Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14285

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS14280 and DDA3937_RS14285 are separated by 96 nucleotidesDDA3937_RS14285 and DDA3937_RS14290 overlap by 4 nucleotidesDDA3937_RS14290 and DDA3937_RS14295 overlap by 4 nucleotidesDDA3937_RS14295 and DDA3937_RS14300 are separated by 10 nucleotides DDA3937_RS14280: DDA3937_RS14280 - NADH-quinone oxidoreductase subunit M, at 3,273,402 to 3,274,937 _RS14280 DDA3937_RS14285: DDA3937_RS14285 - NADH-quinone oxidoreductase subunit L, at 3,275,034 to 3,276,884 _RS14285 DDA3937_RS14290: DDA3937_RS14290 - NADH-quinone oxidoreductase subunit NuoK, at 3,276,881 to 3,277,183 _RS14290 DDA3937_RS14295: DDA3937_RS14295 - NADH-quinone oxidoreductase subunit J, at 3,277,180 to 3,277,731 _RS14295 DDA3937_RS14300: DDA3937_RS14300 - NADH-quinone oxidoreductase subunit NuoI, at 3,277,742 to 3,278,284 _RS14300 Position (kb) 3275 3276 3277Strain fitness (log2 ratio) -1 0 1at 3274.959 kb on - strandat 3276.454 kb on + strand, within DDA3937_RS14285

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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3,274,959 - -0.2
3,276,454 + DDA3937_RS14285 0.77 +0.1

Or see this region's nucleotide sequence