Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14305

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS14295 and DDA3937_RS14300 are separated by 10 nucleotidesDDA3937_RS14300 and DDA3937_RS14305 are separated by 16 nucleotidesDDA3937_RS14305 and DDA3937_RS14310 overlap by 4 nucleotides DDA3937_RS14295: DDA3937_RS14295 - NADH-quinone oxidoreductase subunit J, at 3,277,180 to 3,277,731 _RS14295 DDA3937_RS14300: DDA3937_RS14300 - NADH-quinone oxidoreductase subunit NuoI, at 3,277,742 to 3,278,284 _RS14300 DDA3937_RS14305: DDA3937_RS14305 - NADH-quinone oxidoreductase subunit NuoH, at 3,278,301 to 3,279,275 _RS14305 DDA3937_RS14310: DDA3937_RS14310 - NADH-quinone oxidoreductase subunit NuoG, at 3,279,272 to 3,281,998 _RS14310 Position (kb) 3278 3279 3280Strain fitness (log2 ratio) -1 0 1at 3279.253 kb on - strandat 3279.553 kb on - strand, within DDA3937_RS14310

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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3,279,253 - +0.1
3,279,553 - DDA3937_RS14310 0.10 -1.0

Or see this region's nucleotide sequence