Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15695

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,596,336	+		DDA3937_RS15690	0.54	-1.3
3,596,336	+				+3.8
3,596,337	-		DDA3937_RS15690	0.54	+1.2
3,596,408	+		DDA3937_RS15690	0.58	+0.8
3,596,408	+		DDA3937_RS15690	0.58	+1.2
3,596,408	+		DDA3937_RS15690	0.58	-0.6
3,596,408	+		DDA3937_RS15690	0.58	-1.8
3,596,409	-		DDA3937_RS15690	0.58	-0.4
3,596,409	-		DDA3937_RS15690	0.58	-1.7
3,596,409	-		DDA3937_RS15690	0.58	+1.0
3,596,410	+		DDA3937_RS15690	0.58	-1.6
3,596,410	+		DDA3937_RS15690	0.58	+0.2
3,596,410	+		DDA3937_RS15690	0.58	-0.1
3,596,410	+		DDA3937_RS15690	0.58	+1.6
3,596,410	+		DDA3937_RS15690	0.58	-0.2
3,596,411	-		DDA3937_RS15690	0.58	-1.0
3,596,411	-		DDA3937_RS15690	0.58	-1.1
3,596,411	-		DDA3937_RS15690	0.58	-0.4
3,596,411	-				-0.0
3,596,411	-				+1.4
3,596,432	+		DDA3937_RS15690	0.59	-0.9
3,596,433	-		DDA3937_RS15690	0.59	-2.2
3,596,459	-		DDA3937_RS15690	0.60	+4.0
3,596,459	-		DDA3937_RS15690	0.60	-1.2
3,596,459	-		DDA3937_RS15690	0.60	-0.7
3,596,567	+				+0.4
3,596,623	-		DDA3937_RS15690	0.67	-0.7
3,596,623	-		DDA3937_RS15690	0.67	-0.5
3,596,685	+		DDA3937_RS15690	0.70	-0.3
3,596,688	+		DDA3937_RS15690	0.70	-1.2
3,596,689	-		DDA3937_RS15690	0.70	+0.3
3,596,689	-		DDA3937_RS15690	0.70	+0.8
3,596,689	-		DDA3937_RS15690	0.70	+0.6
3,596,779	+		DDA3937_RS15690	0.74	-0.8
3,596,779	+		DDA3937_RS15690	0.74	-0.4
3,596,780	-		DDA3937_RS15690	0.75	-1.0
3,596,816	+		DDA3937_RS15690	0.76	-2.0
3,596,816	+		DDA3937_RS15690	0.76	+0.2
3,596,817	-		DDA3937_RS15690	0.76	-0.6
3,596,817	-		DDA3937_RS15690	0.76	-0.5
3,596,863	+		DDA3937_RS15690	0.78	+1.6
3,596,929	+		DDA3937_RS15690	0.81	+1.0
3,596,930	-		DDA3937_RS15690	0.81	-0.0
3,596,930	-		DDA3937_RS15690	0.81	-0.9
3,596,933	+		DDA3937_RS15690	0.82	-0.4
3,596,933	+		DDA3937_RS15690	0.82	+0.2
3,596,933	+		DDA3937_RS15690	0.82	+2.0
3,596,933	+		DDA3937_RS15690	0.82	-0.3
3,596,934	-		DDA3937_RS15690	0.82	-1.7
3,596,934	-		DDA3937_RS15690	0.82	+1.0
3,596,934	-		DDA3937_RS15690	0.82	+0.2
3,596,934	-		DDA3937_RS15690	0.82	-0.9
3,597,007	+		DDA3937_RS15690	0.85	+0.3
3,597,007	+		DDA3937_RS15690	0.85	-1.0
3,597,008	-		DDA3937_RS15690	0.85	-0.4
3,597,009	+		DDA3937_RS15690	0.85	-1.2
3,597,010	-		DDA3937_RS15690	0.85	-0.6
3,597,010	-		DDA3937_RS15690	0.85	-1.7
3,597,157	-				-1.0
3,597,157	-				+1.2
3,597,175	+				-1.5
3,597,175	+				-1.2
3,597,175	+				-1.7
3,597,176	-				-0.9
3,597,176	-				-0.1
3,597,176	-				+1.7
3,597,176	-				-0.7
3,597,305	+				-0.5
3,597,306	-				-0.8
3,597,306	-				+1.0
3,597,306	-				+2.1
3,597,342	+				+3.0
3,597,343	-				-0.4
3,597,343	-				+1.2
3,597,343	-				-0.9
3,597,602	+		DDA3937_RS15695	0.33	-2.0
3,597,602	+		DDA3937_RS15695	0.33	-0.4
3,597,602	+		DDA3937_RS15695	0.33	+3.2
3,597,602	+		DDA3937_RS15695	0.33	-0.7
3,597,602	+		DDA3937_RS15695	0.33	+0.8
3,597,602	+		DDA3937_RS15695	0.33	-1.2
3,597,602	+		DDA3937_RS15695	0.33	-1.0
3,597,602	+		DDA3937_RS15695	0.33	-1.6
3,597,602	+		DDA3937_RS15695	0.33	-0.7
3,597,602	+		DDA3937_RS15695	0.33	-0.8
3,597,602	+		DDA3937_RS15695	0.33	-0.3
3,597,602	+		DDA3937_RS15695	0.33	-0.4
3,597,602	+		DDA3937_RS15695	0.33	-0.4
3,597,602	+		DDA3937_RS15695	0.33	+0.6
3,597,602	+		DDA3937_RS15695	0.33	-1.2
3,597,602	+		DDA3937_RS15695	0.33	-1.2
3,597,602	+		DDA3937_RS15695	0.33	-1.5
3,597,602	+		DDA3937_RS15695	0.33	+0.1
3,597,602	+		DDA3937_RS15695	0.33	-0.0
3,597,602	+				+0.4
3,597,602	+		DDA3937_RS15695	0.33	-1.4
3,597,602	+		DDA3937_RS15695	0.33	-0.8
3,597,603	-		DDA3937_RS15695	0.33	-0.8
3,597,603	-		DDA3937_RS15695	0.33	+0.8
3,597,603	-		DDA3937_RS15695	0.33	-0.4
3,597,603	-		DDA3937_RS15695	0.33	-0.4
3,597,603	-		DDA3937_RS15695	0.33	-0.9
3,597,603	-		DDA3937_RS15695	0.33	-0.0
3,597,603	-		DDA3937_RS15695	0.33	-0.2
3,597,603	-		DDA3937_RS15695	0.33	+0.6
3,597,603	-		DDA3937_RS15695	0.33	+1.1
3,597,603	-		DDA3937_RS15695	0.33	-1.2
3,597,603	-		DDA3937_RS15695	0.33	-0.3
3,597,603	-		DDA3937_RS15695	0.33	+0.4
3,597,603	-		DDA3937_RS15695	0.33	-0.4
3,597,603	-		DDA3937_RS15695	0.33	-0.9
3,597,603	-		DDA3937_RS15695	0.33	+1.4
3,597,603	-		DDA3937_RS15695	0.33	+0.4
3,597,603	-		DDA3937_RS15695	0.33	-0.7
3,597,603	-		DDA3937_RS15695	0.33	-1.5
3,597,604	+		DDA3937_RS15695	0.33	+0.4
3,597,604	+		DDA3937_RS15695	0.33	-0.1
3,597,605	-		DDA3937_RS15695	0.33	+0.6
3,597,658	+				-0.4
3,597,659	-		DDA3937_RS15695	0.40	+2.6
3,597,673	+		DDA3937_RS15695	0.41	-0.2
3,597,750	-		DDA3937_RS15695	0.50	-0.4
3,597,750	-		DDA3937_RS15695	0.50	-0.3
3,597,793	+		DDA3937_RS15695	0.56	-0.6
3,597,835	-		DDA3937_RS15695	0.61	-0.8
3,597,859	+		DDA3937_RS15695	0.63	-0.7
3,597,860	-		DDA3937_RS15695	0.63	-0.6
3,597,860	-		DDA3937_RS15695	0.63	-1.2
3,597,860	-		DDA3937_RS15695	0.63	+0.6
3,597,866	+		DDA3937_RS15695	0.64	-0.8
3,597,867	-		DDA3937_RS15695	0.64	-0.4
3,597,867	-		DDA3937_RS15695	0.64	+0.4
3,597,867	-		DDA3937_RS15695	0.64	-1.0
3,597,867	-		DDA3937_RS15695	0.64	-2.1
3,597,908	+		DDA3937_RS15695	0.69	+0.4
3,597,919	+		DDA3937_RS15695	0.70	-0.8
3,597,920	-		DDA3937_RS15695	0.71	+1.0
3,597,920	-		DDA3937_RS15695	0.71	-0.4
3,597,920	-		DDA3937_RS15695	0.71	-0.6
3,597,942	-		DDA3937_RS15695	0.73	-1.8
3,597,943	+		DDA3937_RS15695	0.73	-1.0
3,597,943	+		DDA3937_RS15695	0.73	-0.7
3,597,943	+		DDA3937_RS15695	0.73	-1.5
3,597,956	-		DDA3937_RS15695	0.75	-1.5
3,597,965	-		DDA3937_RS15695	0.76	+1.6
3,597,988	+		DDA3937_RS15695	0.79	-1.5
3,597,989	-		DDA3937_RS15695	0.79	-0.4
3,597,995	+		DDA3937_RS15695	0.79	+1.6
3,598,025	+		DDA3937_RS15695	0.83	-1.5
3,598,025	+		DDA3937_RS15695	0.83	+0.8
3,598,025	+		DDA3937_RS15695	0.83	-0.4
3,598,026	-		DDA3937_RS15695	0.83	+0.3
3,598,036	+		DDA3937_RS15695	0.84	-1.0
3,598,084	+				-0.0
3,598,084	+				+1.2
3,598,085	-				-0.1
3,598,085	-				-0.3
3,598,085	-				+0.2
3,598,085	-				-0.5
3,598,107	+				+4.1
3,598,107	+				+0.8
3,598,116	-				-1.6
3,598,166	+				-0.1
3,598,207	+				+0.8
3,598,207	+				+1.4
3,598,207	+				+1.0
3,598,246	+				-1.8
3,598,246	+				+0.4
3,598,246	+				-1.6
3,598,247	-				-2.2
3,598,332	-				-0.6
3,598,353	-		DDA3937_RS15700	0.11	+0.4
3,598,354	+		DDA3937_RS15700	0.11	+0.6
3,598,354	+		DDA3937_RS15700	0.11	-0.9
3,598,354	+		DDA3937_RS15700	0.11	-0.4
3,598,354	+		DDA3937_RS15700	0.11	-0.3
3,598,354	+		DDA3937_RS15700	0.11	-0.8
3,598,354	+		DDA3937_RS15700	0.11	-0.4
3,598,355	-		DDA3937_RS15700	0.11	-0.2
3,598,355	-		DDA3937_RS15700	0.11	-2.7
3,598,355	-		DDA3937_RS15700	0.11	-0.6
3,598,355	-		DDA3937_RS15700	0.11	-0.1
3,598,355	-		DDA3937_RS15700	0.11	-0.2
3,598,396	+		DDA3937_RS15700	0.14	-0.6
3,598,396	+		DDA3937_RS15700	0.14	-0.1
3,598,396	+		DDA3937_RS15700	0.14	-0.0
3,598,396	+		DDA3937_RS15700	0.14	+0.2
3,598,396	+		DDA3937_RS15700	0.14	+0.3
3,598,396	+		DDA3937_RS15700	0.14	+0.5
3,598,397	-		DDA3937_RS15700	0.14	+0.7
3,598,397	-		DDA3937_RS15700	0.14	+0.6
3,598,397	-		DDA3937_RS15700	0.14	-0.4
3,598,397	-		DDA3937_RS15700	0.14	-1.4
3,598,397	-		DDA3937_RS15700	0.14	-1.2
3,598,397	-		DDA3937_RS15700	0.14	-0.7
3,598,397	-		DDA3937_RS15700	0.14	+1.0
3,598,397	-		DDA3937_RS15700	0.14	+0.1
3,598,397	-		DDA3937_RS15700	0.14	-0.8
3,598,403	+		DDA3937_RS15700	0.15	-0.2
3,598,404	-		DDA3937_RS15700	0.15	+0.5
3,598,464	+		DDA3937_RS15700	0.19	+0.3
3,598,464	+		DDA3937_RS15700	0.19	-0.0
3,598,464	+		DDA3937_RS15700	0.19	-0.1
3,598,464	+		DDA3937_RS15700	0.19	+1.0
3,598,464	+		DDA3937_RS15700	0.19	-0.4
3,598,464	+		DDA3937_RS15700	0.19	-0.8
3,598,465	-		DDA3937_RS15700	0.19	+0.4
3,598,465	-		DDA3937_RS15700	0.19	-0.1
3,598,465	-		DDA3937_RS15700	0.19	-0.1
3,598,465	-		DDA3937_RS15700	0.19	+1.4
3,598,465	-		DDA3937_RS15700	0.19	+1.0
3,598,547	+		DDA3937_RS15700	0.24	+0.5
3,598,727	+		DDA3937_RS15700	0.36	-0.3
3,598,727	+		DDA3937_RS15700	0.36	-0.4
3,598,727	+				+2.7
3,598,727	+				+2.0
3,598,727	+		DDA3937_RS15700	0.36	+1.4
3,598,728	-		DDA3937_RS15700	0.36	+0.5
3,598,728	-		DDA3937_RS15700	0.36	-0.0
3,598,728	-		DDA3937_RS15700	0.36	-1.2
3,598,728	-		DDA3937_RS15700	0.36	+0.4
3,598,728	-		DDA3937_RS15700	0.36	+1.0
3,598,813	+				+2.7
3,598,904	-		DDA3937_RS15700	0.48	-0.4
3,598,904	-		DDA3937_RS15700	0.48	-0.8
3,598,904	-		DDA3937_RS15700	0.48	-0.3
3,598,904	-		DDA3937_RS15700	0.48	+0.4
3,598,904	-		DDA3937_RS15700	0.48	+1.2
3,598,904	-		DDA3937_RS15700	0.48	+0.1
3,598,919	+		DDA3937_RS15700	0.49	+1.1
3,598,922	-		DDA3937_RS15700	0.49	-1.2
3,598,922	-		DDA3937_RS15700	0.49	+2.0
3,598,962	-		DDA3937_RS15700	0.51	-0.2
3,598,979	-		DDA3937_RS15700	0.53	-0.4
3,599,024	+		DDA3937_RS15700	0.55	-0.2
3,599,024	+		DDA3937_RS15700	0.55	-1.3
3,599,024	+		DDA3937_RS15700	0.55	+0.6
3,599,024	+		DDA3937_RS15700	0.55	-0.8
3,599,024	+		DDA3937_RS15700	0.55	-1.4
3,599,024	+		DDA3937_RS15700	0.55	-0.8
3,599,026	+		DDA3937_RS15700	0.56	+0.6
3,599,026	+		DDA3937_RS15700	0.56	+0.7
3,599,027	-		DDA3937_RS15700	0.56	-0.2
3,599,027	-		DDA3937_RS15700	0.56	-0.3
3,599,027	-		DDA3937_RS15700	0.56	-2.0
3,599,027	-		DDA3937_RS15700	0.56	-0.9
3,599,027	-		DDA3937_RS15700	0.56	-1.0
3,599,027	-		DDA3937_RS15700	0.56	-0.4
3,599,031	-		DDA3937_RS15700	0.56	+0.6
3,599,168	+		DDA3937_RS15700	0.65	-0.7