Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16680

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,794,639	+		DDA3937_RS16670	0.53	+0.5
3,794,639	+		DDA3937_RS16670	0.53	+0.8
3,794,640	-		DDA3937_RS16670	0.53	-0.6
3,794,640	-		DDA3937_RS16670	0.53	-1.1
3,794,640	-		DDA3937_RS16670	0.53	-0.9
3,794,640	-		DDA3937_RS16670	0.53	+0.1
3,794,640	-		DDA3937_RS16670	0.53	-0.4
3,794,689	+		DDA3937_RS16670	0.56	+1.0
3,794,689	+		DDA3937_RS16670	0.56	-0.1
3,794,689	+		DDA3937_RS16670	0.56	-1.4
3,794,689	+		DDA3937_RS16670	0.56	-0.4
3,794,690	-		DDA3937_RS16670	0.56	+0.0
3,794,690	-		DDA3937_RS16670	0.56	-1.0
3,794,690	-		DDA3937_RS16670	0.56	+0.3
3,794,690	-		DDA3937_RS16670	0.56	+0.8
3,794,690	-		DDA3937_RS16670	0.56	-1.3
3,794,882	-		DDA3937_RS16670	0.68	-2.0
3,794,975	+		DDA3937_RS16670	0.74	-1.3
3,794,976	-		DDA3937_RS16670	0.74	-1.2
3,795,119	+		DDA3937_RS16670	0.83	-0.6
3,795,246	+				+0.8
3,795,246	+				-0.3
3,795,382	+				-0.4
3,795,382	+				+0.9
3,795,383	-				-0.6
3,795,391	+				-1.7
3,795,391	+				-0.8
3,795,391	+				-0.5
3,795,392	-				-2.2
3,795,392	-				-1.5
3,795,400	+				+0.4
3,795,401	-				+1.0
3,795,429	+				-1.8
3,795,430	-				+0.2
3,795,438	+				-0.7
3,795,438	+				-0.7
3,795,438	+				-0.2
3,795,439	-				-0.7
3,795,439	-				+0.4
3,795,469	+		DDA3937_RS16675	0.20	-1.5
3,795,614	+				+0.0
3,795,614	+				+1.6
3,795,615	-				+0.3
3,795,615	-				+0.0
3,795,615	-				+1.0
3,795,750	+				-1.3
3,795,750	+				-2.5
3,795,773	+		DDA3937_RS16680	0.11	-0.2
3,795,773	+		DDA3937_RS16680	0.11	-0.1
3,795,773	+				+2.0
3,795,774	-		DDA3937_RS16680	0.11	-1.2
3,795,850	-		DDA3937_RS16680	0.16	-0.8
3,796,305	+		DDA3937_RS16680	0.48	-0.3
3,796,305	+		DDA3937_RS16680	0.48	+0.1
3,796,305	+		DDA3937_RS16680	0.48	+0.4
3,796,305	+		DDA3937_RS16680	0.48	-0.2
3,796,305	+		DDA3937_RS16680	0.48	-1.1
3,796,305	+		DDA3937_RS16680	0.48	+2.1
3,796,305	+		DDA3937_RS16680	0.48	-0.5
3,796,305	+		DDA3937_RS16680	0.48	-0.2
3,796,305	+		DDA3937_RS16680	0.48	-0.7
3,796,306	-		DDA3937_RS16680	0.48	-0.9
3,796,306	-		DDA3937_RS16680	0.48	-2.0
3,796,306	-		DDA3937_RS16680	0.48	+0.3
3,796,306	-		DDA3937_RS16680	0.48	+0.1
3,796,306	-		DDA3937_RS16680	0.48	-0.3
3,796,306	-		DDA3937_RS16680	0.48	-1.4
3,796,306	-		DDA3937_RS16680	0.48	-0.2
3,796,306	-		DDA3937_RS16680	0.48	+0.4
3,796,306	-		DDA3937_RS16680	0.48	-0.4
3,796,306	-		DDA3937_RS16680	0.48	+0.6
3,796,306	-		DDA3937_RS16680	0.48	+0.2
3,796,306	-		DDA3937_RS16680	0.48	+1.0
3,796,306	-		DDA3937_RS16680	0.48	-0.6
3,796,306	-				+1.3
3,796,306	-		DDA3937_RS16680	0.48	+1.9
3,796,306	-		DDA3937_RS16680	0.48	+0.2
3,796,541	+		DDA3937_RS16680	0.65	-0.3
3,796,541	+		DDA3937_RS16680	0.65	+0.6
3,796,572	+		DDA3937_RS16680	0.67	+0.1
3,796,572	+		DDA3937_RS16680	0.67	+0.7
3,796,572	+		DDA3937_RS16680	0.67	+0.7
3,796,572	+		DDA3937_RS16680	0.67	-0.2
3,796,790	+		DDA3937_RS16680	0.83	-0.6
3,796,829	+		DDA3937_RS16680	0.85	+0.7
3,796,830	-		DDA3937_RS16680	0.85	+0.9
3,797,012	+				-2.7
3,797,013	-				-0.8
3,797,013	-				-0.3
3,797,032	+				-0.2
3,797,032	+				-0.6
3,797,127	+		DDA3937_RS16685	0.25	-1.4
3,797,128	-		DDA3937_RS16685	0.25	+0.6
3,797,277	-		DDA3937_RS16685	0.64	-0.1
3,797,277	-		DDA3937_RS16685	0.64	-0.1
3,797,288	-		DDA3937_RS16685	0.67	-0.8
3,797,411	+				+0.3
3,797,411	+				-0.3
3,797,437	+				-0.6
3,797,437	+				-0.3
3,797,437	+				-0.6
3,797,438	-				-0.7
3,797,438	-				-1.4
3,797,447	-				-0.3
3,797,447	-				-0.2
3,797,504	+				+2.4
3,797,504	+				+1.0
3,797,505	-				-1.1
3,797,505	-				-0.2
3,797,505	-				-1.0
3,797,505	-				-0.9
3,797,505	-				+2.0
3,797,505	-				-0.7
3,797,505	-				-0.3
3,797,507	+				+0.8
3,797,507	+				+1.0
3,797,520	+				-1.6
3,797,521	-				-1.2
3,797,521	-				-0.3
3,797,521	-				-0.9
3,797,556	-				-1.4
3,797,556	-				-0.9
3,797,603	+				-0.6
3,797,603	+				-1.0
3,797,603	+				-1.1
3,797,604	-				-0.4
3,797,604	-				-0.3
3,797,604	-				-1.0
3,797,607	+				-1.5
3,797,608	-				-1.6
3,797,608	-				-0.2
3,797,608	-				-0.2
3,797,608	-				-0.3
3,797,616	-				+0.7
3,797,646	+				-0.8
3,797,646	+				+1.0
3,797,647	-				-1.4
3,797,649	+				-0.9
3,797,649	+				-0.7
3,797,649	+				+0.8
3,797,649	+				-0.3
3,797,649	+				-0.1
3,797,649	+				-0.2
3,797,649	+				-2.6
3,797,650	-				-1.3
3,797,650	-				-0.4
3,797,650	-				+0.8
3,797,650	-				-0.1
3,797,650	-				-0.4
3,797,650	-				+1.7
3,797,650	-				-0.5
3,797,650	-				+0.4
3,797,650	-				-1.2
3,797,650	-				+0.0
3,797,653	+				-0.5
3,797,653	+				+0.0
3,797,653	+				+1.7
3,797,653	+				+0.5
3,797,654	-				-0.6
3,797,654	-				-0.3
3,797,654	-				-0.6
3,797,654	-				-1.1
3,797,654	-				+0.1
3,797,656	+				-0.1
3,797,656	+				-0.8
3,797,657	-				+1.3
3,797,657	-				-0.3
3,797,657	-				-0.2
3,797,657	-				-0.6
3,797,659	+				-0.2
3,797,659	+				-1.7
3,797,659	+				+1.1
3,797,660	-				-0.6
3,797,660	-				-0.3
3,797,680	+				+0.0
3,797,680	+				+0.4
3,797,681	-				-0.6
3,797,682	+				-1.3
3,797,682	+				+2.0
3,797,682	+				+1.3
3,797,682	+				+0.0
3,797,682	+				-0.0
3,797,682	+				+0.0
3,797,682	+				-0.7
3,797,682	+				+0.2
3,797,682	+				-0.1
3,797,682	+				-1.0
3,797,682	+				-0.2
3,797,682	+				+0.4
3,797,682	+				-0.3
3,797,682	+				-1.3
3,797,683	-				-0.1
3,797,683	-				-0.9
3,797,683	-				-1.2
3,797,683	-				+0.3
3,797,683	-				+0.0
3,797,683	-				-0.9
3,797,683	-				+0.5
3,797,683	-				-0.5
3,797,686	+				+0.6
3,797,686	+				-1.0
3,797,686	+				+1.3
3,797,686	+				-0.4
3,797,686	+				+0.1
3,797,686	+				+1.4
3,797,686	+				-0.3
3,797,686	+				-1.4
3,797,686	+				-1.0
3,797,686	+				-0.4
3,797,686	+				+0.2
3,797,687	-				-0.3
3,797,687	-				-1.2
3,797,687	-				+0.8
3,797,687	-				-0.3
3,797,687	-				-0.2
3,797,687	-				-0.1
3,797,687	-				+0.0
3,797,687	-				-0.6
3,797,687	-				-1.0
3,797,687	-				-2.1
3,797,687	-				-0.8
3,797,687	-				+0.5
3,797,690	+				+0.0
3,797,691	-				-0.6
3,797,782	+				+0.4
3,797,782	+				-0.1
3,797,782	+				+1.0
3,797,782	+				+0.4
3,797,783	-				-1.3
3,797,783	-				+0.7
3,797,783	-				-1.1
3,797,783	-				+0.3
3,797,783	-				+0.4
3,797,783	-				-0.3
3,797,783	-				+0.6
3,797,783	-				+0.5
3,797,783	-				-0.6
3,797,884	+		DDA3937_RS16690	0.20	+0.5
3,797,884	+		DDA3937_RS16690	0.20	+0.7
3,797,911	+		DDA3937_RS16690	0.23	-0.8
3,797,912	-		DDA3937_RS16690	0.23	-1.2
3,797,912	-		DDA3937_RS16690	0.23	-1.4
3,797,912	-		DDA3937_RS16690	0.23	+0.8
3,797,981	+		DDA3937_RS16690	0.30	-1.1
3,797,981	+		DDA3937_RS16690	0.30	-0.6
3,797,982	-		DDA3937_RS16690	0.30	-0.8
3,797,983	+		DDA3937_RS16690	0.30	+0.6
3,797,983	+		DDA3937_RS16690	0.30	+1.8