Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13825

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,143,203	-		DDA3937_RS13815	0.10	-0.2
3,143,226	-		DDA3937_RS13815	0.14	-1.0
3,143,226	-		DDA3937_RS13815	0.14	-0.7
3,143,283	+				+1.4
3,143,339	+		DDA3937_RS13815	0.34	-0.0
3,143,339	+		DDA3937_RS13815	0.34	-1.4
3,143,340	-		DDA3937_RS13815	0.34	-0.2
3,143,357	+		DDA3937_RS13815	0.37	+1.8
3,143,448	+		DDA3937_RS13815	0.52	-0.9
3,143,449	-		DDA3937_RS13815	0.52	+0.3
3,143,500	+		DDA3937_RS13815	0.61	+0.8
3,143,673	+				-1.2
3,143,673	+				-0.7
3,143,674	-				+0.5
3,143,674	-				+0.4
3,143,674	-				-0.4
3,143,676	-				-2.1
3,143,749	+		DDA3937_RS13820	0.15	-0.2
3,143,792	-		DDA3937_RS13820	0.36	+0.4
3,143,814	+		DDA3937_RS13820	0.46	-0.1
3,143,815	-		DDA3937_RS13820	0.47	-0.2
3,143,815	-		DDA3937_RS13820	0.47	-0.1
3,143,815	-		DDA3937_RS13820	0.47	-0.4
3,143,815	-		DDA3937_RS13820	0.47	-0.6
3,143,819	+		DDA3937_RS13820	0.49	-0.6
3,143,819	+		DDA3937_RS13820	0.49	+0.7
3,143,902	+		DDA3937_RS13820	0.88	-1.0
3,143,903	-		DDA3937_RS13820	0.89	-0.8
3,143,903	-		DDA3937_RS13820	0.89	-1.0
3,143,927	+				-0.7
3,143,931	-				+0.2
3,143,937	-				-0.5
3,143,937	-				-0.5
3,143,938	+				+0.3
3,143,939	-				-1.0
3,143,950	+				+0.5
3,143,987	+				-0.3
3,143,996	+				+1.3
3,144,026	+				-0.5
3,144,027	-				+0.8
3,144,035	-				+0.4
3,144,037	+				+0.5
3,144,044	+				-0.8
3,144,074	-				+0.1
3,144,109	-				-0.7
3,144,109	-				+0.1
3,144,109	-				-0.5
3,144,114	+				+0.0
3,144,114	+				-1.6
3,144,115	-				-0.4
3,144,136	+				-0.3
3,144,173	+				+1.0
3,144,173	+				+1.0
3,144,174	-				+0.0
3,144,174	-				-1.2
3,144,174	-				-1.9
3,144,174	-				-0.6
3,144,198	+				-0.2
3,144,252	+				+1.3
3,144,252	+				-1.2
3,144,253	-				+0.5
3,144,253	-				-3.2
3,144,253	-				-1.0
3,144,320	+				-0.2
3,144,320	+				-0.9
3,144,320	+				-1.0
3,144,320	+				-0.8
3,144,321	-				-0.4
3,144,324	-				+0.2
3,144,324	-				+1.8
3,144,324	-				-2.0
3,144,324	-				-1.2
3,144,324	-				-0.7
3,144,373	-		DDA3937_RS13825	0.12	-1.2
3,144,448	-		DDA3937_RS13825	0.16	+0.8
3,144,479	+		DDA3937_RS13825	0.18	-0.2
3,144,479	+		DDA3937_RS13825	0.18	-1.4
3,144,480	-		DDA3937_RS13825	0.18	+0.2
3,144,480	-		DDA3937_RS13825	0.18	+2.2
3,144,480	-		DDA3937_RS13825	0.18	-0.0
3,144,480	-		DDA3937_RS13825	0.18	-0.4
3,144,480	-		DDA3937_RS13825	0.18	-2.3
3,144,480	-		DDA3937_RS13825	0.18	-1.6
3,144,516	-		DDA3937_RS13825	0.20	-0.1
3,144,541	-		DDA3937_RS13825	0.21	+0.2
3,144,541	-		DDA3937_RS13825	0.21	+0.4
3,144,575	-		DDA3937_RS13825	0.23	-1.0
3,144,590	+		DDA3937_RS13825	0.24	-0.8
3,144,600	+		DDA3937_RS13825	0.24	+1.3
3,144,600	+		DDA3937_RS13825	0.24	-1.1
3,144,600	+				+1.8
3,144,600	+		DDA3937_RS13825	0.24	-0.9
3,144,600	+		DDA3937_RS13825	0.24	-0.4
3,144,600	+		DDA3937_RS13825	0.24	-0.8
3,144,600	+		DDA3937_RS13825	0.24	-0.7
3,144,601	-		DDA3937_RS13825	0.24	-0.6
3,144,601	-		DDA3937_RS13825	0.24	-1.3
3,144,601	-		DDA3937_RS13825	0.24	-1.3
3,144,601	-		DDA3937_RS13825	0.24	+0.2
3,144,601	-		DDA3937_RS13825	0.24	+0.9
3,144,601	-		DDA3937_RS13825	0.24	-1.3
3,144,608	+		DDA3937_RS13825	0.25	-2.6
3,144,608	+		DDA3937_RS13825	0.25	-0.4
3,144,608	+		DDA3937_RS13825	0.25	+0.1
3,144,608	+		DDA3937_RS13825	0.25	-0.2
3,144,608	+		DDA3937_RS13825	0.25	-0.8
3,144,608	+		DDA3937_RS13825	0.25	-1.1
3,144,608	+		DDA3937_RS13825	0.25	+0.2
3,144,608	+		DDA3937_RS13825	0.25	+0.3
3,144,608	+		DDA3937_RS13825	0.25	+0.2
3,144,608	+		DDA3937_RS13825	0.25	-0.2
3,144,608	+		DDA3937_RS13825	0.25	-0.5
3,144,609	-		DDA3937_RS13825	0.25	+0.1
3,144,609	-		DDA3937_RS13825	0.25	-0.0
3,144,609	-		DDA3937_RS13825	0.25	+0.2
3,144,609	-		DDA3937_RS13825	0.25	-1.6
3,144,609	-		DDA3937_RS13825	0.25	+0.6
3,144,609	-				-0.2
3,144,609	-		DDA3937_RS13825	0.25	-1.0
3,144,609	-		DDA3937_RS13825	0.25	-1.0
3,144,609	-		DDA3937_RS13825	0.25	+0.2
3,144,660	+		DDA3937_RS13825	0.27	-0.6
3,144,661	-		DDA3937_RS13825	0.27	-0.6
3,144,661	-		DDA3937_RS13825	0.27	+0.4
3,144,661	-		DDA3937_RS13825	0.27	-0.2
3,144,661	-		DDA3937_RS13825	0.27	-0.3
3,144,678	+		DDA3937_RS13825	0.28	-0.8
3,144,678	+		DDA3937_RS13825	0.28	-0.2
3,144,692	+		DDA3937_RS13825	0.29	-0.7
3,144,693	-		DDA3937_RS13825	0.29	-1.5
3,144,693	-		DDA3937_RS13825	0.29	+0.2
3,144,693	-		DDA3937_RS13825	0.29	-0.5
3,144,807	+		DDA3937_RS13825	0.35	+0.2
3,144,901	+		DDA3937_RS13825	0.40	+0.2
3,144,901	+				+0.2
3,144,902	-		DDA3937_RS13825	0.40	-1.2
3,144,903	+		DDA3937_RS13825	0.40	+0.2
3,144,903	+		DDA3937_RS13825	0.40	+0.2
3,144,903	+				-0.6
3,144,903	+		DDA3937_RS13825	0.40	-1.8
3,144,903	+		DDA3937_RS13825	0.40	+0.5
3,144,903	+		DDA3937_RS13825	0.40	-0.8
3,144,903	+		DDA3937_RS13825	0.40	-0.8
3,144,904	-		DDA3937_RS13825	0.40	+0.8
3,144,904	-		DDA3937_RS13825	0.40	+0.4
3,144,904	-		DDA3937_RS13825	0.40	-1.2
3,144,904	-		DDA3937_RS13825	0.40	+0.4
3,144,947	+		DDA3937_RS13825	0.43	-1.4
3,144,947	+		DDA3937_RS13825	0.43	+0.6
3,144,948	-		DDA3937_RS13825	0.43	+2.2
3,144,965	+		DDA3937_RS13825	0.44	-0.6
3,144,966	-		DDA3937_RS13825	0.44	-0.6
3,145,046	+		DDA3937_RS13825	0.48	-0.7
3,145,046	+		DDA3937_RS13825	0.48	-0.4
3,145,046	+				+1.8
3,145,046	+		DDA3937_RS13825	0.48	-0.6
3,145,046	+		DDA3937_RS13825	0.48	+2.5
3,145,047	-		DDA3937_RS13825	0.48	+0.4
3,145,047	-		DDA3937_RS13825	0.48	-0.6
3,145,047	-		DDA3937_RS13825	0.48	+0.2
3,145,048	+		DDA3937_RS13825	0.48	-0.5
3,145,048	+		DDA3937_RS13825	0.48	-1.4
3,145,048	+		DDA3937_RS13825	0.48	-0.1
3,145,048	+		DDA3937_RS13825	0.48	-0.1
3,145,049	-		DDA3937_RS13825	0.48	-0.7
3,145,049	-		DDA3937_RS13825	0.48	-1.7
3,145,049	-		DDA3937_RS13825	0.48	-0.7
3,145,049	-		DDA3937_RS13825	0.48	-0.4
3,145,049	-		DDA3937_RS13825	0.48	+3.0
3,145,079	+		DDA3937_RS13825	0.50	-0.3
3,145,079	+		DDA3937_RS13825	0.50	+0.3
3,145,079	+		DDA3937_RS13825	0.50	+0.2
3,145,080	-		DDA3937_RS13825	0.50	-0.2
3,145,080	-		DDA3937_RS13825	0.50	-1.1
3,145,080	-		DDA3937_RS13825	0.50	-1.0
3,145,080	-		DDA3937_RS13825	0.50	+0.5
3,145,080	-		DDA3937_RS13825	0.50	+1.6
3,145,081	+		DDA3937_RS13825	0.50	-1.1
3,145,081	+				-0.6
3,145,082	-		DDA3937_RS13825	0.50	-1.0
3,145,082	-		DDA3937_RS13825	0.50	-0.8
3,145,122	-		DDA3937_RS13825	0.52	-0.6
3,145,122	-		DDA3937_RS13825	0.52	-0.7
3,145,125	+		DDA3937_RS13825	0.52	+1.1
3,145,126	-		DDA3937_RS13825	0.52	-0.1
3,145,143	+		DDA3937_RS13825	0.53	+0.3
3,145,143	+		DDA3937_RS13825	0.53	+1.2
3,145,143	+		DDA3937_RS13825	0.53	+1.3
3,145,143	+		DDA3937_RS13825	0.53	+1.0
3,145,144	-		DDA3937_RS13825	0.53	-0.9
3,145,144	-		DDA3937_RS13825	0.53	-0.4
3,145,144	-		DDA3937_RS13825	0.53	-2.1
3,145,144	-		DDA3937_RS13825	0.53	+0.2
3,145,144	-		DDA3937_RS13825	0.53	-1.7
3,145,144	-		DDA3937_RS13825	0.53	-1.4
3,145,144	-		DDA3937_RS13825	0.53	+1.0
3,145,144	-		DDA3937_RS13825	0.53	+0.4
3,145,144	-		DDA3937_RS13825	0.53	-2.4
3,145,145	+		DDA3937_RS13825	0.53	+2.3
3,145,145	+		DDA3937_RS13825	0.53	-0.8
3,145,145	+		DDA3937_RS13825	0.53	+0.4
3,145,146	-		DDA3937_RS13825	0.53	+0.1
3,145,146	-		DDA3937_RS13825	0.53	+0.2
3,145,146	-		DDA3937_RS13825	0.53	-1.3
3,145,236	+		DDA3937_RS13825	0.58	-0.2
3,145,236	+		DDA3937_RS13825	0.58	-0.9
3,145,236	+		DDA3937_RS13825	0.58	-0.8
3,145,236	+		DDA3937_RS13825	0.58	-0.8
3,145,237	-		DDA3937_RS13825	0.58	-0.2
3,145,254	+		DDA3937_RS13825	0.59	-0.6
3,145,255	-		DDA3937_RS13825	0.59	+0.8
3,145,263	-		DDA3937_RS13825	0.59	-0.0
3,145,263	-		DDA3937_RS13825	0.59	+0.0
3,145,328	+		DDA3937_RS13825	0.63	+0.4
3,145,328	+		DDA3937_RS13825	0.63	-0.4
3,145,329	-		DDA3937_RS13825	0.63	-1.2
3,145,329	-		DDA3937_RS13825	0.63	-1.8
3,145,329	-		DDA3937_RS13825	0.63	-2.4
3,145,329	-		DDA3937_RS13825	0.63	-0.7
3,145,369	-		DDA3937_RS13825	0.65	-1.6
3,145,369	-		DDA3937_RS13825	0.65	-0.9
3,145,381	-		DDA3937_RS13825	0.66	+0.1
3,145,393	-		DDA3937_RS13825	0.66	-0.7
3,145,469	+		DDA3937_RS13825	0.70	+1.1
3,145,470	-		DDA3937_RS13825	0.70	-0.6
3,145,473	+		DDA3937_RS13825	0.71	-0.2
3,145,474	-		DDA3937_RS13825	0.71	+0.2
3,145,474	-		DDA3937_RS13825	0.71	-1.2
3,145,474	-		DDA3937_RS13825	0.71	-0.3
3,145,476	+		DDA3937_RS13825	0.71	-1.9
3,145,482	-		DDA3937_RS13825	0.71	+0.8
3,145,494	+		DDA3937_RS13825	0.72	-0.8
3,145,495	-				+0.2
3,145,515	-		DDA3937_RS13825	0.73	+0.3
3,145,559	+		DDA3937_RS13825	0.75	-2.0
3,145,560	-		DDA3937_RS13825	0.75	-1.2
3,145,560	-		DDA3937_RS13825	0.75	+0.3
3,145,560	-		DDA3937_RS13825	0.75	-0.4
3,145,616	+		DDA3937_RS13825	0.78	-1.0
3,145,658	+		DDA3937_RS13825	0.80	-0.6
3,145,658	+		DDA3937_RS13825	0.80	+0.6
3,145,658	+		DDA3937_RS13825	0.80	-2.0
3,145,659	-		DDA3937_RS13825	0.80	+1.0
3,145,659	-		DDA3937_RS13825	0.80	-1.7
3,145,662	-		DDA3937_RS13825	0.81	+2.3
3,145,673	+		DDA3937_RS13825	0.81	-0.0
3,145,691	+		DDA3937_RS13825	0.82	-0.2
3,145,691	+		DDA3937_RS13825	0.82	+1.0
3,145,692	-		DDA3937_RS13825	0.82	+0.8
3,145,692	-		DDA3937_RS13825	0.82	+1.2
3,145,692	-		DDA3937_RS13825	0.82	-2.0
3,145,692	-		DDA3937_RS13825	0.82	-1.0
3,145,692	-		DDA3937_RS13825	0.82	-0.3
3,145,723	-		DDA3937_RS13825	0.84	-1.3
3,145,758	+		DDA3937_RS13825	0.86	-0.5
3,145,758	+		DDA3937_RS13825	0.86	-1.0
3,145,758	+		DDA3937_RS13825	0.86	-0.7
3,145,796	+		DDA3937_RS13825	0.88	-0.8
3,145,797	-				-0.6
3,145,814	+		DDA3937_RS13825	0.89	-0.6
3,145,918	-				-1.4
3,145,922	-				-0.0
3,145,940	+				-1.0
3,145,940	+				-2.0
3,145,941	-				-0.9
3,145,946	+				-0.4
3,145,947	-				-1.1
3,145,956	+				-0.6
3,145,956	+				+1.2
3,145,957	-				+0.1
3,145,980	+				+1.6
3,145,981	-				-2.0
3,145,981	-				+0.8
3,146,053	+				+0.3
3,146,053	+				+0.2
3,146,053	+				-0.8
3,146,054	-				-0.2
3,146,054	-				-1.8
3,146,054	-				-0.1
3,146,057	+				+0.2
3,146,057	+				+0.8
3,146,075	+				+0.2
3,146,075	+				+0.9
3,146,075	+				-0.2
3,146,076	-				-1.0
3,146,076	-				+0.8
3,146,097	+				-1.0
3,146,097	+				+1.1
3,146,097	+				-1.3
3,146,098	-				-0.2
3,146,098	-				-0.0
3,146,119	+				-2.4
3,146,119	+				-0.8
3,146,120	-				-1.4
3,146,176	-				-1.0
3,146,176	-				-0.9
3,146,196	+				+0.0
3,146,196	+				-1.2
3,146,196	+				+0.4
3,146,197	-				+0.8
3,146,197	-				+0.5
3,146,215	+				-1.8
3,146,215	+				-2.3
3,146,216	-				+0.4
3,146,216	-				-0.1
3,146,216	-				-2.6
3,146,219	+				-0.0
3,146,219	+				+0.3
3,146,219	+				+1.5
3,146,219	+				+0.8
3,146,219	+				-0.4
3,146,220	-				+0.3
3,146,220	-				-2.9
3,146,220	-				-1.2
3,146,220	-				+1.1
3,146,220	-				-0.0
3,146,235	-				-0.5
3,146,237	+				-0.4
3,146,250	+				-0.7
3,146,250	+				-1.4
3,146,251	-				-0.6
3,146,251	-				-1.0
3,146,251	-				-0.4
3,146,254	-				-1.9
3,146,254	-				-0.1
3,146,254	-				+0.4
3,146,309	+				+0.0
3,146,310	-				+0.2
3,146,321	-				-0.5
3,146,410	+				-0.1
3,146,410	+				-0.2
3,146,410	+				+0.4
3,146,410	+				-0.2
3,146,411	-				-0.1
3,146,411	-				-1.2
3,146,411	-				-2.0
3,146,411	-				-0.6
3,146,413	+				+2.3
3,146,434	-				+1.2
3,146,437	+				+0.1
3,146,446	-				-1.2
3,146,446	-				-1.2
3,146,501	+				-1.0
3,146,501	+				-1.4
3,146,501	+				+1.8
3,146,502	-				-1.2
3,146,550	+				-0.1
3,146,551	-				-0.6
3,146,551	-				+0.8
3,146,551	-				-0.7
3,146,577	+				+0.3
3,146,578	-				+0.8
3,146,602	+				-0.4
3,146,706	-				-1.1
3,146,730	-				-0.2
3,146,733	+				+0.4
3,146,733	+				+1.3
3,146,734	-				+0.5
3,146,740	+				+2.8
3,146,741	-				+0.9