Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17660

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,019,224	+		DDA3937_RS17645	0.76	-1.2
4,019,282	+		DDA3937_RS17645	0.89	-1.3
4,019,332	+				-0.1
4,019,362	+				+0.5
4,019,362	+				-2.3
4,019,362	+				-0.1
4,019,363	-				-0.3
4,019,363	-				-0.6
4,019,363	-				-1.0
4,019,363	-				-2.1
4,019,363	-				-0.7
4,019,512	+		DDA3937_RS17650	0.86	+0.5
4,019,512	+		DDA3937_RS17650	0.86	+0.0
4,019,512	+		DDA3937_RS17650	0.86	+1.5
4,019,513	-		DDA3937_RS17650	0.86	+1.4
4,019,513	-		DDA3937_RS17650	0.86	+0.7
4,019,513	-		DDA3937_RS17650	0.86	-1.5
4,019,513	-		DDA3937_RS17650	0.86	-0.5
4,019,513	-		DDA3937_RS17650	0.86	+0.5
4,019,646	+		DDA3937_RS17655	0.14	+0.1
4,019,646	+		DDA3937_RS17655	0.14	+1.4
4,019,716	-		DDA3937_RS17655	0.25	-1.9
4,019,716	-		DDA3937_RS17655	0.25	-0.2
4,019,826	+		DDA3937_RS17655	0.42	-0.2
4,019,827	-		DDA3937_RS17655	0.42	-1.8
4,019,827	-		DDA3937_RS17655	0.42	-0.2
4,019,827	-		DDA3937_RS17655	0.42	+0.3
4,019,827	-		DDA3937_RS17655	0.42	-0.2
4,019,832	+		DDA3937_RS17655	0.43	-0.5
4,019,832	+		DDA3937_RS17655	0.43	+1.1
4,019,861	-		DDA3937_RS17655	0.48	+0.5
4,019,861	-		DDA3937_RS17655	0.48	+0.8
4,019,922	+		DDA3937_RS17655	0.57	-0.3
4,019,923	-		DDA3937_RS17655	0.57	-0.2
4,019,985	+		DDA3937_RS17655	0.67	-0.7
4,019,985	+		DDA3937_RS17655	0.67	+0.9
4,019,985	+		DDA3937_RS17655	0.67	-0.7
4,019,986	-		DDA3937_RS17655	0.67	-0.3
4,019,986	-		DDA3937_RS17655	0.67	+1.1
4,019,986	-		DDA3937_RS17655	0.67	-0.7
4,019,986	-		DDA3937_RS17655	0.67	+0.5
4,019,986	-		DDA3937_RS17655	0.67	-1.6
4,020,111	+		DDA3937_RS17655	0.86	-0.0
4,020,114	+		DDA3937_RS17655	0.87	+0.8
4,020,114	+		DDA3937_RS17655	0.87	-0.3
4,020,115	-		DDA3937_RS17655	0.87	-1.7
4,020,115	-		DDA3937_RS17655	0.87	-0.4
4,020,115	-		DDA3937_RS17655	0.87	-0.7
4,020,115	-		DDA3937_RS17655	0.87	+1.1
4,020,132	+		DDA3937_RS17655	0.89	-0.5
4,020,158	+				-0.5
4,020,158	+				+0.5
4,020,158	+				+1.0
4,020,158	+				+1.1
4,020,159	-				+0.1
4,020,212	+				-1.6
4,020,336	-				-0.5
4,020,549	-		DDA3937_RS17660	0.19	-1.5
4,020,585	-		DDA3937_RS17660	0.21	-0.2
4,020,588	+		DDA3937_RS17660	0.21	-0.2
4,020,588	+		DDA3937_RS17660	0.21	+0.5
4,020,589	-		DDA3937_RS17660	0.21	-0.6
4,020,589	-		DDA3937_RS17660	0.21	+0.4
4,020,589	-		DDA3937_RS17660	0.21	+2.7
4,020,589	-		DDA3937_RS17660	0.21	-0.1
4,020,617	-		DDA3937_RS17660	0.23	-1.2
4,020,617	-		DDA3937_RS17660	0.23	+1.0
4,021,011	+		DDA3937_RS17660	0.45	-1.4
4,021,195	-		DDA3937_RS17660	0.55	+0.4
4,021,195	-		DDA3937_RS17660	0.55	+1.2
4,021,195	-		DDA3937_RS17660	0.55	+0.5
4,021,337	-		DDA3937_RS17660	0.63	-0.3
4,021,337	-		DDA3937_RS17660	0.63	+0.4
4,021,343	-		DDA3937_RS17660	0.63	-0.3
4,021,343	-		DDA3937_RS17660	0.63	-0.3
4,021,343	-		DDA3937_RS17660	0.63	+1.5
4,021,343	-		DDA3937_RS17660	0.63	+0.3
4,021,452	+		DDA3937_RS17660	0.69	-0.5
4,021,452	+		DDA3937_RS17660	0.69	+0.4
4,021,452	+		DDA3937_RS17660	0.69	+0.7
4,021,453	-		DDA3937_RS17660	0.69	-0.2
4,021,453	-		DDA3937_RS17660	0.69	-1.1
4,021,453	-		DDA3937_RS17660	0.69	+0.1
4,021,453	-		DDA3937_RS17660	0.69	-0.3
4,021,453	-		DDA3937_RS17660	0.69	-0.4
4,021,455	+		DDA3937_RS17660	0.69	+1.1
4,021,455	+		DDA3937_RS17660	0.69	+0.5
4,021,455	+		DDA3937_RS17660	0.69	-0.9
4,021,456	-		DDA3937_RS17660	0.69	-1.8
4,021,518	+		DDA3937_RS17660	0.73	-0.2
4,021,519	-		DDA3937_RS17660	0.73	-0.4
4,021,563	+		DDA3937_RS17660	0.75	-0.2
4,021,563	+		DDA3937_RS17660	0.75	-2.1
4,021,564	-		DDA3937_RS17660	0.75	-0.5
4,021,990	+				+1.2
4,022,001	+				+1.2
4,022,002	-				+0.5
4,022,024	+				+0.7
4,022,024	+				-0.9
4,022,025	-				+0.1
4,022,063	+				-0.8
4,022,063	+				+0.7
4,022,064	-				+1.7
4,022,316	+				+1.8
4,022,316	+				+2.8
4,022,316	+				+1.4
4,022,316	+				+1.1
4,022,316	+				+2.0
4,022,316	+				+1.4
4,022,316	+				+0.5
4,022,316	+				+1.2
4,022,317	-				+0.5
4,022,362	+				+0.7
4,022,362	+				+0.5
4,022,362	+				-0.8
4,022,362	+				-0.1
4,022,362	+				-0.6
4,022,362	+				-0.7
4,022,362	+				+0.5
4,022,363	-				-0.9
4,022,363	-				-1.6
4,022,363	-				+0.3
4,022,363	-				-0.7
4,022,364	+				-0.0
4,022,364	+				+1.6
4,022,364	+				-0.4
4,022,364	+				+0.1
4,022,364	+				+0.0
4,022,364	+				+0.8
4,022,364	+				+0.5
4,022,364	+				-0.3
4,022,364	+				-0.6
4,022,365	-				-1.0
4,022,365	-				+0.5
4,022,368	+				+0.1
4,022,368	+				+3.2
4,022,368	+				+0.9
4,022,369	-				-0.7
4,022,369	-				-0.2
4,022,369	-				-0.2
4,022,369	-				+0.9
4,022,397	+				-0.2
4,022,397	+				+0.0
4,022,397	+				+0.5
4,022,398	-				-2.1
4,022,398	-				-0.4
4,022,398	-				-0.7
4,022,398	-				-0.6
4,022,398	-				-1.3
4,022,472	+		DDA3937_RS17665	0.34	-0.3
4,022,481	+		DDA3937_RS17665	0.37	+0.6
4,022,481	+		DDA3937_RS17665	0.37	+0.5
4,022,482	-		DDA3937_RS17665	0.38	-0.7
4,022,482	-		DDA3937_RS17665	0.38	-0.5
4,022,485	-		DDA3937_RS17665	0.39	+1.2
4,022,652	+				-0.2
4,022,652	+				+0.5
4,022,653	-				-1.7
4,022,658	+				+0.4
4,022,658	+				-1.5
4,022,659	-				-1.4
4,022,754	+		DDA3937_RS17670	0.20	+0.1
4,022,755	-		DDA3937_RS17670	0.20	-1.1
4,022,834	+		DDA3937_RS17670	0.39	-0.5
4,022,835	-		DDA3937_RS17670	0.39	+0.0
4,022,845	+		DDA3937_RS17670	0.41	-0.7