Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18765

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,283,943	+		DDA3937_RS18755	0.41	-1.6
4,284,173	+				-0.8
4,284,173	+				+0.9
4,284,174	-				+0.1
4,284,174	-				-0.5
4,284,174	-				+0.6
4,284,189	+				-0.4
4,284,189	+				-0.7
4,284,190	-				+0.2
4,284,218	+				+0.1
4,284,219	-				-1.8
4,284,219	-				-1.8
4,284,219	-				+0.2
4,284,269	+				-1.3
4,284,270	-				-1.4
4,284,297	+				+0.2
4,284,297	+				+2.8
4,284,297	+				-2.5
4,284,297	+				-1.6
4,284,297	+				-0.9
4,284,297	+				+2.8
4,284,304	+				+0.3
4,284,319	+				-1.1
4,284,319	+				+0.5
4,284,319	+				+1.5
4,284,319	+				-0.5
4,284,319	+				-0.1
4,284,319	+				-0.1
4,284,319	+				+0.7
4,284,320	-				+0.0
4,284,320	-				-0.3
4,284,320	-				+0.4
4,284,320	-				+0.5
4,284,320	-				-1.0
4,284,362	-		DDA3937_RS18760	0.10	-1.0
4,284,386	-		DDA3937_RS18760	0.15	-0.5
4,284,386	-		DDA3937_RS18760	0.15	+0.0
4,284,386	-		DDA3937_RS18760	0.15	+1.2
4,284,386	-		DDA3937_RS18760	0.15	-0.1
4,284,386	-		DDA3937_RS18760	0.15	-0.0
4,284,443	-		DDA3937_RS18760	0.27	-0.4
4,284,443	-		DDA3937_RS18760	0.27	-1.7
4,284,443	-		DDA3937_RS18760	0.27	-0.7
4,284,471	-		DDA3937_RS18760	0.33	-2.0
4,284,630	+		DDA3937_RS18760	0.67	+0.2
4,284,631	-		DDA3937_RS18760	0.67	-0.4
4,284,631	-		DDA3937_RS18760	0.67	+0.9
4,284,640	-		DDA3937_RS18760	0.69	+1.8
4,284,640	-		DDA3937_RS18760	0.69	-0.8
4,284,640	-		DDA3937_RS18760	0.69	+0.5
4,284,640	-		DDA3937_RS18760	0.69	-0.0
4,284,673	-		DDA3937_RS18760	0.76	-0.7
4,284,703	-				+0.2
4,284,770	-				-0.0
4,284,877	+				+0.5
4,284,929	-				+2.2
4,284,937	+				-0.4
4,284,939	+				+1.6
4,284,939	+				-1.5
4,284,940	-				+0.2
4,284,940	-				+0.6
4,284,940	-				-1.5
4,284,940	-				-0.4
4,285,048	+				-0.4
4,285,051	+				-0.3
4,285,051	+				-0.4
4,285,051	+				-0.8
4,285,051	+				+1.2
4,285,051	+				+0.4
4,285,051	+				+0.3
4,285,051	+				-1.0
4,285,052	-				-0.7
4,285,052	-				-0.2
4,285,052	-				-1.1
4,285,052	-				-0.2
4,285,052	-				-1.1
4,285,052	-				-1.7
4,285,076	+				-0.4
4,285,077	-				+0.4
4,285,077	-				-0.6
4,285,078	+				+1.1
4,285,079	-				+0.2
4,285,102	-		DDA3937_RS18765	0.11	+1.8
4,285,262	+		DDA3937_RS18765	0.21	-1.5
4,285,262	+		DDA3937_RS18765	0.21	-0.0
4,285,262	+		DDA3937_RS18765	0.21	+0.1
4,285,262	+		DDA3937_RS18765	0.21	-0.6
4,285,262	+		DDA3937_RS18765	0.21	-1.4
4,285,262	+		DDA3937_RS18765	0.21	+0.0
4,285,262	+		DDA3937_RS18765	0.21	-0.4
4,285,262	+		DDA3937_RS18765	0.21	+0.4
4,285,262	+		DDA3937_RS18765	0.21	-0.6
4,285,262	+		DDA3937_RS18765	0.21	-1.4
4,285,262	+		DDA3937_RS18765	0.21	-0.9
4,285,262	+		DDA3937_RS18765	0.21	-1.3
4,285,263	-		DDA3937_RS18765	0.21	+0.1
4,285,263	-		DDA3937_RS18765	0.21	-2.0
4,285,263	-		DDA3937_RS18765	0.21	-0.9
4,285,263	-		DDA3937_RS18765	0.21	-0.9
4,285,263	-		DDA3937_RS18765	0.21	+0.2
4,285,263	-		DDA3937_RS18765	0.21	-0.6
4,285,263	-		DDA3937_RS18765	0.21	-2.2
4,285,263	-		DDA3937_RS18765	0.21	-1.6
4,285,263	-		DDA3937_RS18765	0.21	+0.4
4,285,263	-		DDA3937_RS18765	0.21	-1.3
4,285,263	-		DDA3937_RS18765	0.21	-0.6
4,285,263	-		DDA3937_RS18765	0.21	+0.9
4,285,559	+		DDA3937_RS18765	0.41	-0.5
4,285,580	+		DDA3937_RS18765	0.42	-0.8
4,285,580	+		DDA3937_RS18765	0.42	-1.2
4,285,581	-		DDA3937_RS18765	0.42	-2.1
4,285,581	-		DDA3937_RS18765	0.42	-0.9
4,285,823	+		DDA3937_RS18765	0.58	-0.6
4,285,823	+		DDA3937_RS18765	0.58	-0.1
4,285,823	+		DDA3937_RS18765	0.58	-0.2
4,285,824	-		DDA3937_RS18765	0.58	+0.1
4,285,875	-		DDA3937_RS18765	0.62	-0.6
4,285,875	-		DDA3937_RS18765	0.62	-0.5
4,285,919	+		DDA3937_RS18765	0.65	-0.4
4,285,920	-		DDA3937_RS18765	0.65	-0.8
4,286,045	+		DDA3937_RS18765	0.73	+0.9
4,286,046	-		DDA3937_RS18765	0.73	+0.2
4,286,077	+		DDA3937_RS18765	0.75	-0.5
4,286,077	+		DDA3937_RS18765	0.75	-0.7
4,286,077	+		DDA3937_RS18765	0.75	+2.2
4,286,077	+		DDA3937_RS18765	0.75	-0.7
4,286,077	+		DDA3937_RS18765	0.75	-0.2
4,286,077	+		DDA3937_RS18765	0.75	+0.6
4,286,077	+		DDA3937_RS18765	0.75	-1.8
4,286,077	+		DDA3937_RS18765	0.75	-0.1
4,286,078	-		DDA3937_RS18765	0.75	-0.0
4,286,078	-		DDA3937_RS18765	0.75	+0.4
4,286,078	-		DDA3937_RS18765	0.75	-2.1
4,286,086	+		DDA3937_RS18765	0.75	+1.2
4,286,196	-		DDA3937_RS18765	0.83	+0.6
4,286,356	+				+1.3
4,286,356	+				-0.5
4,286,356	+				-0.7
4,286,356	+				-0.4
4,286,357	-				-0.1
4,286,358	+				-2.1
4,286,358	+				-1.3
4,286,358	+				+0.6
4,286,358	+				-0.9
4,286,358	+				+0.2
4,286,358	+				-0.1
4,286,359	-				-0.0
4,286,359	-				-0.4
4,286,359	-				-0.4
4,286,359	-				+0.5
4,286,415	+				-0.5
4,286,416	-				-1.9
4,286,474	+				-0.4
4,286,474	+				-0.2
4,286,486	-				+0.6
4,286,525	+				-0.7
4,286,525	+				-0.9
4,286,535	-				+1.3
4,287,085	+				-0.2
4,287,085	+				-1.5
4,287,085	+				-0.1
4,287,085	+				-0.5
4,287,085	+				-0.2
4,287,085	+				-2.4
4,287,086	-				-0.8
4,287,086	-				+0.5
4,287,086	-				+0.4
4,287,086	-				+0.2
4,287,153	+		DDA3937_RS18770	0.14	-0.4
4,287,154	-		DDA3937_RS18770	0.14	-0.4
4,287,267	-				+0.6
4,287,267	-		DDA3937_RS18770	0.22	-1.4
4,287,346	+		DDA3937_RS18770	0.28	-2.5
4,287,347	-		DDA3937_RS18770	0.28	-0.3
4,287,428	+		DDA3937_RS18770	0.33	-0.3
4,287,428	+		DDA3937_RS18770	0.33	-0.7
4,287,429	-		DDA3937_RS18770	0.33	-0.2