Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19805 and DDA3937_RS19810 overlap by 11 nucleotides DDA3937_RS19810 and DDA3937_RS19815 are separated by 300 nucleotides
DDA3937_RS19805: DDA3937_RS19805 - glycerol-3-phosphate dehydrogenase subunit GlpB, at 4,511,091 to 4,512,341
_RS19805
DDA3937_RS19810: DDA3937_RS19810 - anaerobic glycerol-3-phosphate dehydrogenase subunit A, at 4,512,331 to 4,513,974
_RS19810
DDA3937_RS19815: DDA3937_RS19815 - glycerol-3-phosphate transporter, at 4,514,275 to 4,515,624
_RS19815
Position (kb) 4512
4513
4514 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4511.442 kb on + strand, within DDA3937_RS19805 at 4511.464 kb on + strand, within DDA3937_RS19805 at 4511.464 kb on + strand, within DDA3937_RS19805 at 4511.464 kb on + strand, within DDA3937_RS19805 at 4511.464 kb on + strand, within DDA3937_RS19805 at 4511.464 kb on + strand, within DDA3937_RS19805 at 4511.464 kb on + strand, within DDA3937_RS19805 at 4511.465 kb on - strand, within DDA3937_RS19805 at 4511.465 kb on - strand, within DDA3937_RS19805 at 4511.465 kb on - strand, within DDA3937_RS19805 at 4511.465 kb on - strand at 4511.567 kb on + strand, within DDA3937_RS19805 at 4511.567 kb on + strand, within DDA3937_RS19805 at 4511.567 kb on + strand, within DDA3937_RS19805 at 4511.567 kb on + strand, within DDA3937_RS19805 at 4511.567 kb on + strand, within DDA3937_RS19805 at 4511.568 kb on - strand, within DDA3937_RS19805 at 4511.568 kb on - strand, within DDA3937_RS19805 at 4511.568 kb on - strand, within DDA3937_RS19805 at 4511.568 kb on - strand, within DDA3937_RS19805 at 4511.971 kb on - strand, within DDA3937_RS19805 at 4512.017 kb on + strand, within DDA3937_RS19805 at 4512.017 kb on + strand, within DDA3937_RS19805 at 4512.018 kb on - strand, within DDA3937_RS19805 at 4512.115 kb on + strand, within DDA3937_RS19805 at 4512.115 kb on + strand, within DDA3937_RS19805 at 4512.116 kb on - strand, within DDA3937_RS19805 at 4512.116 kb on - strand, within DDA3937_RS19805 at 4512.116 kb on - strand, within DDA3937_RS19805 at 4512.116 kb on - strand, within DDA3937_RS19805 at 4512.116 kb on - strand, within DDA3937_RS19805 at 4512.334 kb on + strand at 4512.402 kb on + strand at 4512.403 kb on - strand at 4512.423 kb on + strand at 4512.423 kb on + strand at 4512.423 kb on + strand at 4512.423 kb on + strand at 4512.423 kb on + strand at 4512.423 kb on + strand at 4512.423 kb on + strand at 4512.423 kb on + strand at 4512.424 kb on - strand at 4512.424 kb on - strand at 4512.424 kb on - strand at 4512.424 kb on - strand at 4512.424 kb on - strand at 4512.424 kb on - strand at 4512.447 kb on + strand at 4512.447 kb on + strand at 4512.447 kb on + strand at 4512.447 kb on + strand at 4512.448 kb on - strand at 4512.448 kb on - strand at 4512.448 kb on - strand at 4512.636 kb on - strand, within DDA3937_RS19810 at 4512.865 kb on + strand, within DDA3937_RS19810 at 4512.865 kb on + strand, within DDA3937_RS19810 at 4512.865 kb on + strand, within DDA3937_RS19810 at 4512.865 kb on + strand, within DDA3937_RS19810 at 4512.866 kb on - strand, within DDA3937_RS19810 at 4513.040 kb on + strand, within DDA3937_RS19810 at 4513.148 kb on + strand, within DDA3937_RS19810 at 4513.224 kb on + strand, within DDA3937_RS19810 at 4513.225 kb on - strand, within DDA3937_RS19810 at 4513.317 kb on - strand, within DDA3937_RS19810 at 4513.370 kb on + strand, within DDA3937_RS19810 at 4513.460 kb on + strand, within DDA3937_RS19810 at 4513.664 kb on + strand, within DDA3937_RS19810 at 4513.664 kb on + strand, within DDA3937_RS19810 at 4513.665 kb on - strand, within DDA3937_RS19810 at 4513.793 kb on + strand, within DDA3937_RS19810 at 4513.876 kb on + strand at 4513.877 kb on - strand at 4514.006 kb on + strand at 4514.006 kb on + strand at 4514.007 kb on - strand at 4514.007 kb on - strand at 4514.010 kb on + strand at 4514.010 kb on + strand at 4514.010 kb on + strand at 4514.010 kb on + strand at 4514.010 kb on + strand at 4514.096 kb on + strand at 4514.096 kb on + strand at 4514.097 kb on - strand at 4514.097 kb on - strand at 4514.132 kb on - strand at 4514.132 kb on - strand at 4514.145 kb on + strand at 4514.199 kb on + strand at 4514.199 kb on + strand at 4514.245 kb on + strand at 4514.246 kb on - strand at 4514.246 kb on - strand at 4514.246 kb on - strand at 4514.252 kb on + strand at 4514.252 kb on + strand at 4514.252 kb on + strand at 4514.252 kb on + strand at 4514.252 kb on + strand at 4514.252 kb on + strand at 4514.253 kb on - strand at 4514.253 kb on - strand at 4514.257 kb on - strand at 4514.270 kb on + strand at 4514.271 kb on - strand at 4514.274 kb on + strand at 4514.274 kb on + strand at 4514.274 kb on + strand at 4514.274 kb on + strand at 4514.275 kb on - strand at 4514.275 kb on - strand at 4514.275 kb on - strand at 4514.275 kb on - strand at 4514.284 kb on - strand at 4514.315 kb on + strand at 4514.342 kb on - strand at 4514.395 kb on + strand at 4514.398 kb on + strand at 4514.399 kb on - strand at 4514.399 kb on - strand at 4514.399 kb on - strand at 4514.399 kb on - strand at 4514.399 kb on - strand at 4514.434 kb on + strand, within DDA3937_RS19815 at 4514.434 kb on + strand, within DDA3937_RS19815 at 4514.434 kb on + strand, within DDA3937_RS19815 at 4514.555 kb on + strand, within DDA3937_RS19815 at 4514.555 kb on + strand, within DDA3937_RS19815 at 4514.845 kb on + strand, within DDA3937_RS19815 at 4514.845 kb on + strand, within DDA3937_RS19815 at 4514.845 kb on + strand, within DDA3937_RS19815 at 4514.845 kb on + strand, within DDA3937_RS19815 at 4514.845 kb on + strand, within DDA3937_RS19815 at 4514.845 kb on + strand, within DDA3937_RS19815 at 4514.846 kb on - strand, within DDA3937_RS19815 at 4514.846 kb on - strand, within DDA3937_RS19815 at 4514.846 kb on - strand, within DDA3937_RS19815 at 4514.846 kb on - strand, within DDA3937_RS19815 at 4514.846 kb on - strand, within DDA3937_RS19815 at 4514.846 kb on - strand, within DDA3937_RS19815 at 4514.846 kb on - strand, within DDA3937_RS19815 at 4514.846 kb on - strand, within DDA3937_RS19815 at 4514.847 kb on + strand, within DDA3937_RS19815 at 4514.847 kb on + strand, within DDA3937_RS19815 at 4514.847 kb on + strand, within DDA3937_RS19815 at 4514.847 kb on + strand, within DDA3937_RS19815 at 4514.848 kb on - strand, within DDA3937_RS19815 at 4514.848 kb on - strand, within DDA3937_RS19815 at 4514.848 kb on - strand, within DDA3937_RS19815 at 4514.941 kb on + strand, within DDA3937_RS19815 at 4514.942 kb on - strand, within DDA3937_RS19815 at 4514.965 kb on + strand, within DDA3937_RS19815 at 4514.965 kb on + strand, within DDA3937_RS19815
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,511,442 + DDA3937_RS19805 0.28 +0.1 4,511,464 + DDA3937_RS19805 0.30 -0.3 4,511,464 + DDA3937_RS19805 0.30 -0.2 4,511,464 + DDA3937_RS19805 0.30 -2.3 4,511,464 + DDA3937_RS19805 0.30 -0.0 4,511,464 + DDA3937_RS19805 0.30 -0.6 4,511,464 + DDA3937_RS19805 0.30 -0.1 4,511,465 - DDA3937_RS19805 0.30 -0.6 4,511,465 - DDA3937_RS19805 0.30 -0.3 4,511,465 - DDA3937_RS19805 0.30 +1.5 4,511,465 - +1.3 4,511,567 + DDA3937_RS19805 0.38 +0.3 4,511,567 + DDA3937_RS19805 0.38 -0.7 4,511,567 + DDA3937_RS19805 0.38 -2.1 4,511,567 + DDA3937_RS19805 0.38 +0.4 4,511,567 + DDA3937_RS19805 0.38 +0.7 4,511,568 - DDA3937_RS19805 0.38 +0.4 4,511,568 - DDA3937_RS19805 0.38 -0.1 4,511,568 - DDA3937_RS19805 0.38 +1.9 4,511,568 - DDA3937_RS19805 0.38 +0.2 4,511,971 - DDA3937_RS19805 0.70 -0.0 4,512,017 + DDA3937_RS19805 0.74 -0.1 4,512,017 + DDA3937_RS19805 0.74 -1.4 4,512,018 - DDA3937_RS19805 0.74 +0.3 4,512,115 + DDA3937_RS19805 0.82 -2.2 4,512,115 + DDA3937_RS19805 0.82 -2.1 4,512,116 - DDA3937_RS19805 0.82 -0.7 4,512,116 - DDA3937_RS19805 0.82 +0.1 4,512,116 - DDA3937_RS19805 0.82 +0.0 4,512,116 - DDA3937_RS19805 0.82 -0.5 4,512,116 - DDA3937_RS19805 0.82 -0.0 4,512,334 + -1.3 4,512,402 + +0.4 4,512,403 - +0.1 4,512,423 + +0.3 4,512,423 + -1.5 4,512,423 + +3.0 4,512,423 + -1.0 4,512,423 + -1.2 4,512,423 + -2.3 4,512,423 + -0.3 4,512,423 + -1.2 4,512,424 - -0.1 4,512,424 - -0.4 4,512,424 - +1.5 4,512,424 - +0.7 4,512,424 - -1.6 4,512,424 - -2.3 4,512,447 + -0.2 4,512,447 + -1.1 4,512,447 + -0.6 4,512,447 + -1.0 4,512,448 - -2.0 4,512,448 - -1.1 4,512,448 - +1.0 4,512,636 - DDA3937_RS19810 0.19 -1.6 4,512,865 + DDA3937_RS19810 0.32 -0.0 4,512,865 + DDA3937_RS19810 0.32 -1.6 4,512,865 + DDA3937_RS19810 0.32 -0.2 4,512,865 + DDA3937_RS19810 0.32 -0.5 4,512,866 - DDA3937_RS19810 0.33 -0.3 4,513,040 + DDA3937_RS19810 0.43 -0.2 4,513,148 + DDA3937_RS19810 0.50 +1.3 4,513,224 + DDA3937_RS19810 0.54 +0.7 4,513,225 - DDA3937_RS19810 0.54 +1.0 4,513,317 - DDA3937_RS19810 0.60 +0.5 4,513,370 + DDA3937_RS19810 0.63 -1.7 4,513,460 + DDA3937_RS19810 0.69 -1.6 4,513,664 + DDA3937_RS19810 0.81 -1.0 4,513,664 + DDA3937_RS19810 0.81 -1.5 4,513,665 - DDA3937_RS19810 0.81 -1.0 4,513,793 + DDA3937_RS19810 0.89 +1.5 4,513,876 + -0.3 4,513,877 - -1.3 4,514,006 + +0.2 4,514,006 + -0.4 4,514,007 - -0.2 4,514,007 - +0.3 4,514,010 + -1.2 4,514,010 + +0.3 4,514,010 + -1.1 4,514,010 + +0.5 4,514,010 + +0.3 4,514,096 + -0.3 4,514,096 + -0.8 4,514,097 - -1.1 4,514,097 - -1.6 4,514,132 - +0.7 4,514,132 - -0.3 4,514,145 + +0.3 4,514,199 + -0.6 4,514,199 + -0.8 4,514,245 + +0.2 4,514,246 - -0.3 4,514,246 - -0.1 4,514,246 - +2.3 4,514,252 + -1.2 4,514,252 + -1.3 4,514,252 + -0.4 4,514,252 + -0.4 4,514,252 + -0.9 4,514,252 + -0.4 4,514,253 - -0.3 4,514,253 - -0.3 4,514,257 - +0.6 4,514,270 + -0.6 4,514,271 - -2.8 4,514,274 + -1.3 4,514,274 + -0.5 4,514,274 + -0.5 4,514,274 + -0.8 4,514,275 - -1.0 4,514,275 - +1.3 4,514,275 - -0.2 4,514,275 - -0.5 4,514,284 - -1.3 4,514,315 + +1.3 4,514,342 - -0.3 4,514,395 + +1.4 4,514,398 + -1.0 4,514,399 - -0.7 4,514,399 - -1.3 4,514,399 - -1.0 4,514,399 - -0.1 4,514,399 - -0.6 4,514,434 + DDA3937_RS19815 0.12 -1.1 4,514,434 + DDA3937_RS19815 0.12 -1.0 4,514,434 + DDA3937_RS19815 0.12 -0.5 4,514,555 + DDA3937_RS19815 0.21 -0.5 4,514,555 + DDA3937_RS19815 0.21 -2.2 4,514,845 + DDA3937_RS19815 0.42 +1.6 4,514,845 + DDA3937_RS19815 0.42 -0.7 4,514,845 + DDA3937_RS19815 0.42 -0.5 4,514,845 + DDA3937_RS19815 0.42 -0.0 4,514,845 + DDA3937_RS19815 0.42 +0.5 4,514,845 + DDA3937_RS19815 0.42 +0.4 4,514,846 - DDA3937_RS19815 0.42 +0.1 4,514,846 - DDA3937_RS19815 0.42 +1.3 4,514,846 - DDA3937_RS19815 0.42 -0.8 4,514,846 - DDA3937_RS19815 0.42 +0.3 4,514,846 - DDA3937_RS19815 0.42 -0.5 4,514,846 - DDA3937_RS19815 0.42 -0.6 4,514,846 - DDA3937_RS19815 0.42 -1.9 4,514,846 - DDA3937_RS19815 0.42 +3.7 4,514,847 + DDA3937_RS19815 0.42 -0.3 4,514,847 + DDA3937_RS19815 0.42 +0.2 4,514,847 + DDA3937_RS19815 0.42 +3.6 4,514,847 + DDA3937_RS19815 0.42 +2.1 4,514,848 - DDA3937_RS19815 0.42 -0.5 4,514,848 - DDA3937_RS19815 0.42 +2.5 4,514,848 - DDA3937_RS19815 0.42 +0.5 4,514,941 + DDA3937_RS19815 0.49 +1.0 4,514,942 - DDA3937_RS19815 0.49 -0.4 4,514,965 + DDA3937_RS19815 0.51 -0.0 4,514,965 + DDA3937_RS19815 0.51 -0.0
Or see this region's nucleotide sequence