Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13650

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,105,219	+		DDA3937_RS13645	0.48	+0.7
3,105,220	-		DDA3937_RS13645	0.48	-0.9
3,105,220	-		DDA3937_RS13645	0.48	-0.3
3,105,255	-		DDA3937_RS13645	0.51	+0.2
3,105,261	+		DDA3937_RS13645	0.51	+0.2
3,105,261	+		DDA3937_RS13645	0.51	+0.2
3,105,277	-		DDA3937_RS13645	0.52	+0.3
3,105,301	+		DDA3937_RS13645	0.54	-0.4
3,105,331	-		DDA3937_RS13645	0.56	-1.8
3,105,367	-		DDA3937_RS13645	0.59	+0.0
3,105,385	-		DDA3937_RS13645	0.60	-0.7
3,105,385	-		DDA3937_RS13645	0.60	-0.5
3,105,385	-		DDA3937_RS13645	0.60	+0.0
3,105,389	-		DDA3937_RS13645	0.60	+0.9
3,105,445	-		DDA3937_RS13645	0.64	+0.7
3,105,499	-		DDA3937_RS13645	0.68	-1.7
3,105,499	-		DDA3937_RS13645	0.68	+0.7
3,105,499	-		DDA3937_RS13645	0.68	-1.6
3,105,502	+		DDA3937_RS13645	0.68	-0.6
3,105,551	-		DDA3937_RS13645	0.72	-0.2
3,105,551	-		DDA3937_RS13645	0.72	-1.3
3,105,573	+		DDA3937_RS13645	0.73	-1.2
3,105,599	+		DDA3937_RS13645	0.75	-0.3
3,105,604	+		DDA3937_RS13645	0.75	+1.5
3,105,615	+		DDA3937_RS13645	0.76	+0.2
3,105,616	-		DDA3937_RS13645	0.76	-1.1
3,105,619	+		DDA3937_RS13645	0.76	-0.5
3,105,646	+		DDA3937_RS13645	0.78	+0.2
3,105,646	+		DDA3937_RS13645	0.78	+0.2
3,105,647	-		DDA3937_RS13645	0.78	+2.2
3,105,693	+		DDA3937_RS13645	0.82	-2.2
3,105,694	-		DDA3937_RS13645	0.82	-2.2
3,105,694	-		DDA3937_RS13645	0.82	+0.3
3,105,721	+		DDA3937_RS13645	0.84	+1.3
3,105,832	-				-0.3
3,105,836	+				+0.0
3,105,901	-				-0.1
3,105,964	+				+0.3
3,106,118	+				+1.7
3,106,119	-				+0.2
3,106,140	-				+1.7
3,106,155	+				-1.8
3,106,156	-				-1.4
3,106,160	-				-0.8
3,106,242	-		DDA3937_RS13650	0.13	+0.4
3,106,257	-		DDA3937_RS13650	0.16	-0.6
3,106,262	+		DDA3937_RS13650	0.17	-1.1
3,106,302	+		DDA3937_RS13650	0.24	+0.3
3,106,304	+		DDA3937_RS13650	0.25	+0.2
3,106,304	+		DDA3937_RS13650	0.25	-1.3
3,106,304	+		DDA3937_RS13650	0.25	+1.0
3,106,308	+		DDA3937_RS13650	0.25	+2.3
3,106,308	+		DDA3937_RS13650	0.25	-1.3
3,106,317	-		DDA3937_RS13650	0.27	+0.5
3,106,330	-		DDA3937_RS13650	0.29	-0.2
3,106,336	-		DDA3937_RS13650	0.31	-1.3
3,106,421	+		DDA3937_RS13650	0.46	+3.0
3,106,428	+		DDA3937_RS13650	0.48	-1.7
3,106,442	+		DDA3937_RS13650	0.50	-0.3
3,106,442	+		DDA3937_RS13650	0.50	-0.9
3,106,443	-		DDA3937_RS13650	0.50	-0.5
3,106,446	+		DDA3937_RS13650	0.51	+1.2
3,106,446	+				+0.2
3,106,447	-		DDA3937_RS13650	0.51	-0.4
3,106,511	+		DDA3937_RS13650	0.63	-0.5
3,106,531	+		DDA3937_RS13650	0.66	+2.3
3,106,586	-		DDA3937_RS13650	0.77	-0.6
3,106,619	-		DDA3937_RS13650	0.83	-2.1
3,106,635	+		DDA3937_RS13650	0.86	+0.0
3,106,635	+		DDA3937_RS13650	0.86	+1.7
3,106,636	-		DDA3937_RS13650	0.86	+0.2
3,106,741	+				+0.7
3,106,743	+				-0.3
3,106,746	-				-0.3
3,106,915	-		DDA3937_RS13655	0.12	+3.1
3,106,965	+		DDA3937_RS13655	0.19	+1.5
3,106,965	+		DDA3937_RS13655	0.19	-0.4
3,106,966	-		DDA3937_RS13655	0.19	-0.8
3,107,012	-		DDA3937_RS13655	0.25	-2.3
3,107,024	-		DDA3937_RS13655	0.27	-1.4
3,107,121	+		DDA3937_RS13655	0.40	-1.0
3,107,129	-		DDA3937_RS13655	0.41	-1.1
3,107,129	-		DDA3937_RS13655	0.41	-1.3
3,107,152	+		DDA3937_RS13655	0.44	-1.3
3,107,206	+		DDA3937_RS13655	0.52	-0.4
3,107,207	-		DDA3937_RS13655	0.52	-1.4
3,107,221	+		DDA3937_RS13655	0.54	-1.4
3,107,248	+		DDA3937_RS13655	0.58	-0.6
3,107,249	-		DDA3937_RS13655	0.58	-1.4
3,107,249	-		DDA3937_RS13655	0.58	-0.9
3,107,305	+		DDA3937_RS13655	0.66	+0.2
3,107,306	-		DDA3937_RS13655	0.66	-0.8
3,107,306	-		DDA3937_RS13655	0.66	+0.6
3,107,333	+		DDA3937_RS13655	0.69	-2.3
3,107,334	-		DDA3937_RS13655	0.70	+2.3
3,107,353	+		DDA3937_RS13655	0.72	+0.4
3,107,353	+		DDA3937_RS13655	0.72	-1.3
3,107,354	-		DDA3937_RS13655	0.72	+0.1
3,107,384	+		DDA3937_RS13655	0.76	-0.4
3,107,384	+				+0.7
3,107,385	-		DDA3937_RS13655	0.77	-0.8
3,107,431	+		DDA3937_RS13655	0.83	-0.6
3,107,440	+		DDA3937_RS13655	0.84	+0.5
3,107,440	+		DDA3937_RS13655	0.84	+0.2
3,107,441	-		DDA3937_RS13655	0.84	-0.1
3,107,441	-		DDA3937_RS13655	0.84	-0.8
3,107,441	-		DDA3937_RS13655	0.84	-1.4
3,107,441	-		DDA3937_RS13655	0.84	-1.8
3,107,441	-		DDA3937_RS13655	0.84	-0.3
3,107,441	-		DDA3937_RS13655	0.84	+0.6
3,107,442	+		DDA3937_RS13655	0.84	-0.8
3,107,442	+		DDA3937_RS13655	0.84	+0.9
3,107,442	+		DDA3937_RS13655	0.84	-0.6
3,107,442	+		DDA3937_RS13655	0.84	-0.7
3,107,442	+		DDA3937_RS13655	0.84	-0.5
3,107,442	+		DDA3937_RS13655	0.84	-1.3
3,107,442	+		DDA3937_RS13655	0.84	-0.8
3,107,442	+		DDA3937_RS13655	0.84	-1.1
3,107,442	+		DDA3937_RS13655	0.84	+0.0
3,107,442	+		DDA3937_RS13655	0.84	-1.2
3,107,443	-		DDA3937_RS13655	0.85	-1.3
3,107,443	-		DDA3937_RS13655	0.85	-0.7
3,107,443	-		DDA3937_RS13655	0.85	+1.3
3,107,443	-		DDA3937_RS13655	0.85	-0.4
3,107,443	-		DDA3937_RS13655	0.85	-1.3
3,107,443	-		DDA3937_RS13655	0.85	-2.3
3,107,450	-		DDA3937_RS13655	0.86	-0.4
3,107,554	+				-1.1
3,107,554	+				-0.1
3,107,554	+				-0.6
3,107,554	+				-0.1
3,107,555	-				+0.2
3,107,555	-				-0.2
3,107,555	-				+0.4
3,107,555	-				+0.9
3,107,562	-				+0.7
3,107,590	+				+0.2
3,107,624	+				-0.8
3,107,624	+				+0.4
3,107,624	+				-0.9
3,107,624	+				-1.3
3,107,625	-				-0.3
3,107,625	-				-0.6
3,107,625	-				+1.0
3,107,628	+				-0.3
3,107,657	+				+2.1
3,107,657	+				-1.3
3,107,658	-				+0.2
3,107,693	+				-0.3
3,107,693	+				-0.3
3,107,693	+				-1.2
3,107,693	+				+0.3
3,107,693	+				-2.1
3,107,693	+				-1.8
3,107,693	+				+0.4
3,107,693	+				-0.3
3,107,693	+				+1.0
3,107,693	+				+0.7
3,107,693	+				+0.7
3,107,693	+				-1.3
3,107,694	-				-0.3
3,107,694	-				+0.7
3,107,694	-				+0.3
3,107,694	-				-0.7
3,107,694	-				+0.0
3,107,694	-				-0.6
3,107,694	-				-0.3
3,107,694	-				+0.7
3,107,700	-				+1.2