Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13075

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,983,241	-				-1.1
2,983,241	-				-1.3
2,983,263	+				+0.7
2,983,272	-				+0.6
2,983,272	-				-1.3
2,983,316	-		DDA3937_RS13065	0.17	-0.4
2,983,316	-		DDA3937_RS13065	0.17	-0.6
2,983,321	+		DDA3937_RS13065	0.18	-0.7
2,983,322	-		DDA3937_RS13065	0.19	-1.0
2,983,386	+		DDA3937_RS13065	0.35	+0.9
2,983,386	+		DDA3937_RS13065	0.35	-1.3
2,983,387	-		DDA3937_RS13065	0.36	-0.6
2,983,387	-		DDA3937_RS13065	0.36	-0.1
2,983,438	+		DDA3937_RS13065	0.49	+0.9
2,983,546	+		DDA3937_RS13065	0.77	-0.4
2,983,546	+		DDA3937_RS13065	0.77	+0.1
2,983,688	+		DDA3937_RS13070	0.13	-2.2
2,983,688	+		DDA3937_RS13070	0.13	-0.7
2,983,688	+		DDA3937_RS13070	0.13	-1.2
2,983,689	-		DDA3937_RS13070	0.14	-0.8
2,983,689	-		DDA3937_RS13070	0.14	-0.4
2,983,699	+		DDA3937_RS13070	0.17	+1.7
2,983,699	+		DDA3937_RS13070	0.17	+0.1
2,983,699	+		DDA3937_RS13070	0.17	-1.2
2,983,699	+		DDA3937_RS13070	0.17	+0.1
2,983,699	+		DDA3937_RS13070	0.17	-1.1
2,983,700	-		DDA3937_RS13070	0.17	+1.7
2,983,700	-		DDA3937_RS13070	0.17	+0.2
2,983,700	-		DDA3937_RS13070	0.17	-0.5
2,983,700	-		DDA3937_RS13070	0.17	-1.4
2,983,931	-		DDA3937_RS13070	0.83	-0.1
2,983,967	+				-0.7
2,983,991	+				+1.2
2,983,992	-				-1.4
2,984,005	+				+0.2
2,984,040	+				+0.2
2,984,040	+				-0.3
2,984,041	-				+1.7
2,984,049	+				-0.2
2,984,049	+				-1.3
2,984,049	+				-0.3
2,984,049	+				-0.4
2,984,049	+				+0.4
2,984,050	-				-1.4
2,984,050	-				+0.2
2,984,050	-				-0.3
2,984,050	-				-1.6
2,984,050	-				-1.4
2,984,050	-				+1.4
2,984,050	-				-0.4
2,984,051	+				-0.6
2,984,051	+				+0.2
2,984,051	+				+0.9
2,984,051	+				-2.6
2,984,051	+				-0.8
2,984,051	+				-1.8
2,984,052	-				+1.7
2,984,052	-				-0.8
2,984,052	-				-0.1
2,984,052	-				-1.3
2,984,052	-				+2.9
2,984,052	-				+0.5
2,984,052	-				+0.1
2,984,052	-				+0.6
2,984,052	-				-0.5
2,984,052	-				+0.3
2,984,061	-				-2.1
2,984,061	-				-1.2
2,984,061	-				-2.6
2,984,061	-				-0.3
2,984,061	-				+1.7
2,984,061	-				-0.3
2,984,108	+				-0.7
2,984,108	+				-0.8
2,984,108	+				-0.3
2,984,108	+				-1.1
2,984,108	+				+1.2
2,984,108	+				-2.2
2,984,108	+				-0.8
2,984,108	+				+0.3
2,984,108	+				+0.9
2,984,109	-				+1.2
2,984,112	+				-0.7
2,984,112	+				+0.3
2,984,112	+				-0.3
2,984,112	+				-1.1
2,984,112	+				-0.5
2,984,113	-				-1.6
2,984,116	+				+0.9
2,984,116	+				-0.4
2,984,116	+				+1.4
2,984,116	+				+1.4
2,984,153	+				+1.0
2,984,163	+				+0.7
2,984,168	-				-1.1
2,984,172	+				-0.5
2,984,174	+				-0.4
2,984,174	+				-0.8
2,984,232	-				-1.2
2,984,232	-				-2.4
2,984,232	-				+0.5
2,984,408	+		DDA3937_RS13075	0.17	-0.1
2,984,408	+		DDA3937_RS13075	0.17	-1.1
2,984,408	+		DDA3937_RS13075	0.17	+0.1
2,984,408	+		DDA3937_RS13075	0.17	+1.5
2,984,409	-		DDA3937_RS13075	0.17	-1.3
2,984,409	-		DDA3937_RS13075	0.17	+0.4
2,984,426	+		DDA3937_RS13075	0.18	-0.3
2,984,426	+		DDA3937_RS13075	0.18	+1.1
2,984,426	+		DDA3937_RS13075	0.18	-0.8
2,984,427	-		DDA3937_RS13075	0.19	+0.7
2,984,460	+		DDA3937_RS13075	0.22	-0.6
2,984,460	+		DDA3937_RS13075	0.22	+0.4
2,984,460	+		DDA3937_RS13075	0.22	-0.4
2,984,460	+		DDA3937_RS13075	0.22	-0.2
2,984,460	+		DDA3937_RS13075	0.22	-2.5
2,984,460	+		DDA3937_RS13075	0.22	-0.5
2,984,460	+		DDA3937_RS13075	0.22	-0.4
2,984,460	+		DDA3937_RS13075	0.22	-1.4
2,984,460	+		DDA3937_RS13075	0.22	+3.1
2,984,461	-		DDA3937_RS13075	0.22	-0.1
2,984,461	-		DDA3937_RS13075	0.22	-0.3
2,984,461	-		DDA3937_RS13075	0.22	+0.3
2,984,461	-		DDA3937_RS13075	0.22	+2.0
2,984,461	-		DDA3937_RS13075	0.22	+0.3
2,984,476	+		DDA3937_RS13075	0.23	+0.3
2,984,476	+		DDA3937_RS13075	0.23	-1.4
2,984,476	+		DDA3937_RS13075	0.23	+0.7
2,984,477	-		DDA3937_RS13075	0.23	-1.8
2,984,477	-		DDA3937_RS13075	0.23	+6.0
2,984,477	-		DDA3937_RS13075	0.23	-2.3
2,984,477	-		DDA3937_RS13075	0.23	-0.7
2,984,550	+		DDA3937_RS13075	0.30	+0.9
2,984,778	+		DDA3937_RS13075	0.52	+1.4
2,984,778	+		DDA3937_RS13075	0.52	+0.3
2,984,802	+		DDA3937_RS13075	0.54	-0.7
2,984,802	+		DDA3937_RS13075	0.54	-0.1
2,984,803	-		DDA3937_RS13075	0.54	-0.8
2,984,924	+		DDA3937_RS13075	0.65	+0.7
2,984,925	-		DDA3937_RS13075	0.65	-1.3
2,984,925	-		DDA3937_RS13075	0.65	-1.2
2,985,100	-		DDA3937_RS13075	0.82	-0.4
2,985,100	-		DDA3937_RS13075	0.82	+0.7
2,985,137	+		DDA3937_RS13075	0.85	+1.0
2,985,138	-		DDA3937_RS13075	0.85	+1.7
2,985,138	-		DDA3937_RS13075	0.85	-0.7
2,985,138	-		DDA3937_RS13075	0.85	-0.7
2,985,151	-		DDA3937_RS13075	0.87	-0.8
2,985,178	-		DDA3937_RS13075	0.89	-0.5
2,985,178	-		DDA3937_RS13075	0.89	-1.8
2,985,254	+				-1.7
2,985,254	+				-1.0
2,985,254	+				+0.4
2,985,254	+				-0.1
2,985,254	+				-0.1
2,985,254	+				+0.7
2,985,255	-				-1.8
2,985,259	+				+0.3
2,985,259	+				+1.3
2,985,259	+				-0.4
2,985,260	-				+0.2
2,985,291	+				-0.3
2,985,291	+				+0.2
2,985,323	-				-0.6
2,985,347	-				+0.9
2,985,367	+				-1.6
2,985,367	+				-0.1
2,985,368	-				-1.4
2,985,371	+				-0.3
2,985,371	+				-0.6
2,985,371	+				-0.9
2,985,371	+				-0.8
2,985,371	+				-1.3
2,985,371	+				-0.3
2,985,371	+				-0.7
2,985,371	+				-1.8
2,985,372	-				+0.7
2,985,372	-				+0.7
2,985,372	-				-1.9
2,985,372	-				-0.3
2,985,372	-				-1.2
2,985,372	-				+2.1
2,985,417	+				+1.2
2,985,418	-				-1.0
2,985,418	-				-0.8
2,985,422	+				+1.7
2,985,422	+				-2.6
2,985,423	-				+0.3
2,985,480	+				-1.4
2,985,482	+				-0.1
2,985,482	+				+0.3
2,985,482	+				-0.1
2,985,483	-				-0.7
2,985,494	+				+0.5
2,985,494	+				-0.8
2,985,494	+				-1.0
2,985,495	-				-0.6
2,985,496	+				-0.5
2,985,496	+				+3.3
2,985,497	-				-0.5
2,985,510	+				-2.4
2,985,511	-				+0.3
2,985,581	+				+0.5
2,985,589	+				-1.0
2,985,589	+				-1.3
2,985,590	-				-1.0
2,985,590	-				-0.6
2,985,590	-				+0.7
2,985,901	+		DDA3937_RS13080	0.23	+0.6
2,985,901	+		DDA3937_RS13080	0.23	-0.6
2,985,901	+		DDA3937_RS13080	0.23	-0.8
2,985,902	-		DDA3937_RS13080	0.23	-0.1
2,985,902	-		DDA3937_RS13080	0.23	-1.6
2,985,902	-		DDA3937_RS13080	0.23	-0.8
2,985,904	+		DDA3937_RS13080	0.23	+0.7
2,985,904	+		DDA3937_RS13080	0.23	-1.4
2,985,904	+		DDA3937_RS13080	0.23	-1.4
2,985,904	+		DDA3937_RS13080	0.23	-0.1
2,985,904	+		DDA3937_RS13080	0.23	-1.3
2,985,904	+		DDA3937_RS13080	0.23	-2.8
2,985,905	-		DDA3937_RS13080	0.23	+0.2
2,985,905	-		DDA3937_RS13080	0.23	-1.0
2,985,916	+		DDA3937_RS13080	0.24	-1.3
2,985,917	-				+0.7
2,985,917	-		DDA3937_RS13080	0.24	-2.0
2,985,969	+		DDA3937_RS13080	0.28	-1.1
2,985,970	-		DDA3937_RS13080	0.28	-0.2
2,986,028	+		DDA3937_RS13080	0.32	-0.8
2,986,029	-		DDA3937_RS13080	0.32	-1.1
2,986,029	-		DDA3937_RS13080	0.32	+0.4
2,986,072	+		DDA3937_RS13080	0.35	-0.5
2,986,072	+		DDA3937_RS13080	0.35	-0.6
2,986,072	+		DDA3937_RS13080	0.35	-0.1
2,986,072	+		DDA3937_RS13080	0.35	+1.2
2,986,072	+		DDA3937_RS13080	0.35	-0.3
2,986,073	-		DDA3937_RS13080	0.35	-1.0
2,986,073	-		DDA3937_RS13080	0.35	-1.4
2,986,073	-		DDA3937_RS13080	0.35	-0.3
2,986,073	-		DDA3937_RS13080	0.35	+1.0
2,986,073	-		DDA3937_RS13080	0.35	+1.7
2,986,073	-		DDA3937_RS13080	0.35	+0.0
2,986,073	-		DDA3937_RS13080	0.35	-0.8
2,986,109	+		DDA3937_RS13080	0.37	-2.2
2,986,109	+		DDA3937_RS13080	0.37	-1.3
2,986,110	-		DDA3937_RS13080	0.37	-1.6
2,986,231	+		DDA3937_RS13080	0.46	-0.1
2,986,231	+		DDA3937_RS13080	0.46	+0.1
2,986,231	+		DDA3937_RS13080	0.46	-0.3
2,986,231	+		DDA3937_RS13080	0.46	+0.6
2,986,231	+		DDA3937_RS13080	0.46	-0.5
2,986,231	+		DDA3937_RS13080	0.46	+0.7
2,986,231	+		DDA3937_RS13080	0.46	-0.6
2,986,231	+		DDA3937_RS13080	0.46	+0.2
2,986,231	+		DDA3937_RS13080	0.46	-0.8
2,986,231	+		DDA3937_RS13080	0.46	-2.6
2,986,231	+		DDA3937_RS13080	0.46	+0.9
2,986,232	-		DDA3937_RS13080	0.46	-0.7
2,986,232	-		DDA3937_RS13080	0.46	-0.5
2,986,286	+		DDA3937_RS13080	0.50	-3.0
2,986,287	-		DDA3937_RS13080	0.50	+1.0
2,986,287	-		DDA3937_RS13080	0.50	-0.3
2,986,288	+		DDA3937_RS13080	0.50	-0.8
2,986,288	+		DDA3937_RS13080	0.50	+0.9
2,986,288	+		DDA3937_RS13080	0.50	-0.6
2,986,289	-		DDA3937_RS13080	0.50	+0.0
2,986,289	-		DDA3937_RS13080	0.50	+0.7
2,986,289	-		DDA3937_RS13080	0.50	-0.0
2,986,289	-		DDA3937_RS13080	0.50	-1.8
2,986,289	-		DDA3937_RS13080	0.50	+0.2
2,986,289	-		DDA3937_RS13080	0.50	+0.3