Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16635

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,786,121	+				-0.8
3,786,121	+		DDA3937_RS16625	0.82	-0.5
3,786,121	+		DDA3937_RS16625	0.82	-0.8
3,786,122	-		DDA3937_RS16625	0.82	-0.8
3,786,249	+				-1.3
3,786,249	+				+0.6
3,786,250	-				-1.3
3,786,250	-				+0.4
3,786,264	-				-1.7
3,786,311	+				-1.1
3,786,311	+				-0.0
3,786,338	-				-2.9
3,786,353	-				-0.7
3,786,617	-		DDA3937_RS16630	0.40	-1.1
3,786,617	-		DDA3937_RS16630	0.40	-1.3
3,786,618	+		DDA3937_RS16630	0.40	-0.7
3,786,618	+		DDA3937_RS16630	0.40	-1.0
3,786,624	+		DDA3937_RS16630	0.41	-1.6
3,786,624	+		DDA3937_RS16630	0.41	+0.8
3,786,624	+		DDA3937_RS16630	0.41	-0.7
3,786,625	-		DDA3937_RS16630	0.41	-1.8
3,786,625	-		DDA3937_RS16630	0.41	-2.1
3,786,625	-		DDA3937_RS16630	0.41	-0.6
3,786,625	-		DDA3937_RS16630	0.41	+0.4
3,786,666	+		DDA3937_RS16630	0.46	+0.4
3,786,666	+		DDA3937_RS16630	0.46	-0.2
3,786,717	-		DDA3937_RS16630	0.53	-0.1
3,786,717	-		DDA3937_RS16630	0.53	-0.6
3,786,736	-		DDA3937_RS16630	0.55	-1.2
3,786,778	-		DDA3937_RS16630	0.61	-1.7
3,786,778	-		DDA3937_RS16630	0.61	+0.4
3,786,792	+		DDA3937_RS16630	0.62	-1.2
3,786,793	-		DDA3937_RS16630	0.63	-0.9
3,786,870	+		DDA3937_RS16630	0.73	+0.5
3,786,870	+		DDA3937_RS16630	0.73	-2.2
3,786,870	+		DDA3937_RS16630	0.73	+0.2
3,786,871	-		DDA3937_RS16630	0.73	-0.5
3,786,871	-		DDA3937_RS16630	0.73	-0.7
3,786,871	-		DDA3937_RS16630	0.73	-0.7
3,786,871	-		DDA3937_RS16630	0.73	-1.2
3,786,871	-		DDA3937_RS16630	0.73	-1.9
3,786,918	+		DDA3937_RS16630	0.79	+0.0
3,786,919	-		DDA3937_RS16630	0.79	+0.8
3,786,919	-		DDA3937_RS16630	0.79	-2.0
3,786,919	-		DDA3937_RS16630	0.79	+0.5
3,786,919	-		DDA3937_RS16630	0.79	+1.0
3,787,065	-				+0.5
3,787,065	-				+0.1
3,787,065	-				-0.6
3,787,077	+				-1.5
3,787,077	+				+0.0
3,787,077	+				+0.2
3,787,078	-				-1.2
3,787,078	-				-0.3
3,787,078	-				-1.1
3,787,078	-				-1.0
3,787,080	+				+0.6
3,787,080	+				+0.6
3,787,083	+				+0.4
3,787,110	+				-1.0
3,787,111	-				-1.5
3,787,111	-				+0.9
3,787,111	-				-0.5
3,787,114	+				+2.3
3,787,114	+				-0.6
3,787,115	-				+0.4
3,787,115	-				-0.3
3,787,373	-		DDA3937_RS16635	0.21	-1.4
3,787,373	-		DDA3937_RS16635	0.21	-0.9
3,787,375	+		DDA3937_RS16635	0.21	+0.3
3,787,376	-		DDA3937_RS16635	0.21	-1.3
3,787,464	-		DDA3937_RS16635	0.28	-0.4
3,787,464	-		DDA3937_RS16635	0.28	-0.7
3,787,464	-		DDA3937_RS16635	0.28	-0.3
3,787,564	+		DDA3937_RS16635	0.36	-0.1
3,787,564	+		DDA3937_RS16635	0.36	-0.6
3,787,584	+				-0.3
3,787,685	+				+1.0
3,787,686	-		DDA3937_RS16635	0.45	-0.9
3,787,770	-		DDA3937_RS16635	0.52	-0.3
3,787,783	+		DDA3937_RS16635	0.53	-0.7
3,787,783	+		DDA3937_RS16635	0.53	-0.4
3,787,783	+		DDA3937_RS16635	0.53	-0.4
3,787,784	-		DDA3937_RS16635	0.53	-1.2
3,787,784	-		DDA3937_RS16635	0.53	-0.8
3,787,784	-		DDA3937_RS16635	0.53	-1.6
3,787,932	-		DDA3937_RS16635	0.65	-0.0
3,788,008	-		DDA3937_RS16635	0.71	-0.8
3,788,063	+		DDA3937_RS16635	0.75	+0.4
3,788,064	-		DDA3937_RS16635	0.75	-0.3
3,788,138	+		DDA3937_RS16635	0.81	-1.2
3,788,138	+		DDA3937_RS16635	0.81	+1.3
3,788,138	+		DDA3937_RS16635	0.81	-1.5
3,788,138	+		DDA3937_RS16635	0.81	-0.8
3,788,138	+		DDA3937_RS16635	0.81	-1.7
3,788,138	+		DDA3937_RS16635	0.81	-0.8
3,788,138	+		DDA3937_RS16635	0.81	-0.7
3,788,138	+		DDA3937_RS16635	0.81	-0.7
3,788,138	+		DDA3937_RS16635	0.81	+0.3
3,788,138	+		DDA3937_RS16635	0.81	-0.6
3,788,138	+		DDA3937_RS16635	0.81	-2.3
3,788,139	-		DDA3937_RS16635	0.81	+1.4
3,788,139	-		DDA3937_RS16635	0.81	+1.1
3,788,139	-		DDA3937_RS16635	0.81	+0.6
3,788,139	-		DDA3937_RS16635	0.81	-1.4
3,788,400	+				-1.6
3,788,400	+				-0.1
3,788,400	+				-1.4
3,788,400	+				-0.7
3,788,401	-				-0.2
3,788,401	-				-0.6
3,788,401	-				-0.3
3,788,401	-				+0.2
3,788,515	-		DDA3937_RS16640	0.11	-1.2
3,788,515	-		DDA3937_RS16640	0.11	-0.7
3,788,662	+		DDA3937_RS16640	0.23	-2.2
3,788,688	-		DDA3937_RS16640	0.25	+0.0
3,788,695	+		DDA3937_RS16640	0.26	-1.9
3,788,695	+		DDA3937_RS16640	0.26	+0.3
3,788,696	-		DDA3937_RS16640	0.26	+0.0
3,788,696	-		DDA3937_RS16640	0.26	-0.4
3,788,822	-		DDA3937_RS16640	0.36	+0.0
3,788,851	-		DDA3937_RS16640	0.38	-0.8
3,788,877	+		DDA3937_RS16640	0.40	-2.0
3,788,877	+		DDA3937_RS16640	0.40	+0.2
3,788,877	+		DDA3937_RS16640	0.40	+0.3
3,788,878	-		DDA3937_RS16640	0.40	+0.9
3,788,878	-		DDA3937_RS16640	0.40	-0.3
3,788,948	-		DDA3937_RS16640	0.46	+0.2
3,788,948	-		DDA3937_RS16640	0.46	+2.2
3,789,105	+		DDA3937_RS16640	0.59	-1.8
3,789,105	+		DDA3937_RS16640	0.59	-1.7
3,789,113	+		DDA3937_RS16640	0.59	-2.2
3,789,113	+		DDA3937_RS16640	0.59	-0.8
3,789,113	+		DDA3937_RS16640	0.59	+0.1
3,789,113	+		DDA3937_RS16640	0.59	+0.4
3,789,114	-		DDA3937_RS16640	0.59	-1.0
3,789,114	-		DDA3937_RS16640	0.59	+0.9
3,789,114	-		DDA3937_RS16640	0.59	-3.0
3,789,114	-		DDA3937_RS16640	0.59	-1.2
3,789,133	+		DDA3937_RS16640	0.61	-1.1
3,789,230	+		DDA3937_RS16640	0.69	-0.8
3,789,230	+		DDA3937_RS16640	0.69	+1.0
3,789,230	+		DDA3937_RS16640	0.69	-2.0
3,789,231	-		DDA3937_RS16640	0.69	-0.6
3,789,244	+		DDA3937_RS16640	0.70	-0.4
3,789,245	-		DDA3937_RS16640	0.70	-1.4
3,789,248	+		DDA3937_RS16640	0.70	-1.8
3,789,248	+		DDA3937_RS16640	0.70	-3.2
3,789,249	-		DDA3937_RS16640	0.70	-0.6