Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14650

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,354,246	-		DDA3937_RS14645	0.55	+0.3
3,354,246	-		DDA3937_RS14645	0.55	+0.1
3,354,261	+		DDA3937_RS14645	0.56	-1.6
3,354,261	+		DDA3937_RS14645	0.56	+0.0
3,354,262	-		DDA3937_RS14645	0.56	-0.4
3,354,453	-		DDA3937_RS14645	0.66	+1.2
3,354,476	+		DDA3937_RS14645	0.67	+0.1
3,354,477	-		DDA3937_RS14645	0.67	-0.1
3,354,477	-		DDA3937_RS14645	0.67	-0.9
3,354,492	+		DDA3937_RS14645	0.68	-0.5
3,354,492	+		DDA3937_RS14645	0.68	-0.5
3,354,492	+		DDA3937_RS14645	0.68	-0.4
3,354,492	+		DDA3937_RS14645	0.68	+2.9
3,354,493	-		DDA3937_RS14645	0.68	-0.0
3,354,534	+		DDA3937_RS14645	0.70	+0.3
3,354,534	+		DDA3937_RS14645	0.70	-1.5
3,354,585	+		DDA3937_RS14645	0.73	-1.6
3,354,585	+		DDA3937_RS14645	0.73	+0.0
3,354,586	-		DDA3937_RS14645	0.73	+0.4
3,354,587	+		DDA3937_RS14645	0.73	-0.1
3,354,587	+		DDA3937_RS14645	0.73	-0.5
3,354,587	+		DDA3937_RS14645	0.73	-0.8
3,354,587	+		DDA3937_RS14645	0.73	+0.2
3,354,587	+		DDA3937_RS14645	0.73	+0.6
3,354,587	+		DDA3937_RS14645	0.73	-0.6
3,354,587	+		DDA3937_RS14645	0.73	-0.1
3,354,587	+		DDA3937_RS14645	0.73	-1.3
3,354,588	-		DDA3937_RS14645	0.73	-2.5
3,354,588	-		DDA3937_RS14645	0.73	-0.7
3,354,588	-		DDA3937_RS14645	0.73	-0.3
3,354,588	-		DDA3937_RS14645	0.73	-0.5
3,354,588	-		DDA3937_RS14645	0.73	-0.5
3,354,588	-		DDA3937_RS14645	0.73	-0.3
3,354,588	-		DDA3937_RS14645	0.73	-0.5
3,354,588	-		DDA3937_RS14645	0.73	+0.0
3,354,588	-				+0.3
3,354,588	-		DDA3937_RS14645	0.73	-0.8
3,354,588	-		DDA3937_RS14645	0.73	-2.1
3,354,588	-		DDA3937_RS14645	0.73	-1.1
3,354,588	-		DDA3937_RS14645	0.73	+0.3
3,354,588	-		DDA3937_RS14645	0.73	-0.3
3,354,588	-		DDA3937_RS14645	0.73	-2.4
3,354,806	+		DDA3937_RS14645	0.85	-1.1
3,354,806	+		DDA3937_RS14645	0.85	+0.1
3,354,806	+		DDA3937_RS14645	0.85	+1.7
3,354,836	+		DDA3937_RS14645	0.86	-1.3
3,354,836	+		DDA3937_RS14645	0.86	-0.5
3,354,836	+		DDA3937_RS14645	0.86	+2.4
3,354,836	+		DDA3937_RS14645	0.86	+0.9
3,354,836	+		DDA3937_RS14645	0.86	-1.9
3,354,837	-		DDA3937_RS14645	0.86	-0.0
3,354,837	-		DDA3937_RS14645	0.86	-0.5
3,354,837	-		DDA3937_RS14645	0.86	-1.0
3,354,886	+		DDA3937_RS14645	0.89	-0.4
3,354,886	+		DDA3937_RS14645	0.89	-0.5
3,354,887	-		DDA3937_RS14645	0.89	+0.9
3,354,887	-		DDA3937_RS14645	0.89	-0.2
3,354,887	-		DDA3937_RS14645	0.89	-0.3
3,354,887	-		DDA3937_RS14645	0.89	-0.3
3,354,887	-		DDA3937_RS14645	0.89	-2.2
3,355,036	+				-0.3
3,355,037	-				-1.2
3,355,084	+				-0.7
3,355,084	+				-0.3
3,355,085	-				-0.1
3,355,085	-				-1.1
3,355,085	-				+0.9
3,355,107	+				-0.1
3,355,108	-				+1.0
3,355,108	-				-0.7
3,355,121	-				-1.4
3,355,121	-				-0.6
3,355,160	+				-0.1
3,355,161	-				-0.5
3,355,165	+				+0.0
3,355,165	+				-0.5
3,355,166	-				+1.4
3,355,166	-				+0.9
3,355,176	+				-0.7
3,355,223	-				+1.1
3,355,336	+				-2.5
3,355,337	-				+0.5
3,355,337	-				-1.4
3,355,449	-		DDA3937_RS14650	0.11	+0.1
3,355,449	-		DDA3937_RS14650	0.11	+0.3
3,355,567	+		DDA3937_RS14650	0.18	+0.5
3,355,600	+		DDA3937_RS14650	0.20	-0.0
3,355,613	-		DDA3937_RS14650	0.20	-0.9
3,355,756	+		DDA3937_RS14650	0.28	-1.8
3,355,756	+		DDA3937_RS14650	0.28	+0.4
3,355,756	+		DDA3937_RS14650	0.28	+0.3
3,355,757	-		DDA3937_RS14650	0.28	-0.9
3,355,766	-		DDA3937_RS14650	0.29	+1.2
3,355,766	-		DDA3937_RS14650	0.29	+0.1
3,355,768	+		DDA3937_RS14650	0.29	-0.7
3,355,768	+		DDA3937_RS14650	0.29	-0.9
3,355,768	+		DDA3937_RS14650	0.29	+1.4
3,355,768	+		DDA3937_RS14650	0.29	-1.4
3,355,768	+		DDA3937_RS14650	0.29	-1.0
3,355,768	+		DDA3937_RS14650	0.29	-0.1
3,355,769	-		DDA3937_RS14650	0.29	-0.5
3,355,825	+		DDA3937_RS14650	0.32	-0.5
3,355,826	-		DDA3937_RS14650	0.32	+0.1
3,356,012	+		DDA3937_RS14650	0.42	+0.5
3,356,084	+		DDA3937_RS14650	0.46	+0.7
3,356,084	+		DDA3937_RS14650	0.46	+0.4
3,356,084	+		DDA3937_RS14650	0.46	-0.9
3,356,084	+		DDA3937_RS14650	0.46	+1.5
3,356,085	-		DDA3937_RS14650	0.46	+0.4
3,356,085	-		DDA3937_RS14650	0.46	-0.3
3,356,085	-		DDA3937_RS14650	0.46	-1.7
3,356,086	+		DDA3937_RS14650	0.46	+1.3
3,356,087	-		DDA3937_RS14650	0.46	-0.5
3,356,224	+		DDA3937_RS14650	0.53	-0.1
3,356,224	+		DDA3937_RS14650	0.53	-0.1
3,356,225	-		DDA3937_RS14650	0.53	-1.3
3,356,225	-		DDA3937_RS14650	0.53	-1.7
3,356,228	+		DDA3937_RS14650	0.53	-0.1
3,356,229	-		DDA3937_RS14650	0.53	-0.1
3,356,229	-		DDA3937_RS14650	0.53	-0.3
3,356,236	+		DDA3937_RS14650	0.54	-2.2
3,356,236	+		DDA3937_RS14650	0.54	+2.9
3,356,236	+		DDA3937_RS14650	0.54	-0.2
3,356,237	-		DDA3937_RS14650	0.54	-0.8
3,356,270	+		DDA3937_RS14650	0.56	-0.5
3,356,272	+		DDA3937_RS14650	0.56	+1.7
3,356,272	+		DDA3937_RS14650	0.56	+0.3
3,356,273	-		DDA3937_RS14650	0.56	+0.1
3,356,273	-		DDA3937_RS14650	0.56	+0.7
3,356,288	+		DDA3937_RS14650	0.57	-0.3
3,356,289	-		DDA3937_RS14650	0.57	+0.4
3,356,289	-		DDA3937_RS14650	0.57	-0.8
3,356,289	-		DDA3937_RS14650	0.57	+1.2
3,356,289	-		DDA3937_RS14650	0.57	-0.9
3,356,435	-		DDA3937_RS14650	0.65	-0.2
3,356,479	+		DDA3937_RS14650	0.67	-1.7
3,356,480	-		DDA3937_RS14650	0.67	+0.5
3,356,504	-		DDA3937_RS14650	0.68	+0.1
3,356,516	-		DDA3937_RS14650	0.69	-0.0
3,356,586	-		DDA3937_RS14650	0.73	+0.7
3,356,586	-		DDA3937_RS14650	0.73	-0.1
3,356,778	-		DDA3937_RS14650	0.83	-0.1
3,356,792	+		DDA3937_RS14650	0.84	-0.3
3,356,793	-		DDA3937_RS14650	0.84	+0.4
3,356,794	+		DDA3937_RS14650	0.84	-2.4
3,356,794	+		DDA3937_RS14650	0.84	-0.3
3,356,794	+		DDA3937_RS14650	0.84	-0.3
3,356,795	-		DDA3937_RS14650	0.84	-2.2
3,356,795	-		DDA3937_RS14650	0.84	-1.2
3,356,815	+		DDA3937_RS14650	0.85	+1.0
3,356,815	+		DDA3937_RS14650	0.85	+0.3
3,356,816	-		DDA3937_RS14650	0.85	+0.2
3,356,909	+				-0.9
3,356,909	+				+0.1
3,356,910	-				+0.2
3,356,910	-				-1.5
3,356,910	-				-0.7
3,356,912	+				-0.5
3,356,912	+				+0.2
3,356,913	-				+1.4
3,356,913	-				-1.7
3,356,944	+				-0.6
3,356,944	+				+1.4
3,356,945	-				-0.7
3,357,013	+				-1.7
3,357,071	+				+0.0
3,357,071	+				+1.1
3,357,072	-				+0.2
3,357,072	-				-0.3
3,357,082	-				-0.5
3,357,114	+				-0.0
3,357,114	+				+0.0
3,357,114	+				-0.5
3,357,115	-				-0.5
3,357,119	-				+0.8
3,357,120	+				+0.3
3,357,120	+				+0.5
3,357,120	+				-0.9
3,357,120	+				+0.4
3,357,121	-				-0.7
3,357,121	-				-2.7
3,357,121	-				-1.6
3,357,121	-				-0.5
3,357,124	+				+1.9
3,357,124	+				-0.5
3,357,124	+				+3.4
3,357,219	+				-0.9
3,357,219	+				-0.8
3,357,251	-				-0.5
3,357,253	+				-0.2
3,357,332	+				+0.7
3,357,332	+				+1.2
3,357,359	-				-2.2
3,357,361	+				-0.5
3,357,361	+				-0.6
3,357,486	-				+1.1
3,357,499	-				-1.2
3,357,504	+				-0.0
3,357,504	+				+0.1
3,357,504	+				-1.5
3,357,505	-				-1.4
3,357,505	-				-2.5
3,357,505	-				-2.8
3,357,505	-				-1.3
3,357,539	+				-1.4
3,357,564	+				-0.6
3,357,564	+				-0.9
3,357,565	-				-1.0
3,357,684	-		DDA3937_RS14655	0.17	-0.7
3,357,739	-		DDA3937_RS14655	0.22	-1.6
3,357,813	+		DDA3937_RS14655	0.29	-1.3
3,357,813	+		DDA3937_RS14655	0.29	-0.3
3,357,889	+		DDA3937_RS14655	0.36	-1.3
3,357,889	+		DDA3937_RS14655	0.36	-0.8
3,357,889	+		DDA3937_RS14655	0.36	-2.5
3,357,890	-		DDA3937_RS14655	0.36	-1.6
3,357,890	-		DDA3937_RS14655	0.36	-3.0
3,357,945	+		DDA3937_RS14655	0.42	-1.6
3,357,945	+		DDA3937_RS14655	0.42	-1.4
3,357,945	+		DDA3937_RS14655	0.42	+0.6
3,357,982	+		DDA3937_RS14655	0.45	-1.1
3,357,983	-		DDA3937_RS14655	0.45	-0.8
3,357,983	-		DDA3937_RS14655	0.45	-0.1
3,358,033	-		DDA3937_RS14655	0.50	-1.3
3,358,057	+		DDA3937_RS14655	0.52	-1.8
3,358,057	+		DDA3937_RS14655	0.52	-2.2
3,358,057	+		DDA3937_RS14655	0.52	-1.5
3,358,057	+		DDA3937_RS14655	0.52	+0.3
3,358,058	-		DDA3937_RS14655	0.52	+0.3