.046 kb on + strand at 4723.047 kb on - strand at 4723.047 kb on - strand at 4723.047 kb on - strand at 4723.379 kb on + strand, within DDA3937_RS20785 at 4723.379 kb on + strand, within DDA3937_RS20785 at 4723.379 kb on + strand, within DDA3937_RS20785 at 4723.380 kb on - strand, within DDA3937_RS20785 at 4723.412 kb on + strand, within DDA3937_RS20785 at 4723.412 kb on + strand, within DDA3937_RS20785 at 4723.412 kb on + strand, within DDA3937_RS20785 at 4723.413 kb on - strand, within DDA3937_RS20785 at 4723.413 kb on - strand, within DDA3937_RS20785 at 4723.537 kb on + strand, within DDA3937_RS20785 at 4723.560 kb on + strand, within DDA3937_RS20785 at 4723.560 kb on + strand, within DDA3937_RS20785 at 4723.561 kb on - strand, within DDA3937_RS20785 at 4723.561 kb on - strand, within DDA3937_RS20785 at 4723.561 kb on - strand, within DDA3937_RS20785 at 4723.561 kb on - strand, within DDA3937_RS20785 at 4723.612 kb on + strand, within DDA3937_RS20785 at 4723.612 kb on + strand, within DDA3937_RS20785 at 4723.612 kb on + strand, within DDA3937_RS20785 at 4723.613 kb on - strand, within DDA3937_RS20785 at 4723.613 kb on - strand, within DDA3937_RS20785 at 4723.613 kb on - strand, within DDA3937_RS20785 at 4723.613 kb on - strand, within DDA3937_RS20785 at 4723.613 kb on - strand, within DDA3937_RS20785 at 4723.613 kb on - strand, within DDA3937_RS20785 at 4723.613 kb on - strand, within DDA3937_RS20785 at 4723.613 kb on - strand, within DDA3937_RS20785 at 4723.613 kb on - strand, within DDA3937_RS20785 at 4723.613 kb on - strand, within DDA3937_RS20785 at 4723.613 kb on - strand, within DDA3937_RS20785 at 4723.614 kb on + strand, within DDA3937_RS20785 at 4723.677 kb on + strand, within DDA3937_RS20785 at 4723.677 kb on + strand, within DDA3937_RS20785 at 4723.677 kb on + strand, within DDA3937_RS20785 at 4723.677 kb on + strand, within DDA3937_RS20785 at 4723.677 kb on + strand, within DDA3937_RS20785 at 4723.678 kb on - strand, within DDA3937_RS20785 at 4723.698 kb on + strand, within DDA3937_RS20785 at 4723.699 kb on - strand, within DDA3937_RS20785 at 4723.707 kb on + strand, within DDA3937_RS20785 at 4723.707 kb on + strand, within DDA3937_RS20785 at 4723.707 kb on + strand, within DDA3937_RS20785 at 4723.707 kb on + strand, within DDA3937_RS20785 at 4723.707 kb on + strand, within DDA3937_RS20785 at 4723.707 kb on + strand, within DDA3937_RS20785 at 4723.707 kb on + strand, within DDA3937_RS20785 at 4723.708 kb on - strand, within DDA3937_RS20785 at 4723.708 kb on - strand, within DDA3937_RS20785 at 4723.708 kb on - strand, within DDA3937_RS20785
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,721,365 - DDA3937_RS20775 0.22 +1.0 4,721,365 - DDA3937_RS20775 0.22 -0.4 4,721,379 + DDA3937_RS20775 0.23 +0.4 4,721,379 + DDA3937_RS20775 0.23 -1.4 4,721,379 + DDA3937_RS20775 0.23 -1.0 4,721,379 + DDA3937_RS20775 0.23 +0.8 4,721,379 + DDA3937_RS20775 0.23 +1.1 4,721,379 + DDA3937_RS20775 0.23 +0.6 4,721,380 - DDA3937_RS20775 0.23 -1.5 4,721,380 - DDA3937_RS20775 0.23 -0.8 4,721,380 - DDA3937_RS20775 0.23 +0.9 4,721,608 - DDA3937_RS20775 0.43 -0.6 4,721,608 - DDA3937_RS20775 0.43 -0.5 4,721,608 - DDA3937_RS20775 0.43 -0.9 4,722,198 + -0.1 4,722,198 + +0.7 4,722,199 - +0.1 4,722,231 - -0.8 4,722,252 + -1.6 4,722,252 + -1.3 4,722,252 + +0.3 4,722,252 + +0.3 4,722,252 + +1.0 4,722,252 + +1.1 4,722,252 + +0.7 4,722,253 - +0.2 4,722,253 - -0.4 4,722,253 - -0.4 4,722,253 - -2.2 4,722,293 + +0.1 4,722,504 + DDA3937_RS20780 0.41 -1.7 4,722,504 + DDA3937_RS20780 0.41 -0.6 4,722,517 + DDA3937_RS20780 0.44 -0.2 4,722,517 + DDA3937_RS20780 0.44 +0.1 4,722,517 + DDA3937_RS20780 0.44 -0.6 4,722,518 - DDA3937_RS20780 0.44 -0.9 4,722,523 + DDA3937_RS20780 0.45 +0.4 4,722,574 + DDA3937_RS20780 0.57 -1.7 4,722,575 - DDA3937_RS20780 0.57 -0.5 4,722,575 - DDA3937_RS20780 0.57 -0.5 4,722,652 - DDA3937_RS20780 0.74 -0.5 4,722,682 + DDA3937_RS20780 0.81 -0.0 4,722,705 + DDA3937_RS20780 0.86 -0.9 4,722,783 + +2.3 4,722,822 + -1.4 4,722,822 + -0.8 4,722,823 - +0.1 4,722,823 - -0.4 4,722,823 - -0.3 4,722,827 - -0.5 4,722,827 - -1.8 4,722,827 - +0.5 4,722,827 - +0.2 4,722,840 + +1.0 4,722,840 + +0.2 4,722,841 - -0.3 4,722,841 - -0.7 4,722,858 + +0.8 4,722,858 + +0.3 4,722,859 - +1.2 4,722,876 + +1.1 4,722,877 - +0.4 4,722,879 + -0.6 4,722,879 + -0.0 4,722,879 + -0.9 4,722,879 + -0.3 4,722,879 + -1.9 4,722,880 - +0.7 4,722,880 - -1.0 4,722,897 + -1.0 4,722,897 + -0.0 4,722,898 - -1.1 4,722,898 - +0.7 4,722,905 - -1.0 4,722,920 + -0.1 4,722,921 - -0.1 4,722,921 - -0.5 4,722,921 - -0.3 4,722,921 - -0.2 4,722,921 - -1.1 4,722,924 + -2.1 4,722,924 + -1.6 4,722,924 + -0.8 4,722,925 - -0.8 4,722,925 - -0.9 4,722,925 - -0.1 4,722,925 - -2.4 4,722,925 - -0.3 4,722,938 + -0.3 4,722,938 + +1.2 4,723,004 + -0.4 4,723,004 + -1.6 4,723,004 + -0.0 4,723,004 + -0.7 4,723,004 + -2.2 4,723,005 - -1.5 4,723,005 - -0.4 4,723,023 - +0.7 4,723,046 + -0.1 4,723,046 + -0.0 4,723,046 + -0.2 4,723,046 + +0.4 4,723,047 - -0.2 4,723,047 - -1.0 4,723,047 - -2.0 4,723,379 + DDA3937_RS20785 0.41 -0.0 4,723,379 + DDA3937_RS20785 0.41 -0.7 4,723,379 + DDA3937_RS20785 0.41 -1.1 4,723,380 - DDA3937_RS20785 0.41 -0.2 4,723,412 + DDA3937_RS20785 0.45 -0.8 4,723,412 + DDA3937_RS20785 0.45 -1.6 4,723,412 + DDA3937_RS20785 0.45 +0.4 4,723,413 - DDA3937_RS20785 0.45 -0.2 4,723,413 - DDA3937_RS20785 0.45 -0.3 4,723,537 + DDA3937_RS20785 0.58 -0.4 4,723,560 + DDA3937_RS20785 0.61 -0.8 4,723,560 + DDA3937_RS20785 0.61 -1.0 4,723,561 - DDA3937_RS20785 0.61 -1.0 4,723,561 - DDA3937_RS20785 0.61 +0.3 4,723,561 - DDA3937_RS20785 0.61 -1.5 4,723,561 - DDA3937_RS20785 0.61 -0.7 4,723,612 + DDA3937_RS20785 0.66 +0.2 4,723,612 + DDA3937_RS20785 0.66 +0.3 4,723,612 + DDA3937_RS20785 0.66 -0.9 4,723,613 - DDA3937_RS20785 0.66 -0.2 4,723,613 - DDA3937_RS20785 0.66 -0.3 4,723,613 - DDA3937_RS20785 0.66 +1.0 4,723,613 - DDA3937_RS20785 0.66 -0.1 4,723,613 - DDA3937_RS20785 0.66 -0.5 4,723,613 - DDA3937_RS20785 0.66 +0.4 4,723,613 - DDA3937_RS20785 0.66 -0.3 4,723,613 - DDA3937_RS20785 0.66 +0.2 4,723,613 - DDA3937_RS20785 0.66 -0.5 4,723,613 - DDA3937_RS20785 0.66 +1.3 4,723,613 - DDA3937_RS20785 0.66 +0.5 4,723,614 + DDA3937_RS20785 0.66 -0.6 4,723,677 + DDA3937_RS20785 0.73 -1.8 4,723,677 + DDA3937_RS20785 0.73 -0.2 4,723,677 + DDA3937_RS20785 0.73 -1.9 4,723,677 + DDA3937_RS20785 0.73 -1.0 4,723,677 + DDA3937_RS20785 0.73 +2.4 4,723,678 - DDA3937_RS20785 0.73 -1.6 4,723,698 + DDA3937_RS20785 0.76 -0.9 4,723,699 - DDA3937_RS20785 0.76 -2.6 4,723,707 + DDA3937_RS20785 0.77 +1.4 4,723,707 + DDA3937_RS20785 0.77 -0.9 4,723,707 + DDA3937_RS20785 0.77 +0.4 4,723,707 + DDA3937_RS20785 0.77 -0.0 4,723,707 + DDA3937_RS20785 0.77 -0.7 4,723,707 + DDA3937_RS20785 0.77 -1.1 4,723,707 + DDA3937_RS20785 0.77 -0.0 4,723,708 - DDA3937_RS20785 0.77 -0.1 4,723,708 - DDA3937_RS20785 0.77 -0.6 4,723,708 - DDA3937_RS20785 0.77 +0.3
Or see this region's nucleotide sequence