Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14165

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,242,481	-		DDA3937_RS14155	0.79	+0.1
3,242,523	+		DDA3937_RS14155	0.82	-2.1
3,242,524	-		DDA3937_RS14155	0.82	-0.1
3,242,593	+		DDA3937_RS14155	0.88	+0.1
3,242,593	+		DDA3937_RS14155	0.88	+0.5
3,242,594	-		DDA3937_RS14155	0.88	-0.4
3,242,603	+		DDA3937_RS14155	0.88	-1.5
3,242,623	+				+0.8
3,242,624	-				-1.1
3,242,627	+				+0.2
3,242,627	+				-2.2
3,242,627	+				+0.6
3,242,627	+				+0.2
3,242,627	+				+0.5
3,242,627	+				+0.6
3,242,627	+				-1.0
3,242,627	+				-2.2
3,242,627	+				-0.5
3,242,627	+				-0.1
3,242,628	-				-0.5
3,242,628	-				-0.8
3,242,628	-				-0.2
3,242,635	+				-0.1
3,242,639	+				-1.0
3,242,640	-				-1.0
3,242,640	-				-0.1
3,242,640	-				-0.2
3,242,671	-				+2.3
3,242,715	+				-0.3
3,242,715	+				-0.8
3,242,715	+				-0.6
3,242,716	-				+1.2
3,242,716	-				-1.7
3,242,716	-				-0.0
3,242,716	-				+0.2
3,242,719	+				-1.3
3,242,719	+				+0.3
3,242,720	-				-1.5
3,242,720	-				-0.2
3,243,137	-				-0.5
3,243,165	+				-0.4
3,243,178	-				-2.7
3,243,178	-				+1.1
3,243,202	+				-0.3
3,243,202	+				-0.0
3,243,202	+				-0.2
3,243,203	-				+0.5
3,243,229	+				-1.2
3,243,229	-				-0.8
3,243,230	-				+0.6
3,243,230	-				-0.5
3,243,230	-				+0.2
3,243,230	-				-0.2
3,243,233	+				-2.3
3,243,234	-				+0.4
3,243,234	-				-0.2
3,243,234	-				-0.1
3,243,234	-				-1.0
3,243,241	-				-1.4
3,243,243	-				-2.1
3,243,279	-				+0.5
3,243,295	+				+0.1
3,243,295	+				+1.0
3,243,295	+				-1.0
3,243,295	+				+1.0
3,243,295	+				+0.5
3,243,295	+				-1.1
3,243,296	-				-0.0
3,243,296	-				-1.5
3,243,296	-				-0.9
3,243,374	+				-0.0
3,243,374	+				-1.7
3,243,374	+				-1.2
3,243,374	+				+0.3
3,243,374	+				+1.1
3,243,374	+				-1.1
3,243,374	+				+0.5
3,243,374	+				+0.8
3,243,374	+				+0.6
3,243,374	+				-0.2
3,243,374	+				-1.6
3,243,374	+				-1.1
3,243,375	-				-0.4
3,243,375	-				-0.0
3,243,375	-				-0.8
3,243,375	-				-0.3
3,243,375	-				+0.4
3,243,375	-				+1.3
3,243,378	+				-0.8
3,243,378	+				+0.4
3,243,378	+				-0.8
3,243,378	+				-0.8
3,243,379	-				+0.2
3,243,379	-				+0.9
3,243,379	-				-1.0
3,243,379	-				+0.2
3,243,379	-				-0.5
3,243,379	-				-0.5
3,243,437	+				-1.4
3,243,438	-				-1.2
3,243,438	-				+0.5
3,243,438	-				-0.1
3,243,441	+				-0.3
3,243,448	+				+0.4
3,243,449	-				-0.7
3,243,449	-				+0.2
3,243,453	-				+0.8
3,243,453	-				-1.8
3,243,453	-				-0.8
3,243,456	+				-0.6
3,243,456	+				+3.6
3,243,456	+				+2.9
3,243,457	-				+0.3
3,243,457	-				-1.5
3,243,457	-				-0.0
3,243,460	+				+0.6
3,243,460	+				-1.7
3,243,461	-				+0.5
3,243,461	-				-0.5
3,243,703	+		DDA3937_RS14165	0.36	-0.5
3,243,704	-		DDA3937_RS14165	0.36	+0.1
3,243,704	-		DDA3937_RS14165	0.36	-0.0
3,243,704	-		DDA3937_RS14165	0.36	-0.1
3,243,788	+		DDA3937_RS14165	0.49	-0.2
3,243,789	-		DDA3937_RS14165	0.50	-1.2
3,243,790	+		DDA3937_RS14165	0.50	+0.8
3,243,791	-		DDA3937_RS14165	0.50	-1.0
3,243,800	+		DDA3937_RS14165	0.51	-0.5
3,243,800	+		DDA3937_RS14165	0.51	-1.6
3,243,830	+				-0.2
3,243,830	+		DDA3937_RS14165	0.56	+1.5
3,243,830	+		DDA3937_RS14165	0.56	+0.1
3,243,831	-		DDA3937_RS14165	0.56	+0.3
3,243,875	+		DDA3937_RS14165	0.63	+3.1
3,243,875	+		DDA3937_RS14165	0.63	+1.0
3,243,876	-		DDA3937_RS14165	0.63	+0.1
3,243,876	-		DDA3937_RS14165	0.63	-1.4
3,243,876	-		DDA3937_RS14165	0.63	-0.5
3,243,876	-		DDA3937_RS14165	0.63	-1.0
3,243,892	-		DDA3937_RS14165	0.66	+0.6
3,244,061	+				-0.5
3,244,147	+				+0.2
3,244,180	+				-0.5
3,244,180	+				-1.2
3,244,180	+				-0.2
3,244,234	-		DDA3937_RS14170	0.15	-0.9
3,244,289	+		DDA3937_RS14170	0.21	-0.5
3,244,289	+		DDA3937_RS14170	0.21	+1.6
3,244,290	-		DDA3937_RS14170	0.21	-0.5
3,244,290	-		DDA3937_RS14170	0.21	+0.1
3,244,290	-		DDA3937_RS14170	0.21	+0.4
3,244,322	+		DDA3937_RS14170	0.25	+0.6
3,244,322	+		DDA3937_RS14170	0.25	-0.2
3,244,322	+		DDA3937_RS14170	0.25	-0.2
3,244,322	+		DDA3937_RS14170	0.25	-1.0
3,244,322	+		DDA3937_RS14170	0.25	-1.2
3,244,322	+		DDA3937_RS14170	0.25	-0.7
3,244,323	-		DDA3937_RS14170	0.25	-2.5
3,244,323	-		DDA3937_RS14170	0.25	+0.2
3,244,323	-		DDA3937_RS14170	0.25	-0.2
3,244,323	-		DDA3937_RS14170	0.25	-0.9
3,244,323	-		DDA3937_RS14170	0.25	-0.5
3,244,323	-		DDA3937_RS14170	0.25	-1.7
3,244,323	-		DDA3937_RS14170	0.25	-0.8
3,244,323	-		DDA3937_RS14170	0.25	+0.5
3,244,323	-		DDA3937_RS14170	0.25	-0.0
3,244,323	-		DDA3937_RS14170	0.25	-0.6
3,244,327	+		DDA3937_RS14170	0.26	-0.4
3,244,327	+				-0.2
3,244,327	+		DDA3937_RS14170	0.26	-1.2
3,244,327	+		DDA3937_RS14170	0.26	-0.4
3,244,327	+		DDA3937_RS14170	0.26	+0.7
3,244,328	-		DDA3937_RS14170	0.26	-1.7
3,244,328	-		DDA3937_RS14170	0.26	-0.6
3,244,328	-		DDA3937_RS14170	0.26	-0.8
3,244,328	-		DDA3937_RS14170	0.26	+1.4
3,244,328	-		DDA3937_RS14170	0.26	-0.2
3,244,328	-		DDA3937_RS14170	0.26	-1.0
3,244,328	-		DDA3937_RS14170	0.26	-2.1
3,244,328	-		DDA3937_RS14170	0.26	-1.3
3,244,328	-		DDA3937_RS14170	0.26	-2.7
3,244,358	+		DDA3937_RS14170	0.29	+1.4
3,244,358	+		DDA3937_RS14170	0.29	-1.6
3,244,359	-		DDA3937_RS14170	0.29	+0.2
3,244,526	+		DDA3937_RS14170	0.48	-0.2
3,244,526	+		DDA3937_RS14170	0.48	-0.8
3,244,526	+		DDA3937_RS14170	0.48	-0.1
3,244,526	+		DDA3937_RS14170	0.48	-0.4
3,244,526	+		DDA3937_RS14170	0.48	-1.1
3,244,527	-		DDA3937_RS14170	0.48	-0.2
3,244,527	-		DDA3937_RS14170	0.48	+0.6
3,244,527	-		DDA3937_RS14170	0.48	+1.0
3,244,698	+		DDA3937_RS14170	0.67	+0.2
3,244,698	+		DDA3937_RS14170	0.67	+0.3
3,244,698	+		DDA3937_RS14170	0.67	-0.6
3,244,699	-		DDA3937_RS14170	0.67	+0.8
3,244,699	-		DDA3937_RS14170	0.67	+0.2
3,244,699	-		DDA3937_RS14170	0.67	+1.1
3,244,803	-		DDA3937_RS14170	0.78	-0.7
3,244,816	-		DDA3937_RS14170	0.80	-0.5
3,244,905	+		DDA3937_RS14170	0.90	-0.7
3,244,977	+				-0.1
3,244,978	-				-0.0
3,244,978	-				+1.1
3,244,999	-				-0.1
3,244,999	-				-0.0
3,245,015	+				+1.5
3,245,016	-				-1.3
3,245,016	-				-2.5
3,245,016	-				+1.1
3,245,048	+				-0.9
3,245,049	-				-0.4
3,245,049	-				-0.2
3,245,049	-				-0.1
3,245,049	-				-1.2
3,245,103	+				-0.5
3,245,103	+				-0.5
3,245,104	-				+0.4