Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14620

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,345,933	-		DDA3937_RS14615	0.38	+0.2
3,346,060	+				+0.9
3,346,061	-				+0.9
3,346,309	+		DDA3937_RS14615	0.67	-1.0
3,346,309	+		DDA3937_RS14615	0.67	-1.7
3,346,309	+		DDA3937_RS14615	0.67	-1.3
3,346,319	+		DDA3937_RS14615	0.68	-0.3
3,346,433	+				+0.3
3,346,434	-		DDA3937_RS14615	0.77	+2.8
3,346,434	-		DDA3937_RS14615	0.77	+0.0
3,346,434	-		DDA3937_RS14615	0.77	+0.6
3,346,436	+		DDA3937_RS14615	0.77	-0.5
3,346,437	-		DDA3937_RS14615	0.77	-1.0
3,346,437	-		DDA3937_RS14615	0.77	+0.3
3,346,437	-		DDA3937_RS14615	0.77	+0.3
3,346,437	-		DDA3937_RS14615	0.77	+0.3
3,346,437	-		DDA3937_RS14615	0.77	+0.0
3,346,439	+				+1.9
3,346,440	-		DDA3937_RS14615	0.78	-0.5
3,346,440	-		DDA3937_RS14615	0.78	-0.5
3,346,440	-		DDA3937_RS14615	0.78	+0.4
3,346,440	-		DDA3937_RS14615	0.78	+1.5
3,346,560	-		DDA3937_RS14615	0.87	-1.1
3,346,560	-		DDA3937_RS14615	0.87	-0.4
3,346,560	-		DDA3937_RS14615	0.87	-1.3
3,346,560	-		DDA3937_RS14615	0.87	-1.3
3,346,560	-		DDA3937_RS14615	0.87	+0.5
3,346,601	+				-0.1
3,346,601	+				-1.1
3,346,601	+				-1.0
3,346,601	+				+1.3
3,346,601	+				-0.1
3,346,601	+				+1.9
3,346,602	-				-0.6
3,346,603	+				-1.6
3,346,603	+				+1.1
3,346,603	+				-0.1
3,346,603	+				+1.3
3,346,603	+				+0.3
3,346,604	-				-1.1
3,346,604	-				-1.0
3,346,604	-				+0.3
3,346,604	-				+0.5
3,346,604	-				-2.1
3,346,662	-				+0.4
3,346,669	+				-1.0
3,346,670	-				-0.4
3,346,670	-				+0.3
3,346,695	-				-0.5
3,346,712	+				+0.9
3,346,713	-				-0.5
3,346,736	-				-0.1
3,346,736	-				-1.3
3,346,748	-				-0.7
3,346,796	+				-0.6
3,346,831	+				+1.9
3,346,831	+				-0.8
3,346,831	+				-1.0
3,346,832	-				-1.1
3,346,851	-				-1.3
3,346,859	-				-1.1
3,346,909	+				+0.0
3,346,910	-				+0.1
3,346,910	-				-1.3
3,347,180	-		DDA3937_RS14620	0.24	-1.5
3,347,180	-				+0.3
3,347,282	+		DDA3937_RS14620	0.30	-0.3
3,347,282	+		DDA3937_RS14620	0.30	-1.8
3,347,283	-		DDA3937_RS14620	0.30	+1.1
3,347,283	-		DDA3937_RS14620	0.30	-2.3
3,347,283	-		DDA3937_RS14620	0.30	+2.9
3,347,396	+		DDA3937_RS14620	0.37	-0.6
3,347,448	-		DDA3937_RS14620	0.41	-1.0
3,347,452	+		DDA3937_RS14620	0.41	-0.6
3,347,453	-		DDA3937_RS14620	0.41	+1.1
3,347,454	+		DDA3937_RS14620	0.41	+0.5
3,347,454	+		DDA3937_RS14620	0.41	-1.0
3,347,455	-		DDA3937_RS14620	0.41	-2.5
3,347,455	-		DDA3937_RS14620	0.41	+0.5
3,347,476	-		DDA3937_RS14620	0.42	-1.4
3,347,476	-		DDA3937_RS14620	0.42	-2.0
3,347,530	+		DDA3937_RS14620	0.46	-1.2
3,347,530	+		DDA3937_RS14620	0.46	+0.5
3,347,530	+		DDA3937_RS14620	0.46	+1.9
3,347,530	+		DDA3937_RS14620	0.46	-1.0
3,347,531	-		DDA3937_RS14620	0.46	+0.2
3,347,531	-		DDA3937_RS14620	0.46	+0.4
3,347,550	-		DDA3937_RS14620	0.47	+0.4
3,347,606	+		DDA3937_RS14620	0.51	-1.1
3,347,606	+		DDA3937_RS14620	0.51	-0.1
3,347,607	-		DDA3937_RS14620	0.51	-1.2
3,347,771	-		DDA3937_RS14620	0.61	-1.0
3,347,775	-		DDA3937_RS14620	0.61	-0.6
3,347,795	+		DDA3937_RS14620	0.63	-1.7
3,347,796	-		DDA3937_RS14620	0.63	-0.3
3,347,938	+		DDA3937_RS14620	0.72	-0.2
3,347,938	+		DDA3937_RS14620	0.72	+0.7
3,347,938	+		DDA3937_RS14620	0.72	-0.6
3,347,938	+		DDA3937_RS14620	0.72	-1.5
3,347,939	-		DDA3937_RS14620	0.72	-0.8
3,347,939	-		DDA3937_RS14620	0.72	-1.8
3,347,939	-		DDA3937_RS14620	0.72	-0.1
3,347,984	+		DDA3937_RS14620	0.75	-0.3
3,347,985	-		DDA3937_RS14620	0.75	+1.1
3,347,985	-		DDA3937_RS14620	0.75	-1.0
3,348,121	+		DDA3937_RS14620	0.83	-0.2
3,348,122	-		DDA3937_RS14620	0.84	+0.9
3,348,247	+				-1.0
3,348,247	+				-0.8
3,348,247	+				-1.5
3,348,247	+				-1.6
3,348,248	-				-1.1
3,348,248	-				-0.0
3,348,248	-				+1.6
3,348,339	+				+0.3
3,348,370	-				+2.7
3,348,380	+				-1.1
3,348,384	+				-0.3
3,348,384	+				-0.6
3,348,384	+				-0.3
3,348,384	+				-0.1
3,348,385	-				-1.7
3,348,385	-				+1.5
3,348,385	-				+3.2
3,348,385	-				-1.1
3,348,394	+				+0.4
3,348,394	+				+0.5
3,348,394	+				-0.7
3,348,448	+				-0.7
3,348,448	+				+1.6
3,348,492	+				-0.2
3,348,492	+				+0.5
3,348,493	-				-0.7
3,348,494	+				-1.6
3,348,494	+				+0.1
3,348,494	+				-0.6
3,348,495	-				-1.1
3,348,495	-				-0.4
3,348,531	+				-0.8
3,348,531	+				-1.0
3,348,532	-				-1.2
3,348,532	-				-1.6
3,348,562	+				-2.3
3,348,562	+				+0.4
3,348,563	-				-1.5
3,348,563	-				-0.6
3,348,581	-				-0.3
3,348,581	-				+0.4
3,348,586	+				+0.3
3,348,587	-				-1.6
3,348,587	-				+0.0
3,348,587	-				-0.5
3,348,587	-				-2.0
3,348,587	-				-1.3
3,348,643	+				+0.6
3,348,647	+				-0.7
3,348,647	+				+1.3
3,348,648	-				-0.7
3,348,667	-				-2.1
3,348,671	-				-0.1
3,348,675	-				+0.6
3,348,695	+				-0.2
3,348,695	+				+1.5
3,348,695	+				-0.5
3,348,696	-				-1.7
3,348,696	-				+0.3
3,348,696	-				+0.4
3,348,696	-				-0.1
3,348,696	-				-2.7
3,348,697	+				-1.7
3,348,742	+				-1.0
3,348,796	-				-1.6
3,348,799	+				+0.5
3,348,800	-				-0.8
3,348,800	-				+0.1
3,348,800	-				-0.4
3,348,868	+				-0.6
3,348,868	+				+0.5
3,348,868	+				-0.1
3,348,869	-				-1.4
3,348,869	-				+0.0
3,348,872	+				-1.0
3,348,872	+				-0.6
3,348,873	-				-0.1
3,348,907	+		DDA3937_RS14625	0.14	-1.6
3,348,908	-		DDA3937_RS14625	0.14	-1.0
3,348,908	-		DDA3937_RS14625	0.14	-0.5
3,348,929	-		DDA3937_RS14625	0.17	+0.3
3,349,033	+		DDA3937_RS14625	0.31	-0.3
3,349,034	-		DDA3937_RS14625	0.31	-0.7
3,349,118	-		DDA3937_RS14625	0.42	+0.3
3,349,138	+				+1.9
3,349,139	-		DDA3937_RS14625	0.45	+0.1
3,349,238	+		DDA3937_RS14625	0.58	+1.3
3,349,238	+		DDA3937_RS14625	0.58	-1.6
3,349,238	+		DDA3937_RS14625	0.58	+0.0
3,349,238	+		DDA3937_RS14625	0.58	-0.7
3,349,239	-		DDA3937_RS14625	0.58	+0.3
3,349,239	-		DDA3937_RS14625	0.58	-1.1
3,349,241	+		DDA3937_RS14625	0.58	+1.1
3,349,242	-		DDA3937_RS14625	0.58	-1.1
3,349,297	+		DDA3937_RS14625	0.65	-0.3
3,349,298	-		DDA3937_RS14625	0.66	+0.3
3,349,372	+		DDA3937_RS14625	0.75	-0.5
3,349,372	+		DDA3937_RS14625	0.75	-1.0
3,349,373	-		DDA3937_RS14625	0.75	+1.2
3,349,373	-		DDA3937_RS14625	0.75	+3.7
3,349,373	-		DDA3937_RS14625	0.75	-0.3
3,349,373	-		DDA3937_RS14625	0.75	-0.7
3,349,373	-		DDA3937_RS14625	0.75	-2.7
3,349,373	-		DDA3937_RS14625	0.75	-0.5
3,349,373	-		DDA3937_RS14625	0.75	-1.0