Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14970

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,433,692	-		DDA3937_RS14965	0.27	-0.1
3,433,692	-		DDA3937_RS14965	0.27	-0.7
3,433,692	-		DDA3937_RS14965	0.27	-0.8
3,433,692	-		DDA3937_RS14965	0.27	-0.4
3,433,726	+		DDA3937_RS14965	0.29	-2.2
3,433,726	+		DDA3937_RS14965	0.29	-0.7
3,433,726	+		DDA3937_RS14965	0.29	+0.3
3,433,726	+				-0.7
3,433,726	+		DDA3937_RS14965	0.29	-0.5
3,433,727	-		DDA3937_RS14965	0.29	-0.4
3,433,727	-		DDA3937_RS14965	0.29	-0.4
3,433,727	-				+0.3
3,433,727	-		DDA3937_RS14965	0.29	+1.0
3,433,734	+		DDA3937_RS14965	0.30	-1.2
3,433,735	-		DDA3937_RS14965	0.30	+0.1
3,433,737	+		DDA3937_RS14965	0.30	+0.1
3,433,737	+		DDA3937_RS14965	0.30	-1.7
3,433,772	-		DDA3937_RS14965	0.33	+0.1
3,433,772	-		DDA3937_RS14965	0.33	-1.1
3,433,812	-		DDA3937_RS14965	0.36	+1.5
3,433,843	+		DDA3937_RS14965	0.39	-0.1
3,433,843	+		DDA3937_RS14965	0.39	-1.8
3,433,843	+				+0.3
3,433,844	-		DDA3937_RS14965	0.39	-0.5
3,433,930	+		DDA3937_RS14965	0.46	-0.4
3,433,965	-		DDA3937_RS14965	0.49	+1.5
3,434,172	+		DDA3937_RS14965	0.66	-0.9
3,434,184	+		DDA3937_RS14965	0.67	-2.5
3,434,215	+		DDA3937_RS14965	0.70	+0.1
3,434,401	+		DDA3937_RS14965	0.85	-0.1
3,434,433	+		DDA3937_RS14965	0.88	+0.6
3,434,433	+		DDA3937_RS14965	0.88	-0.5
3,434,433	+		DDA3937_RS14965	0.88	-0.1
3,434,455	+		DDA3937_RS14965	0.89	-1.5
3,434,455	+		DDA3937_RS14965	0.89	-2.0
3,434,455	+		DDA3937_RS14965	0.89	+0.9
3,434,455	+		DDA3937_RS14965	0.89	-0.4
3,434,456	-		DDA3937_RS14965	0.89	-0.8
3,434,457	+		DDA3937_RS14965	0.90	-0.8
3,434,457	+		DDA3937_RS14965	0.90	-1.2
3,434,457	+		DDA3937_RS14965	0.90	-1.5
3,434,457	+		DDA3937_RS14965	0.90	+0.5
3,434,457	+		DDA3937_RS14965	0.90	-1.2
3,434,457	+		DDA3937_RS14965	0.90	-0.8
3,434,457	+		DDA3937_RS14965	0.90	-0.6
3,434,457	+		DDA3937_RS14965	0.90	-1.3
3,434,458	-		DDA3937_RS14965	0.90	-0.9
3,434,458	-		DDA3937_RS14965	0.90	+1.2
3,434,458	-		DDA3937_RS14965	0.90	+1.2
3,434,458	-		DDA3937_RS14965	0.90	-0.9
3,434,458	-		DDA3937_RS14965	0.90	+0.1
3,434,524	+				-1.2
3,434,524	+				-0.8
3,434,536	+				+0.7
3,434,536	+				+0.1
3,434,536	+				-0.1
3,434,537	-				-1.0
3,434,537	-				-0.9
3,434,582	-				-1.6
3,434,594	+				-1.9
3,434,594	+				-1.4
3,434,594	+				-0.4
3,434,594	+				-0.5
3,434,594	+				-0.3
3,434,595	-				+0.1
3,434,724	+		DDA3937_RS14970	0.12	-0.3
3,434,724	+		DDA3937_RS14970	0.12	-0.2
3,434,724	+		DDA3937_RS14970	0.12	+1.5
3,434,724	+		DDA3937_RS14970	0.12	-1.3
3,434,724	+		DDA3937_RS14970	0.12	-1.5
3,434,724	+		DDA3937_RS14970	0.12	+1.9
3,434,725	-		DDA3937_RS14970	0.12	+0.2
3,434,725	-		DDA3937_RS14970	0.12	+0.3
3,434,725	-		DDA3937_RS14970	0.12	-0.6
3,434,725	-		DDA3937_RS14970	0.12	-1.0
3,434,725	-		DDA3937_RS14970	0.12	-1.0
3,434,725	-		DDA3937_RS14970	0.12	-1.2
3,434,728	+		DDA3937_RS14970	0.13	-0.4
3,434,756	-		DDA3937_RS14970	0.15	+1.3
3,434,907	+		DDA3937_RS14970	0.30	+0.3
3,434,956	+		DDA3937_RS14970	0.35	-1.0
3,434,956	+		DDA3937_RS14970	0.35	-0.9
3,435,036	+		DDA3937_RS14970	0.43	+1.1
3,435,054	-		DDA3937_RS14970	0.44	+3.5
3,435,097	+		DDA3937_RS14970	0.49	-0.7
3,435,148	+		DDA3937_RS14970	0.54	+0.0
3,435,149	-		DDA3937_RS14970	0.54	-0.1
3,435,263	+		DDA3937_RS14970	0.65	+0.4
3,435,264	-		DDA3937_RS14970	0.65	-0.4
3,435,333	+		DDA3937_RS14970	0.72	+1.1
3,435,414	+		DDA3937_RS14970	0.80	+0.9
3,435,432	+		DDA3937_RS14970	0.81	-0.2
3,435,433	-		DDA3937_RS14970	0.82	-0.4
3,435,433	-		DDA3937_RS14970	0.82	-0.9
3,435,535	+				+0.2
3,435,561	+				-0.3
3,435,562	-				-0.2
3,435,599	+				+0.8
3,435,600	-				-1.2
3,435,619	+				-0.8
3,435,619	+				-1.7
3,435,619	+				+2.3
3,435,620	-				-0.6
3,435,620	-				-0.8
3,435,624	-				+1.9
3,435,697	+				+0.4
3,435,753	+				+0.8
3,435,753	+				+1.8
3,435,754	-				-1.3
3,435,772	-				-1.5
3,435,772	-				-0.7
3,435,782	+				+0.5
3,435,783	-				-0.5
3,435,783	-				+0.5
3,435,783	-				+0.1
3,435,784	+				-0.7
3,435,786	+				-0.5
3,435,787	-				-0.5
3,435,915	-				+0.5
3,435,915	-				-1.8
3,435,969	+				+0.2
3,435,969	+				+0.5
3,435,969	+				+0.2
3,435,970	-				-1.9
3,435,976	-				-0.7
3,436,023	+				-0.5
3,436,024	-				-0.4
3,436,025	+				-0.3
3,436,026	-				-1.4
3,436,026	-				-1.2
3,436,035	+				+0.6
3,436,035	+				-0.9
3,436,035	+				-0.8
3,436,078	-				-0.8
3,436,233	+		DDA3937_RS14975	0.14	-0.2
3,436,233	+		DDA3937_RS14975	0.14	-0.8
3,436,233	+		DDA3937_RS14975	0.14	-1.7
3,436,233	+		DDA3937_RS14975	0.14	+3.5
3,436,233	+		DDA3937_RS14975	0.14	-0.7
3,436,234	-		DDA3937_RS14975	0.14	+0.1
3,436,237	+		DDA3937_RS14975	0.15	-0.6
3,436,238	-		DDA3937_RS14975	0.15	-0.7
3,436,238	-		DDA3937_RS14975	0.15	+0.0
3,436,249	+		DDA3937_RS14975	0.15	+0.9
3,436,249	+		DDA3937_RS14975	0.15	-1.4
3,436,250	-		DDA3937_RS14975	0.15	-0.9
3,436,250	-		DDA3937_RS14975	0.15	-0.6
3,436,250	-		DDA3937_RS14975	0.15	-1.2
3,436,250	-		DDA3937_RS14975	0.15	-0.9
3,436,250	-		DDA3937_RS14975	0.15	-0.6
3,436,261	-		DDA3937_RS14975	0.16	+0.2
3,436,324	-		DDA3937_RS14975	0.21	-0.4
3,436,324	-		DDA3937_RS14975	0.21	+0.2
3,436,324	-		DDA3937_RS14975	0.21	+1.9
3,436,324	-		DDA3937_RS14975	0.21	-1.4
3,436,326	+		DDA3937_RS14975	0.21	-1.4
3,436,326	+		DDA3937_RS14975	0.21	-0.2
3,436,350	+				+2.5
3,436,350	+		DDA3937_RS14975	0.23	-0.2
3,436,351	-		DDA3937_RS14975	0.23	+1.1
3,436,351	-		DDA3937_RS14975	0.23	-0.7
3,436,378	+		DDA3937_RS14975	0.24	-0.6
3,436,379	-		DDA3937_RS14975	0.25	-0.7
3,436,379	-		DDA3937_RS14975	0.25	-1.0
3,436,379	-		DDA3937_RS14975	0.25	-1.8
3,436,486	+		DDA3937_RS14975	0.32	-1.4
3,436,513	-		DDA3937_RS14975	0.34	+0.3
3,436,607	+		DDA3937_RS14975	0.41	-0.9
3,436,607	+		DDA3937_RS14975	0.41	-0.1
3,436,608	-		DDA3937_RS14975	0.41	-0.8
3,436,608	-		DDA3937_RS14975	0.41	-1.4
3,436,610	+		DDA3937_RS14975	0.41	-1.5