Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13595

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,094,687	-		DDA3937_RS13585	0.87	-0.0
3,094,687	-		DDA3937_RS13585	0.87	-1.3
3,094,687	-		DDA3937_RS13585	0.87	-0.5
3,094,700	-				-0.3
3,094,700	-				-0.1
3,094,700	-				-1.3
3,094,729	+				-0.1
3,094,730	-				-0.8
3,094,841	-		DDA3937_RS13590	0.12	+0.5
3,094,871	+		DDA3937_RS13590	0.18	-0.4
3,094,871	+		DDA3937_RS13590	0.18	-1.3
3,094,872	-		DDA3937_RS13590	0.19	+0.4
3,094,872	-		DDA3937_RS13590	0.19	+2.6
3,094,881	-		DDA3937_RS13590	0.20	-0.8
3,094,881	-		DDA3937_RS13590	0.20	+1.2
3,094,970	-		DDA3937_RS13590	0.39	+0.5
3,095,034	+		DDA3937_RS13590	0.52	-0.8
3,095,035	-		DDA3937_RS13590	0.53	-0.8
3,095,036	+		DDA3937_RS13590	0.53	+0.5
3,095,036	+		DDA3937_RS13590	0.53	-1.7
3,095,036	+		DDA3937_RS13590	0.53	+1.2
3,095,037	-		DDA3937_RS13590	0.53	-0.6
3,095,037	-		DDA3937_RS13590	0.53	-2.0
3,095,037	-		DDA3937_RS13590	0.53	+1.1
3,095,049	+		DDA3937_RS13590	0.55	-0.8
3,095,050	-		DDA3937_RS13590	0.56	-0.8
3,095,050	-		DDA3937_RS13590	0.56	+1.0
3,095,082	+		DDA3937_RS13590	0.62	-0.6
3,095,082	+		DDA3937_RS13590	0.62	+0.0
3,095,082	+		DDA3937_RS13590	0.62	-1.1
3,095,083	-		DDA3937_RS13590	0.62	-0.6
3,095,083	-		DDA3937_RS13590	0.62	-1.2
3,095,083	-		DDA3937_RS13590	0.62	-1.0
3,095,083	-		DDA3937_RS13590	0.62	-0.3
3,095,220	+				-3.0
3,095,221	-				+0.1
3,095,253	-				-0.8
3,095,253	-				-0.6
3,095,256	+				-0.6
3,095,256	+				-1.3
3,095,257	-				-0.6
3,095,265	+				+0.4
3,095,265	+				-1.2
3,095,266	-				-1.8
3,095,275	-				-1.3
3,095,275	-				+0.7
3,095,275	-				-0.3
3,095,275	-				-0.5
3,095,276	+				-1.7
3,095,276	+				+1.2
3,095,277	-				-2.6
3,095,299	+				-1.6
3,095,300	-				-0.7
3,095,300	-				-0.8
3,095,300	-				-1.0
3,095,300	-				-1.3
3,095,300	-				-2.2
3,095,300	-				+1.2
3,095,300	-				-0.7
3,095,300	-				+0.4
3,095,301	+				+1.7
3,095,301	+				-0.8
3,095,301	+				+0.7
3,095,301	+				-1.2
3,095,301	+				+1.0
3,095,301	+				+1.4
3,095,301	+				-0.4
3,095,301	+				+0.6
3,095,301	+				-0.3
3,095,301	+				-0.6
3,095,302	-				-0.3
3,095,302	-				-0.3
3,095,302	-				+0.1
3,095,302	-				-1.2
3,095,302	-				+0.9
3,095,302	-				+2.7
3,095,302	-				+0.7
3,095,302	-				+1.7
3,095,302	-				-1.5
3,095,302	-				-2.3
3,095,303	+				+0.7
3,095,303	+				-0.8
3,095,303	+				+0.3
3,095,303	+				+0.7
3,095,303	+				-0.3
3,095,303	+				+2.2
3,095,303	+				-1.3
3,095,303	+				-0.3
3,095,304	-				-0.8
3,095,304	-				+0.6
3,095,304	-				-0.4
3,095,306	-				-0.1
3,095,310	+				-0.4
3,095,310	+				-1.1
3,095,310	+				-1.3
3,095,310	+				+0.5
3,095,310	+				-1.4
3,095,311	-				-0.3
3,095,311	-				+0.1
3,095,311	-				-0.4
3,095,311	-				-0.8
3,095,333	+				-0.3
3,095,334	-				-0.8
3,095,334	-				-1.1
3,095,344	+				+1.0
3,095,344	+				+0.7
3,095,355	-				+0.7
3,095,355	-				-1.0
3,095,355	-				+1.3
3,095,356	+				-0.5
3,095,356	+				-0.6
3,095,357	-				+0.1
3,095,357	-				-2.2
3,095,357	-				+0.3
3,095,389	-				-0.8
3,095,399	+				-0.5
3,095,399	+				-0.1
3,095,399	+				-1.1
3,095,479	+				-1.6
3,095,480	-				-2.8
3,095,480	-				-0.3
3,095,480	-				+0.1
3,095,480	-				-0.6
3,095,486	-				-2.7
3,095,486	-				-1.1
3,095,487	+				+0.7
3,095,488	-				-1.3
3,095,488	-				+0.2
3,095,510	-				+1.2
3,095,510	-				-0.3
3,095,571	+				-0.8
3,095,572	-				-1.5
3,095,572	-				-1.5
3,095,596	+				-2.3
3,095,605	+				-1.4
3,095,605	+				-0.8
3,095,606	-				-0.1
3,095,606	-				-1.1
3,095,670	+				-0.7
3,095,670	+				-0.4
3,095,671	-				+1.4
3,095,671	-				+0.3
3,095,678	+				-1.7
3,095,679	-				+0.7
3,095,679	-				+0.6
3,095,679	-				+0.5
3,095,679	-				-0.3
3,095,679	-				-0.3
3,095,679	-				-1.8
3,095,679	-				-2.6
3,095,679	-				-0.1
3,095,679	-				-0.4
3,095,682	+				-0.7
3,095,683	-				-0.2
3,095,683	-				+1.2
3,095,683	-				-0.7
3,095,683	-				-0.8
3,095,697	+				+0.7
3,095,697	+				+1.5
3,095,698	-				+0.4
3,095,698	-				-0.3
3,095,718	+				-1.0
3,095,719	-				+2.3
3,095,719	-				-0.3
3,096,033	-		DDA3937_RS13595	0.24	+0.4
3,096,033	-		DDA3937_RS13595	0.24	+0.5
3,096,106	-		DDA3937_RS13595	0.29	-0.8
3,096,108	+		DDA3937_RS13595	0.29	-0.9
3,096,108	+		DDA3937_RS13595	0.29	-0.8
3,096,109	-		DDA3937_RS13595	0.29	-0.8
3,096,109	-		DDA3937_RS13595	0.29	+1.2
3,096,109	-		DDA3937_RS13595	0.29	-0.2
3,096,243	+		DDA3937_RS13595	0.39	-0.1
3,096,243	+		DDA3937_RS13595	0.39	-0.2
3,096,244	-		DDA3937_RS13595	0.39	+0.4
3,096,262	-		DDA3937_RS13595	0.40	-1.3
3,096,270	+		DDA3937_RS13595	0.41	-1.6
3,096,271	-				+0.2
3,096,271	-		DDA3937_RS13595	0.41	+0.7
3,096,271	-		DDA3937_RS13595	0.41	-0.8
3,096,271	-		DDA3937_RS13595	0.41	-1.4
3,096,271	-		DDA3937_RS13595	0.41	+0.2
3,096,271	-				-0.3
3,096,272	+		DDA3937_RS13595	0.41	+0.9
3,096,272	+		DDA3937_RS13595	0.41	-0.8
3,096,272	+		DDA3937_RS13595	0.41	-2.0
3,096,273	-		DDA3937_RS13595	0.41	-1.3
3,096,273	-		DDA3937_RS13595	0.41	+0.1
3,096,273	-		DDA3937_RS13595	0.41	+0.2
3,096,320	+		DDA3937_RS13595	0.44	-0.4
3,096,361	+		DDA3937_RS13595	0.47	-0.8
3,096,374	+		DDA3937_RS13595	0.48	-0.3
3,096,374	+		DDA3937_RS13595	0.48	-0.3
3,096,374	+		DDA3937_RS13595	0.48	-2.1
3,096,374	+		DDA3937_RS13595	0.48	-1.6
3,096,374	+		DDA3937_RS13595	0.48	+1.7
3,096,374	+		DDA3937_RS13595	0.48	-1.1
3,096,374	+		DDA3937_RS13595	0.48	-1.4
3,096,374	+		DDA3937_RS13595	0.48	-1.2
3,096,374	+		DDA3937_RS13595	0.48	+0.1
3,096,374	+		DDA3937_RS13595	0.48	+0.0
3,096,375	-		DDA3937_RS13595	0.48	-1.1
3,096,375	-		DDA3937_RS13595	0.48	+1.0
3,096,375	-		DDA3937_RS13595	0.48	+0.3
3,096,375	-		DDA3937_RS13595	0.48	-1.1
3,096,375	-		DDA3937_RS13595	0.48	+0.7
3,096,375	-		DDA3937_RS13595	0.48	-0.6
3,096,375	-		DDA3937_RS13595	0.48	+0.3
3,096,416	+		DDA3937_RS13595	0.51	-1.3
3,096,416	+		DDA3937_RS13595	0.51	-2.3
3,096,416	+		DDA3937_RS13595	0.51	-0.3
3,096,417	-		DDA3937_RS13595	0.51	-1.2
3,096,420	+		DDA3937_RS13595	0.51	-0.4
3,096,420	+		DDA3937_RS13595	0.51	+0.4
3,096,421	-		DDA3937_RS13595	0.51	-1.6
3,096,436	+		DDA3937_RS13595	0.52	+0.7
3,096,437	-		DDA3937_RS13595	0.52	-0.8
3,096,467	-		DDA3937_RS13595	0.54	-2.4
3,096,645	+		DDA3937_RS13595	0.67	+0.6
3,096,709	+		DDA3937_RS13595	0.71	-0.1
3,096,709	+		DDA3937_RS13595	0.71	+2.2
3,096,709	+		DDA3937_RS13595	0.71	-1.5
3,096,710	-		DDA3937_RS13595	0.71	-0.6
3,096,710	-		DDA3937_RS13595	0.71	-0.9
3,096,710	-		DDA3937_RS13595	0.71	+0.7
3,096,710	-		DDA3937_RS13595	0.71	-0.8
3,096,710	-		DDA3937_RS13595	0.71	-0.3
3,096,711	+		DDA3937_RS13595	0.71	-2.4
3,096,711	+		DDA3937_RS13595	0.71	-1.1
3,096,711	+		DDA3937_RS13595	0.71	-1.7
3,096,711	+		DDA3937_RS13595	0.71	-1.8
3,096,712	-		DDA3937_RS13595	0.71	-0.3
3,096,712	-		DDA3937_RS13595	0.71	-0.3
3,096,765	+		DDA3937_RS13595	0.75	-0.4
3,096,790	+		DDA3937_RS13595	0.77	-0.4
3,096,790	+		DDA3937_RS13595	0.77	-0.5
3,096,791	-		DDA3937_RS13595	0.77	-0.1
3,096,791	-				+0.7
3,096,823	-		DDA3937_RS13595	0.79	+0.5
3,096,916	+		DDA3937_RS13595	0.86	-0.6
3,096,916	+		DDA3937_RS13595	0.86	+1.4
3,096,916	+		DDA3937_RS13595	0.86	-0.6
3,096,916	+		DDA3937_RS13595	0.86	-0.3
3,096,916	+		DDA3937_RS13595	0.86	-0.5
3,096,916	+		DDA3937_RS13595	0.86	+1.0
3,096,916	+		DDA3937_RS13595	0.86	-0.6
3,096,916	+		DDA3937_RS13595	0.86	-1.4
3,096,916	+		DDA3937_RS13595	0.86	+1.0
3,096,917	-		DDA3937_RS13595	0.86	+0.2
3,096,917	-		DDA3937_RS13595	0.86	-2.7
3,096,917	-		DDA3937_RS13595	0.86	+1.4
3,096,917	-		DDA3937_RS13595	0.86	-0.6
3,096,917	-		DDA3937_RS13595	0.86	+0.5
3,096,917	-		DDA3937_RS13595	0.86	-0.9
3,096,917	-		DDA3937_RS13595	0.86	-1.0
3,096,917	-				+1.7
3,096,917	-		DDA3937_RS13595	0.86	-1.3
3,096,917	-		DDA3937_RS13595	0.86	-0.3
3,096,917	-		DDA3937_RS13595	0.86	-1.3
3,096,917	-		DDA3937_RS13595	0.86	-0.8
3,096,917	-		DDA3937_RS13595	0.86	+0.4
3,096,918	+		DDA3937_RS13595	0.86	+4.1
3,096,918	+		DDA3937_RS13595	0.86	+0.7
3,096,918	+		DDA3937_RS13595	0.86	-0.3
3,096,919	-		DDA3937_RS13595	0.86	+0.2
3,096,919	-		DDA3937_RS13595	0.86	-0.4
3,096,919	-		DDA3937_RS13595	0.86	-0.3
3,096,919	-		DDA3937_RS13595	0.86	+1.5
3,096,919	-		DDA3937_RS13595	0.86	-0.4
3,096,919	-		DDA3937_RS13595	0.86	-0.7
3,096,919	-		DDA3937_RS13595	0.86	-0.3
3,096,921	+		DDA3937_RS13595	0.86	-1.4
3,096,921	+				-0.6
3,096,921	+		DDA3937_RS13595	0.86	-1.7
3,096,921	+				+1.2
3,096,921	+		DDA3937_RS13595	0.86	+0.2
3,096,921	+		DDA3937_RS13595	0.86	+0.2
3,096,921	+		DDA3937_RS13595	0.86	-0.1
3,096,921	+		DDA3937_RS13595	0.86	-0.7
3,096,921	+		DDA3937_RS13595	0.86	+0.5
3,096,922	-		DDA3937_RS13595	0.86	+1.7
3,096,922	-		DDA3937_RS13595	0.86	-0.4
3,096,922	-		DDA3937_RS13595	0.86	+0.7
3,096,922	-		DDA3937_RS13595	0.86	-1.8
3,096,922	-		DDA3937_RS13595	0.86	-1.3
3,096,922	-		DDA3937_RS13595	0.86	+0.4
3,096,922	-		DDA3937_RS13595	0.86	+0.6
3,096,922	-		DDA3937_RS13595	0.86	-0.3
3,096,922	-		DDA3937_RS13595	0.86	-0.1
3,096,922	-		DDA3937_RS13595	0.86	-0.4
3,096,922	-		DDA3937_RS13595	0.86	-1.6
3,096,922	-		DDA3937_RS13595	0.86	-1.4
3,096,942	+		DDA3937_RS13595	0.87	-0.5
3,096,942	+		DDA3937_RS13595	0.87	-1.3
3,096,942	+		DDA3937_RS13595	0.87	-0.1
3,096,942	+		DDA3937_RS13595	0.87	+0.2
3,096,943	-		DDA3937_RS13595	0.87	-0.9
3,096,971	-		DDA3937_RS13595	0.89	-1.4
3,096,972	+		DDA3937_RS13595	0.89	-0.4
3,096,972	+		DDA3937_RS13595	0.89	+0.2
3,096,972	+		DDA3937_RS13595	0.89	+3.2
3,096,972	+		DDA3937_RS13595	0.89	-1.6
3,096,973	-		DDA3937_RS13595	0.90	+0.2
3,096,973	-		DDA3937_RS13595	0.90	-0.1
3,096,973	-		DDA3937_RS13595	0.90	+0.7
3,096,973	-		DDA3937_RS13595	0.90	-1.3
3,096,978	-		DDA3937_RS13595	0.90	-1.6
3,097,085	+				-0.4
3,097,086	-				+0.6
3,097,094	-				+0.2
3,097,094	-				-1.1
3,097,096	-				-1.4
3,097,121	-				+0.3
3,097,146	+				+0.3
3,097,146	+				+0.6
3,097,147	-				-0.1
3,097,147	-				+0.7
3,097,147	-				-0.5
3,097,151	-				+0.0
3,097,151	-				-0.3
3,097,183	-				+0.7
3,097,287	+				-0.1
3,097,287	+				-0.3
3,097,288	-				-1.3
3,097,288	-				-0.3
3,097,315	-				-0.8
3,097,323	+				-0.3
3,097,324	-				-0.2
3,097,325	+				+0.5
3,097,347	+				-0.8
3,097,347	+				-0.1
3,097,348	-				-1.1
3,097,348	-				-1.3
3,097,348	-				-1.7
3,097,376	+				-1.0
3,097,376	+				-1.2
3,097,376	+				+0.5
3,097,376	+				+0.4
3,097,376	+				+1.1
3,097,377	-				-0.1
3,097,377	-				-0.3
3,097,377	-				-1.7
3,097,407	-		DDA3937_RS13600	0.12	-1.2
3,097,407	-		DDA3937_RS13600	0.12	-1.1
3,097,411	+		DDA3937_RS13600	0.13	+0.2
3,097,473	+		DDA3937_RS13600	0.29	-1.3
3,097,474	-		DDA3937_RS13600	0.30	+1.1
3,097,474	-		DDA3937_RS13600	0.30	-1.0
3,097,523	-		DDA3937_RS13600	0.43	-0.4
3,097,523	-		DDA3937_RS13600	0.43	+2.1
3,097,526	-		DDA3937_RS13600	0.43	-0.5
3,097,583	+		DDA3937_RS13600	0.58	-1.0
3,097,587	-		DDA3937_RS13600	0.60	-0.8
3,097,587	-		DDA3937_RS13600	0.60	-1.3
3,097,716	+				-0.2
3,097,768	-				-0.4
3,097,768	-				-0.7
3,097,768	-				-0.3
3,097,768	-				+0.0
3,097,771	-				-0.2
3,097,771	-				-0.1
3,097,813	+				+0.3
3,097,846	+				-0.5
3,097,847	-				+0.0
3,097,849	-				+0.5
3,097,876	+				+0.4
3,097,879	+				-0.6
3,097,880	-				+0.7
3,097,982	+				-0.4
3,097,983	-				-0.8
3,098,012	+				-0.7
3,098,019	+				-1.2
3,098,020	-				+0.2
3,098,043	-				-1.1
3,098,050	+				-1.3
3,098,098	-				-0.4
3,098,114	-				-0.6