Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14760

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,388,182	+		DDA3937_RS14750	0.78	-1.4
3,388,334	-				-0.8
3,388,392	+				-0.8
3,388,416	+				-0.0
3,388,416	+				-0.3
3,388,417	-				-0.3
3,388,524	+				+0.9
3,388,556	-				-0.1
3,388,556	-				+0.1
3,388,739	+		DDA3937_RS14755	0.38	-0.6
3,388,740	-		DDA3937_RS14755	0.38	-1.4
3,388,945	+		DDA3937_RS14755	0.80	-0.7
3,388,945	+		DDA3937_RS14755	0.80	+0.3
3,388,945	+		DDA3937_RS14755	0.80	-1.3
3,388,946	-		DDA3937_RS14755	0.80	-1.0
3,388,946	-		DDA3937_RS14755	0.80	-0.6
3,388,946	-		DDA3937_RS14755	0.80	-1.5
3,388,946	-		DDA3937_RS14755	0.80	+0.6
3,388,946	-		DDA3937_RS14755	0.80	+0.1
3,388,946	-		DDA3937_RS14755	0.80	-0.2
3,388,946	-		DDA3937_RS14755	0.80	-0.9
3,388,948	+		DDA3937_RS14755	0.81	+0.1
3,388,948	+		DDA3937_RS14755	0.81	+1.0
3,388,948	+		DDA3937_RS14755	0.81	-1.8
3,388,948	+		DDA3937_RS14755	0.81	-0.7
3,388,948	+		DDA3937_RS14755	0.81	-0.7
3,388,948	+		DDA3937_RS14755	0.81	+0.7
3,388,948	+		DDA3937_RS14755	0.81	-1.3
3,388,948	+		DDA3937_RS14755	0.81	+0.4
3,388,948	+		DDA3937_RS14755	0.81	-2.1
3,388,948	+		DDA3937_RS14755	0.81	-1.6
3,388,948	+		DDA3937_RS14755	0.81	+1.3
3,388,949	-		DDA3937_RS14755	0.81	+0.0
3,388,949	-		DDA3937_RS14755	0.81	-1.1
3,388,949	-		DDA3937_RS14755	0.81	+0.8
3,388,966	-		DDA3937_RS14755	0.84	-1.6
3,388,966	-		DDA3937_RS14755	0.84	-0.6
3,388,966	-		DDA3937_RS14755	0.84	+0.8
3,389,013	+				+0.9
3,389,013	+				-0.9
3,389,014	-				+0.9
3,389,014	-				-1.1
3,389,014	-				-1.2
3,389,060	+				-0.4
3,389,061	-				+0.1
3,389,118	+				-0.9
3,389,118	+				-1.5
3,389,119	-				+0.6
3,389,119	-				+2.2
3,389,158	-				+0.0
3,389,158	-				-1.4
3,389,158	-				+0.2
3,389,377	-		DDA3937_RS14760	0.28	-0.9
3,389,377	-		DDA3937_RS14760	0.28	-0.2
3,389,377	-		DDA3937_RS14760	0.28	-0.0
3,389,377	-		DDA3937_RS14760	0.28	-0.1
3,389,403	+		DDA3937_RS14760	0.30	-0.3
3,389,404	-		DDA3937_RS14760	0.30	+0.1
3,389,418	+		DDA3937_RS14760	0.32	-0.1
3,389,557	+		DDA3937_RS14760	0.43	-1.4
3,389,557	+		DDA3937_RS14760	0.43	-0.9
3,389,557	+		DDA3937_RS14760	0.43	+0.6
3,389,558	-		DDA3937_RS14760	0.43	-1.0
3,389,558	-		DDA3937_RS14760	0.43	-1.4
3,389,558	-		DDA3937_RS14760	0.43	-1.7
3,389,558	-		DDA3937_RS14760	0.43	+0.9
3,389,558	-		DDA3937_RS14760	0.43	-0.1
3,389,558	-		DDA3937_RS14760	0.43	-1.6
3,389,558	-		DDA3937_RS14760	0.43	-0.7
3,389,558	-		DDA3937_RS14760	0.43	+0.1
3,389,558	-		DDA3937_RS14760	0.43	+0.7
3,389,561	+		DDA3937_RS14760	0.43	+0.3
3,389,562	-		DDA3937_RS14760	0.43	-0.2
3,389,647	+		DDA3937_RS14760	0.51	+0.1
3,389,648	-		DDA3937_RS14760	0.51	-0.9
3,389,648	-		DDA3937_RS14760	0.51	-0.4
3,389,648	-		DDA3937_RS14760	0.51	-0.6
3,389,649	+		DDA3937_RS14760	0.51	-0.2
3,389,649	+		DDA3937_RS14760	0.51	-0.3
3,389,649	+		DDA3937_RS14760	0.51	-0.5
3,389,649	+		DDA3937_RS14760	0.51	+0.2
3,389,649	+		DDA3937_RS14760	0.51	+0.4
3,389,649	+		DDA3937_RS14760	0.51	+0.9
3,389,650	-		DDA3937_RS14760	0.51	-1.0
3,389,650	-		DDA3937_RS14760	0.51	+0.2
3,389,650	-		DDA3937_RS14760	0.51	-0.4
3,389,650	-		DDA3937_RS14760	0.51	+0.1
3,389,697	+		DDA3937_RS14760	0.55	-0.1
3,389,697	+		DDA3937_RS14760	0.55	-2.4
3,389,698	-		DDA3937_RS14760	0.55	+0.9
3,389,698	-		DDA3937_RS14760	0.55	+2.6
3,389,732	-		DDA3937_RS14760	0.58	-1.1
3,389,735	+		DDA3937_RS14760	0.58	+0.9
3,389,744	+		DDA3937_RS14760	0.59	-0.2
3,389,745	-		DDA3937_RS14760	0.59	-0.7
3,389,804	+		DDA3937_RS14760	0.64	+0.9
3,389,804	+		DDA3937_RS14760	0.64	+2.1
3,389,804	+		DDA3937_RS14760	0.64	-0.9
3,389,805	-		DDA3937_RS14760	0.64	-1.1
3,389,805	-		DDA3937_RS14760	0.64	-0.7
3,389,883	-		DDA3937_RS14760	0.70	-1.5
3,390,255	+				-0.1
3,390,255	+				-2.2
3,390,255	+				-0.9
3,390,255	+				+0.4
3,390,255	+				+0.4
3,390,255	+				-1.2
3,390,255	+				-0.7
3,390,255	+				-0.8
3,390,255	+				-0.2
3,390,255	+				-0.9
3,390,255	+				-0.7
3,390,256	-				-0.6
3,390,256	-				+1.9
3,390,256	-				+0.6
3,390,256	-				-1.3
3,390,256	-				-0.1
3,390,256	-				-1.4
3,390,256	-				-1.1
3,390,256	-				-0.9
3,390,256	-				+0.1
3,390,256	-				-1.9
3,390,266	+				-1.7
3,390,277	+				-0.4
3,390,277	+				+0.0
3,390,277	+				-0.4
3,390,277	+				-0.7
3,390,277	+				+0.3
3,390,277	+				-0.9
3,390,277	+				-1.0
3,390,278	-				-3.6
3,390,278	-				+0.1
3,390,278	-				-1.0
3,390,320	+				-0.3
3,390,321	-				-1.1
3,390,343	+		DDA3937_RS14765	0.10	+0.3
3,390,343	+		DDA3937_RS14765	0.10	+0.3
3,390,435	+		DDA3937_RS14765	0.19	-1.4
3,390,444	+		DDA3937_RS14765	0.20	+0.3
3,390,444	+		DDA3937_RS14765	0.20	-0.4
3,390,444	+				-0.1
3,390,445	-		DDA3937_RS14765	0.20	-0.3
3,390,445	-		DDA3937_RS14765	0.20	+1.3
3,390,602	+		DDA3937_RS14765	0.35	+0.2
3,390,602	+		DDA3937_RS14765	0.35	-1.1
3,390,603	-		DDA3937_RS14765	0.35	-1.6
3,390,603	-		DDA3937_RS14765	0.35	-2.0
3,390,603	-		DDA3937_RS14765	0.35	+0.6
3,390,603	-		DDA3937_RS14765	0.35	-0.4
3,390,603	-		DDA3937_RS14765	0.35	-0.4
3,390,603	-		DDA3937_RS14765	0.35	+1.3
3,390,701	+		DDA3937_RS14765	0.44	-2.8
3,390,701	+		DDA3937_RS14765	0.44	-2.2
3,390,701	+		DDA3937_RS14765	0.44	+1.2
3,390,701	+		DDA3937_RS14765	0.44	-0.7
3,390,701	+		DDA3937_RS14765	0.44	+0.2
3,390,701	+		DDA3937_RS14765	0.44	+1.6
3,390,701	+		DDA3937_RS14765	0.44	-0.1
3,390,701	+		DDA3937_RS14765	0.44	+0.3
3,390,701	+		DDA3937_RS14765	0.44	+0.5
3,390,701	+		DDA3937_RS14765	0.44	-1.6
3,390,702	-		DDA3937_RS14765	0.44	+0.6
3,390,702	-		DDA3937_RS14765	0.44	-0.7
3,390,702	-		DDA3937_RS14765	0.44	-1.1
3,390,702	-		DDA3937_RS14765	0.44	-0.2
3,390,702	-		DDA3937_RS14765	0.44	+1.6
3,390,702	-		DDA3937_RS14765	0.44	-0.4
3,390,702	-		DDA3937_RS14765	0.44	+0.1
3,390,702	-		DDA3937_RS14765	0.44	-1.9
3,390,702	-		DDA3937_RS14765	0.44	-0.7
3,390,702	-		DDA3937_RS14765	0.44	+0.9
3,390,702	-		DDA3937_RS14765	0.44	-0.5
3,390,702	-		DDA3937_RS14765	0.44	-1.0
3,390,702	-		DDA3937_RS14765	0.44	-1.1
3,390,702	-		DDA3937_RS14765	0.44	-0.4
3,390,702	-		DDA3937_RS14765	0.44	-1.3
3,390,738	+				+0.9
3,390,827	-		DDA3937_RS14765	0.56	+0.2
3,390,897	+		DDA3937_RS14765	0.63	+1.2
3,390,898	-		DDA3937_RS14765	0.63	-0.7
3,390,900	+				+0.3
3,390,901	-		DDA3937_RS14765	0.63	+2.9
3,390,901	-		DDA3937_RS14765	0.63	-0.4
3,390,924	+		DDA3937_RS14765	0.65	-0.2
3,390,925	-		DDA3937_RS14765	0.65	-1.7
3,390,930	+		DDA3937_RS14765	0.66	+0.7
3,390,930	+		DDA3937_RS14765	0.66	-0.1
3,390,931	-		DDA3937_RS14765	0.66	+0.4
3,390,998	-		DDA3937_RS14765	0.72	+0.8
3,391,105	+		DDA3937_RS14765	0.83	+0.3
3,391,105	+		DDA3937_RS14765	0.83	+2.6
3,391,140	-		DDA3937_RS14765	0.86	-0.1
3,391,207	-				-0.9
3,391,209	+				-1.8
3,391,209	+				+0.9
3,391,210	-				-0.6