Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18385

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,199,209	+		DDA3937_RS18380	0.39	-1.7
4,199,210	-		DDA3937_RS18380	0.39	-2.1
4,199,210	-		DDA3937_RS18380	0.39	-0.6
4,199,210	-		DDA3937_RS18380	0.39	+0.2
4,199,291	+		DDA3937_RS18380	0.45	-0.6
4,199,291	+		DDA3937_RS18380	0.45	-0.5
4,199,292	-		DDA3937_RS18380	0.45	-1.7
4,199,301	+		DDA3937_RS18380	0.46	-1.1
4,199,301	+		DDA3937_RS18380	0.46	+1.2
4,199,301	+		DDA3937_RS18380	0.46	-0.2
4,199,302	-		DDA3937_RS18380	0.46	-1.5
4,199,302	-		DDA3937_RS18380	0.46	-0.0
4,199,392	+		DDA3937_RS18380	0.53	+0.9
4,199,393	-		DDA3937_RS18380	0.53	+0.0
4,199,414	+		DDA3937_RS18380	0.55	-1.9
4,199,477	+		DDA3937_RS18380	0.59	-1.0
4,199,477	+		DDA3937_RS18380	0.59	-0.4
4,199,478	-		DDA3937_RS18380	0.60	+0.5
4,199,478	-		DDA3937_RS18380	0.60	-0.6
4,199,478	-		DDA3937_RS18380	0.60	-1.3
4,199,478	-		DDA3937_RS18380	0.60	-0.8
4,199,675	+		DDA3937_RS18380	0.74	-1.0
4,199,675	+		DDA3937_RS18380	0.74	-0.8
4,199,676	-		DDA3937_RS18380	0.75	-0.1
4,199,683	+		DDA3937_RS18380	0.75	-1.4
4,199,683	+		DDA3937_RS18380	0.75	-0.2
4,199,683	+		DDA3937_RS18380	0.75	-0.4
4,199,683	+				-0.4
4,199,684	-		DDA3937_RS18380	0.75	-1.3
4,199,684	-		DDA3937_RS18380	0.75	+1.2
4,199,684	-		DDA3937_RS18380	0.75	+0.5
4,199,684	-		DDA3937_RS18380	0.75	-0.2
4,199,684	-		DDA3937_RS18380	0.75	+0.5
4,199,684	-		DDA3937_RS18380	0.75	-1.2
4,199,684	-		DDA3937_RS18380	0.75	+0.6
4,199,828	+		DDA3937_RS18380	0.86	-0.2
4,199,828	+		DDA3937_RS18380	0.86	+0.5
4,199,829	-		DDA3937_RS18380	0.86	-0.3
4,199,829	-		DDA3937_RS18380	0.86	-1.8
4,199,915	+				+1.2
4,199,916	-				-0.0
4,199,916	-				-2.4
4,199,916	-				-1.4
4,199,926	+				+0.2
4,199,969	+				+0.0
4,199,969	+				+0.6
4,199,970	-				+0.5
4,199,971	+				-1.5
4,199,972	-				+0.9
4,199,972	-				+0.2
4,199,972	-				-1.6
4,199,972	-				+1.4
4,200,033	-				+0.2
4,200,034	+				+0.5
4,200,160	+				-0.1
4,200,160	+				-0.4
4,200,188	+				-0.4
4,200,189	-				-0.1
4,200,189	-				+0.2
4,200,189	-				-0.8
4,200,208	+		DDA3937_RS18385	0.12	+0.7
4,200,209	-		DDA3937_RS18385	0.12	-2.8
4,200,209	-		DDA3937_RS18385	0.12	-0.2
4,200,210	+		DDA3937_RS18385	0.12	-2.9
4,200,210	+		DDA3937_RS18385	0.12	+0.4
4,200,210	+		DDA3937_RS18385	0.12	-0.1
4,200,210	+		DDA3937_RS18385	0.12	+0.3
4,200,210	+		DDA3937_RS18385	0.12	-1.5
4,200,210	+		DDA3937_RS18385	0.12	-2.9
4,200,210	+		DDA3937_RS18385	0.12	-1.7
4,200,210	+		DDA3937_RS18385	0.12	-0.6
4,200,210	+		DDA3937_RS18385	0.12	-0.4
4,200,210	+		DDA3937_RS18385	0.12	-0.7
4,200,211	-		DDA3937_RS18385	0.12	-1.5
4,200,211	-		DDA3937_RS18385	0.12	-0.1
4,200,211	-		DDA3937_RS18385	0.12	-2.4
4,200,211	-		DDA3937_RS18385	0.12	+0.2
4,200,211	-		DDA3937_RS18385	0.12	-1.4
4,200,211	-		DDA3937_RS18385	0.12	-2.1
4,200,211	-		DDA3937_RS18385	0.12	-2.3
4,200,211	-		DDA3937_RS18385	0.12	-1.3
4,200,211	-		DDA3937_RS18385	0.12	-1.1
4,200,211	-		DDA3937_RS18385	0.12	-2.4
4,200,355	+		DDA3937_RS18385	0.37	+0.5
4,200,669	+				+0.1
4,200,669	+				-3.6
4,200,670	-				+0.2
4,200,716	+				-0.8
4,200,716	+				-1.3
4,200,716	+				-1.3
4,200,716	+				+0.6
4,200,716	+				-0.8
4,200,716	+				+0.2
4,200,716	+				-0.9
4,200,716	+				-0.4
4,200,716	+				-1.4
4,200,716	+				-0.7
4,200,717	-				+0.0
4,200,717	-				-0.3
4,200,717	-				-2.2
4,200,717	-				+0.2
4,200,717	-				-0.1
4,200,717	-				-2.8
4,200,727	+				-2.0
4,200,812	+				+0.4
4,200,849	+				-0.7
4,200,850	-				-0.5
4,200,933	+				+1.8
4,200,933	+				+2.6
4,200,934	-				-0.9
4,200,934	-				-0.5
4,200,934	-				-1.0
4,200,937	+				-0.0
4,200,937	+				-0.4
4,200,937	+				-0.4
4,200,937	+				-1.4
4,200,938	-				-0.5
4,200,938	-				+0.3
4,200,938	-				-0.4
4,200,938	-				+0.2
4,200,938	-				-0.1
4,200,938	-				+0.5
4,200,946	-				+0.8
4,201,009	+				+0.1
4,201,010	-				+0.0
4,201,104	+				-1.2
4,201,104	+				-0.6
4,201,105	-				-0.2
4,201,187	-				-0.7
4,201,187	-				+0.2
4,201,320	+		DDA3937_RS18390	0.14	-2.4
4,201,320	+		DDA3937_RS18390	0.14	-0.6
4,201,321	-		DDA3937_RS18390	0.15	+1.2
4,201,329	+		DDA3937_RS18390	0.15	-0.2
4,201,329	+		DDA3937_RS18390	0.15	-1.4
4,201,329	+		DDA3937_RS18390	0.15	-0.8
4,201,330	-		DDA3937_RS18390	0.15	-0.6
4,201,330	-		DDA3937_RS18390	0.15	-1.0
4,201,330	-		DDA3937_RS18390	0.15	-0.6
4,201,331	+		DDA3937_RS18390	0.15	-0.1
4,201,331	+		DDA3937_RS18390	0.15	-1.2
4,201,331	+		DDA3937_RS18390	0.15	-1.2
4,201,331	+		DDA3937_RS18390	0.15	-0.5
4,201,332	-		DDA3937_RS18390	0.15	+0.2
4,201,332	-		DDA3937_RS18390	0.15	-2.2
4,201,332	-		DDA3937_RS18390	0.15	+0.2
4,201,368	+		DDA3937_RS18390	0.19	-0.8
4,201,369	-		DDA3937_RS18390	0.19	-1.4
4,201,583	+		DDA3937_RS18390	0.37	+0.2
4,201,597	+		DDA3937_RS18390	0.39	-1.4
4,201,597	+		DDA3937_RS18390	0.39	+2.2
4,201,597	+		DDA3937_RS18390	0.39	-0.8
4,201,598	-		DDA3937_RS18390	0.39	+0.4
4,201,598	-		DDA3937_RS18390	0.39	-0.7
4,201,598	-		DDA3937_RS18390	0.39	-1.2
4,201,598	-		DDA3937_RS18390	0.39	+0.3
4,201,603	+		DDA3937_RS18390	0.39	-0.3
4,201,603	+		DDA3937_RS18390	0.39	-0.8
4,201,604	-		DDA3937_RS18390	0.39	-0.7
4,201,638	-		DDA3937_RS18390	0.42	-0.6
4,201,644	-		DDA3937_RS18390	0.43	-2.0
4,201,644	-		DDA3937_RS18390	0.43	+1.4
4,201,649	+		DDA3937_RS18390	0.43	-2.1
4,201,650	-		DDA3937_RS18390	0.43	+0.8
4,201,650	-		DDA3937_RS18390	0.43	-0.2