Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15705

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,599,482	+		DDA3937_RS15700	0.86	+1.0
3,599,515	+		DDA3937_RS15700	0.88	+0.5
3,599,515	+		DDA3937_RS15700	0.88	+0.4
3,599,547	-		DDA3937_RS15700	0.90	-0.0
3,599,661	+				-1.0
3,599,667	+				+0.7
3,599,667	+				-0.2
3,599,667	+				+0.8
3,599,668	-				+1.0
3,599,668	-				-0.1
3,599,668	-				-0.1
3,599,670	+				-0.0
3,599,670	+				+0.2
3,599,670	+				-0.0
3,599,670	+				-0.0
3,599,671	-				-3.0
3,599,671	-				-0.9
3,599,671	-				-0.4
3,599,674	-				+0.6
3,599,676	+				-0.7
3,599,685	+				+2.0
3,599,685	+				+0.2
3,599,688	-				+0.6
3,599,702	+				-1.8
3,599,774	+				-0.6
3,599,774	+				-0.0
3,599,774	+				+1.0
3,599,774	+				+1.6
3,599,774	+				-0.5
3,599,774	+				+0.3
3,599,775	-				+1.0
3,599,775	-				+1.6
3,599,775	-				+0.8
3,599,775	-				+0.5
3,599,775	-				+2.0
3,599,820	+				-0.7
3,599,820	+				-0.3
3,599,821	-				+0.7
3,599,821	-				-1.7
3,599,843	-				-1.5
3,599,843	-				+0.4
3,599,843	-				-1.2
3,599,843	-				-1.0
3,599,873	+				-1.7
3,599,887	+				+0.2
3,599,887	+				+0.3
3,599,887	+				-1.4
3,599,887	+				-1.1
3,599,899	+				+0.4
3,599,900	-				+0.7
3,599,900	-				+0.4
3,599,919	+				-1.6
3,599,920	-				-0.1
3,599,924	-				+1.5
3,599,924	-				-0.3
3,599,927	-				-0.3
3,599,941	+				+0.4
3,599,957	-				+1.4
3,599,959	+				-1.2
3,599,959	+				-0.0
3,599,966	-				-0.9
3,599,966	-				+1.2
3,599,969	+				-1.5
3,599,977	+				+1.4
3,599,977	+				-3.0
3,599,977	+				-0.0
3,599,978	-				-0.7
3,599,978	-				-0.2
3,599,978	-				-0.8
3,599,987	+				-0.6
3,599,990	+				-0.2
3,599,998	+				+2.4
3,600,062	+				+2.0
3,600,100	-				+0.6
3,600,197	+				+0.4
3,600,198	-				-0.9
3,600,233	-				-0.8
3,600,233	-				+1.0
3,600,273	+				-1.0
3,600,274	-				-0.0
3,600,274	-				+0.2
3,600,340	+				-0.4
3,600,345	+				-0.6
3,600,346	-				+1.6
3,600,461	+				-0.6
3,600,461	+				-0.3
3,600,477	+				-1.6
3,600,477	+				-2.1
3,600,477	+				-0.0
3,600,478	-				-0.4
3,600,478	-				-0.5
3,600,478	-				+0.1
3,600,478	-				+0.2
3,600,478	-				+0.4
3,600,478	-				-0.2
3,600,556	+		DDA3937_RS15705	0.10	+1.4
3,600,556	+		DDA3937_RS15705	0.10	+2.8
3,600,556	+		DDA3937_RS15705	0.10	+3.3
3,600,556	+		DDA3937_RS15705	0.10	+1.7
3,600,556	+		DDA3937_RS15705	0.10	+2.3
3,600,557	-		DDA3937_RS15705	0.10	+0.2
3,600,557	-		DDA3937_RS15705	0.10	+1.4
3,600,557	-		DDA3937_RS15705	0.10	+1.3
3,600,586	+		DDA3937_RS15705	0.14	+2.0
3,600,616	+		DDA3937_RS15705	0.18	+2.8
3,600,616	+		DDA3937_RS15705	0.18	+1.9
3,600,616	+		DDA3937_RS15705	0.18	+3.0
3,600,617	-		DDA3937_RS15705	0.18	+2.8
3,600,617	-		DDA3937_RS15705	0.18	+2.1
3,600,617	-		DDA3937_RS15705	0.18	+2.0
3,600,617	-		DDA3937_RS15705	0.18	+2.8
3,600,621	+		DDA3937_RS15705	0.18	+2.3
3,600,621	+		DDA3937_RS15705	0.18	+2.7
3,600,621	+		DDA3937_RS15705	0.18	+1.9
3,600,622	-		DDA3937_RS15705	0.18	+2.7
3,600,685	+		DDA3937_RS15705	0.26	+0.8
3,600,685	+		DDA3937_RS15705	0.26	+3.3
3,600,686	-		DDA3937_RS15705	0.27	+2.1
3,600,720	+		DDA3937_RS15705	0.31	+1.1
3,600,720	+		DDA3937_RS15705	0.31	+2.5
3,600,721	-		DDA3937_RS15705	0.31	+1.0
3,600,721	-		DDA3937_RS15705	0.31	+0.6
3,600,929	-		DDA3937_RS15705	0.57	+2.4
3,600,984	-		DDA3937_RS15705	0.64	+1.6
3,601,006	+		DDA3937_RS15705	0.67	+2.3
3,601,007	-		DDA3937_RS15705	0.67	-0.8
3,601,007	-		DDA3937_RS15705	0.67	+3.1
3,601,007	-		DDA3937_RS15705	0.67	+2.4
3,601,010	+		DDA3937_RS15705	0.67	+3.3
3,601,010	+		DDA3937_RS15705	0.67	+2.3
3,601,028	-		DDA3937_RS15705	0.70	+3.9
3,601,041	+		DDA3937_RS15705	0.71	+2.3
3,601,042	-		DDA3937_RS15705	0.71	+1.3
3,601,042	-		DDA3937_RS15705	0.71	+1.3
3,601,126	+		DDA3937_RS15705	0.82	+3.6
3,601,131	+		DDA3937_RS15705	0.83	+2.8
3,601,240	+				+3.4
3,601,240	+				+2.4
3,601,253	+				+1.2
3,601,253	+				+0.9
3,601,253	+				+1.0
3,601,253	+				-0.5
3,601,253	+				+3.4
3,601,253	+				+2.9
3,601,253	+				+3.5
3,601,254	-				+0.3
3,601,254	-				+2.5
3,601,254	-				-0.8
3,601,254	-				+1.6
3,601,254	-				+2.7
3,601,254	-				+2.7
3,601,254	-				-1.6
3,601,254	-				+2.2
3,601,255	+				+3.9
3,601,255	+				+2.6
3,601,255	+				+2.6
3,601,255	+				+2.4
3,601,255	+				+3.3
3,601,255	+				-0.6
3,601,256	-				+3.3
3,601,256	-				+0.6
3,601,256	-				+2.2
3,601,256	-				+0.9
3,601,256	-				+1.2
3,601,256	-				+1.4
3,601,256	-				+1.2
3,601,256	-				+1.5
3,601,276	-				-1.1
3,601,276	-				-1.0
3,601,281	+				+2.7
3,601,281	+				+2.1
3,601,281	+				-0.4
3,601,282	-				-1.2
3,601,282	-				+0.0
3,601,288	-				+2.4
3,601,293	+				+1.7
3,601,293	+				+4.4
3,601,293	+				+4.1
3,601,294	-				-0.4
3,601,295	+				+1.5
3,601,295	+				+2.7
3,601,306	+				+2.2
3,601,306	+				+1.9
3,601,306	+				+4.2
3,601,306	+				+1.2
3,601,306	+				+1.5
3,601,306	+				+0.6
3,601,306	+				+2.0
3,601,306	+				-2.2
3,601,306	+				+0.8
3,601,306	+				+2.1
3,601,306	+				+1.2
3,601,306	+				+1.3
3,601,306	+				+1.9
3,601,307	-				-0.6
3,601,307	-				+1.4
3,601,307	-				+1.4
3,601,307	-				-0.7
3,601,307	-				+0.4
3,601,307	-				-0.7
3,601,307	-				-0.4
3,601,307	-				+1.6
3,601,307	-				-1.1
3,601,307	-				-0.7
3,601,307	-				-1.2
3,601,307	-				-0.2
3,601,307	-				+0.6
3,601,355	+				+1.2
3,601,365	+				-0.6
3,601,365	+				+0.1
3,601,365	+				+1.2
3,601,371	-				+0.4
3,601,371	-				-0.7
3,601,371	-				-0.1
3,601,420	-				+1.4
3,601,447	+				+0.7
3,601,447	+				+0.4
3,601,448	-				-0.0
3,601,460	+				+0.3
3,601,461	-				+0.5
3,601,481	+				+0.7
3,601,481	+				+2.4
3,601,482	-				-0.4
3,601,482	-				-0.8
3,601,482	-				-0.5
3,601,483	+				+1.5
3,601,484	-				+0.0
3,601,484	-				-0.2
3,601,484	-				-1.6
3,601,503	+				+0.5
3,601,503	+				-0.4
3,601,541	+				-0.5
3,601,580	+				+1.0
3,601,581	-				-1.1
3,601,581	-				+0.4
3,601,581	-				+0.6
3,601,582	+				+0.1
3,601,582	+				-1.0
3,601,582	+				-1.3
3,601,645	+		DDA3937_RS15710	0.11	-0.2
3,601,646	-		DDA3937_RS15710	0.11	+1.0
3,601,646	-		DDA3937_RS15710	0.11	+0.8
3,601,655	-		DDA3937_RS15710	0.15	+0.3
3,601,706	+		DDA3937_RS15710	0.34	-0.6
3,601,706	+		DDA3937_RS15710	0.34	-0.5
3,601,706	+		DDA3937_RS15710	0.34	-1.1
3,601,707	-		DDA3937_RS15710	0.35	+0.4
3,601,722	+		DDA3937_RS15710	0.41	-0.4
3,601,723	-		DDA3937_RS15710	0.41	-1.7
3,601,723	-		DDA3937_RS15710	0.41	-0.8
3,601,729	+		DDA3937_RS15710	0.43	-0.9
3,601,730	-		DDA3937_RS15710	0.44	-1.9
3,601,808	-		DDA3937_RS15710	0.74	-0.1
3,601,808	-		DDA3937_RS15710	0.74	-1.5
3,601,872	+				-0.4
3,601,872	+				+0.4
3,601,873	-				-1.9
3,601,873	-				-1.1
3,601,873	-				+1.0
3,601,873	-				-1.2
3,601,874	+				+1.7
3,601,874	+				-1.5
3,601,874	+				+0.1
3,601,875	-				-0.9
3,601,875	-				-1.5
3,601,875	-				+0.0
3,601,875	-				+0.2
3,601,875	-				+1.0
3,601,875	-				+0.2
3,601,891	+				+0.2
3,601,892	-				-0.7
3,601,892	-				+0.8
3,601,892	-				+0.6
3,601,892	-				-0.5
3,601,908	+				-1.7
3,601,909	-				-0.4
3,601,909	-				-0.7
3,601,909	-				+0.3
3,601,909	-				+0.9
3,602,052	+		DDA3937_RS15715	0.30	-1.7
3,602,052	+		DDA3937_RS15715	0.30	-1.2
3,602,118	-		DDA3937_RS15715	0.47	+1.1
3,602,201	-		DDA3937_RS15715	0.69	+2.1