Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16005

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,658,972	+		DDA3937_RS16000	0.54	-0.8
3,658,972	+		DDA3937_RS16000	0.54	-0.0
3,658,972	+		DDA3937_RS16000	0.54	-1.5
3,658,988	-		DDA3937_RS16000	0.55	-0.3
3,659,023	+		DDA3937_RS16000	0.58	-0.1
3,659,023	+		DDA3937_RS16000	0.58	-0.7
3,659,024	-		DDA3937_RS16000	0.58	-0.5
3,659,024	-		DDA3937_RS16000	0.58	+1.2
3,659,040	+		DDA3937_RS16000	0.59	-0.2
3,659,047	-		DDA3937_RS16000	0.59	-0.2
3,659,047	-		DDA3937_RS16000	0.59	+0.4
3,659,063	+				+1.3
3,659,074	-		DDA3937_RS16000	0.61	-1.2
3,659,074	-		DDA3937_RS16000	0.61	-1.2
3,659,107	+		DDA3937_RS16000	0.63	+0.2
3,659,161	+		DDA3937_RS16000	0.66	-0.2
3,659,161	+				+1.4
3,659,162	-		DDA3937_RS16000	0.66	-0.9
3,659,162	-				+1.6
3,659,162	-		DDA3937_RS16000	0.66	-2.9
3,659,246	+		DDA3937_RS16000	0.72	-1.1
3,659,246	+		DDA3937_RS16000	0.72	-0.9
3,659,247	-		DDA3937_RS16000	0.72	-1.1
3,659,247	-		DDA3937_RS16000	0.72	+0.1
3,659,247	-		DDA3937_RS16000	0.72	-2.6
3,659,253	-		DDA3937_RS16000	0.72	-0.4
3,659,253	-		DDA3937_RS16000	0.72	-0.6
3,659,260	+		DDA3937_RS16000	0.72	-1.1
3,659,261	-		DDA3937_RS16000	0.72	+0.7
3,659,293	+		DDA3937_RS16000	0.74	-0.5
3,659,293	+		DDA3937_RS16000	0.74	-0.6
3,659,293	+		DDA3937_RS16000	0.74	+0.2
3,659,294	-		DDA3937_RS16000	0.75	+0.2
3,659,294	-				+2.0
3,659,294	-		DDA3937_RS16000	0.75	-0.1
3,659,355	-				+2.7
3,659,355	-		DDA3937_RS16000	0.78	-1.5
3,659,399	+		DDA3937_RS16000	0.81	-1.2
3,659,399	+				+1.0
3,659,399	+		DDA3937_RS16000	0.81	-1.0
3,659,418	-		DDA3937_RS16000	0.82	+0.4
3,659,444	-		DDA3937_RS16000	0.84	-1.2
3,659,559	+				-0.2
3,659,559	+				-0.9
3,659,560	-				+0.6
3,659,567	+				-1.5
3,659,676	+				-2.0
3,659,676	+				+0.5
3,659,676	+				-1.7
3,659,677	-				+0.1
3,659,677	-				-1.6
3,659,691	+				+0.6
3,659,692	-				+0.1
3,659,735	-				+0.8
3,659,735	-				+0.5
3,659,735	-				+2.6
3,659,737	+				-0.9
3,659,737	+				+0.6
3,659,737	+				-0.1
3,659,738	-				-0.3
3,659,740	+				-0.1
3,659,740	+				-1.3
3,659,740	+				-1.6
3,659,741	-				+1.2
3,659,741	-				-1.9
3,659,741	-				+1.4
3,659,768	-				-0.8
3,659,768	-				-1.3
3,659,773	+				+0.7
3,659,773	+				-2.1
3,659,773	+				+0.7
3,659,774	-				-1.4
3,659,774	-				-1.0
3,659,774	-				-0.6
3,659,780	+				-1.3
3,659,780	+				-1.0
3,659,784	+				+1.1
3,659,784	+				+1.0
3,659,792	-				+1.3
3,659,809	+				+1.3
3,659,809	+				-0.3
3,659,809	+				+1.0
3,659,809	+				-0.3
3,659,810	-				-0.4
3,659,810	-				-1.1
3,659,810	-				+2.0
3,659,810	-				-1.0
3,659,810	-				-0.3
3,659,810	-				+2.3
3,659,810	-				-0.9
3,659,810	-				-0.9
3,659,875	+				-0.5
3,659,876	-				-0.9
3,659,876	-				+0.3
3,659,897	+				-1.8
3,659,916	+				-0.5
3,659,916	+				+0.5
3,659,916	+				-0.1
3,659,917	-				+0.2
3,660,001	+		DDA3937_RS16005	0.17	-1.1
3,660,081	-		DDA3937_RS16005	0.40	+0.4
3,660,158	+		DDA3937_RS16005	0.62	-2.5
3,660,159	-		DDA3937_RS16005	0.62	-0.9
3,660,159	-		DDA3937_RS16005	0.62	-0.0
3,660,159	-		DDA3937_RS16005	0.62	-0.6
3,660,271	-				+2.0
3,660,281	-				-0.2
3,660,281	-				-0.7
3,660,287	+				-0.8
3,660,288	-				+1.0
3,660,288	-				+0.3
3,660,295	-				-1.2
3,660,307	-				+1.0
3,660,344	+				+1.9
3,660,344	+				+0.7
3,660,344	+				+0.2
3,660,344	+				-0.3
3,660,344	+				-1.0
3,660,344	+				+0.2
3,660,344	+				-1.3
3,660,344	+				+2.3
3,660,344	+				+0.3
3,660,344	+				+1.0
3,660,344	+				-0.2
3,660,344	+				-1.4
3,660,344	+				-0.1
3,660,345	-				+0.5
3,660,345	-				+0.6
3,660,345	-				-1.7
3,660,348	+				-1.2
3,660,348	+				+1.4
3,660,348	+				-1.6
3,660,348	+				-1.3
3,660,348	+				+0.5
3,660,348	+				-1.9
3,660,348	+				-2.4
3,660,349	-				-0.1
3,660,349	-				+1.4
3,660,349	-				+1.0
3,660,353	+				-0.7
3,660,394	+				-0.0
3,660,394	+				-1.6
3,660,394	+				+0.3
3,660,395	-				-1.8
3,660,395	-				-0.3
3,660,419	+				-1.3
3,660,473	+				-0.1
3,660,474	-				-0.7
3,660,474	-				+1.4
3,660,474	-				-0.8
3,660,474	-				+0.9
3,660,474	-				-0.8
3,660,536	-				-0.0
3,660,552	+		DDA3937_RS16010	0.18	-1.0
3,660,553	-		DDA3937_RS16010	0.18	-0.3
3,660,584	+		DDA3937_RS16010	0.22	+0.7
3,660,585	-				+1.4
3,660,694	+		DDA3937_RS16010	0.34	-0.4
3,660,694	+		DDA3937_RS16010	0.34	-1.9
3,660,699	+		DDA3937_RS16010	0.35	-0.3
3,660,699	+		DDA3937_RS16010	0.35	-0.0
3,660,699	+		DDA3937_RS16010	0.35	-0.2
3,660,699	+		DDA3937_RS16010	0.35	-0.3
3,660,699	+		DDA3937_RS16010	0.35	-1.3
3,660,699	+		DDA3937_RS16010	0.35	+1.0
3,660,699	+		DDA3937_RS16010	0.35	-1.7
3,660,699	+		DDA3937_RS16010	0.35	-1.3
3,660,700	-		DDA3937_RS16010	0.35	-0.0
3,660,700	-		DDA3937_RS16010	0.35	-0.2
3,660,700	-		DDA3937_RS16010	0.35	-0.0
3,660,700	-		DDA3937_RS16010	0.35	-0.6
3,660,700	-		DDA3937_RS16010	0.35	-1.0
3,660,700	-		DDA3937_RS16010	0.35	-2.8
3,660,700	-		DDA3937_RS16010	0.35	-0.6
3,660,700	-		DDA3937_RS16010	0.35	+0.4
3,660,700	-		DDA3937_RS16010	0.35	-0.1
3,660,700	-		DDA3937_RS16010	0.35	-0.3
3,660,700	-		DDA3937_RS16010	0.35	+0.9
3,660,700	-		DDA3937_RS16010	0.35	-2.2
3,660,700	-		DDA3937_RS16010	0.35	-0.3
3,660,756	-		DDA3937_RS16010	0.41	-1.1
3,660,823	+		DDA3937_RS16010	0.49	-3.4
3,660,824	-		DDA3937_RS16010	0.49	+1.0
3,660,907	+		DDA3937_RS16010	0.59	-2.0
3,660,955	+		DDA3937_RS16010	0.64	-1.5
3,661,009	+		DDA3937_RS16010	0.71	-0.5
3,661,031	+				-0.3
3,661,032	-		DDA3937_RS16010	0.73	+0.4
3,661,073	+		DDA3937_RS16010	0.78	-1.0
3,661,074	-		DDA3937_RS16010	0.78	-0.6
3,661,074	-		DDA3937_RS16010	0.78	-0.7
3,661,076	+		DDA3937_RS16010	0.78	-1.2
3,661,126	+		DDA3937_RS16010	0.84	-1.3
3,661,127	-		DDA3937_RS16010	0.84	+0.7
3,661,141	+		DDA3937_RS16010	0.86	-1.5
3,661,142	-		DDA3937_RS16010	0.86	-0.3
3,661,185	-				-1.3
3,661,187	+				-0.8
3,661,187	+				-0.9
3,661,188	-				+0.8
3,661,275	+				-1.2
3,661,288	+				+0.5