Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14280

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS14275 and DDA3937_RS14280 are separated by 6 nucleotidesDDA3937_RS14280 and DDA3937_RS14285 are separated by 96 nucleotides DDA3937_RS14275: DDA3937_RS14275 - NADH-quinone oxidoreductase subunit NuoN, at 3,271,938 to 3,273,395 _RS14275 DDA3937_RS14280: DDA3937_RS14280 - NADH-quinone oxidoreductase subunit M, at 3,273,402 to 3,274,937 _RS14280 DDA3937_RS14285: DDA3937_RS14285 - NADH-quinone oxidoreductase subunit L, at 3,275,034 to 3,276,884 _RS14285 Position (kb) 3273 3274 3275Strain fitness (log2 ratio) -1 0 1at 3273.447 kb on - strandat 3273.798 kb on - strand, within DDA3937_RS14280at 3274.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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3,273,447 - -1.2
3,273,798 - DDA3937_RS14280 0.26 -0.3
3,274,959 - -0.2

Or see this region's nucleotide sequence