Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12965

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,956,826	-		DDA3937_RS12955	0.55	+1.7
2,956,889	+		DDA3937_RS12955	0.63	-0.1
2,956,890	-		DDA3937_RS12955	0.63	-3.1
2,956,937	+		DDA3937_RS12955	0.69	+1.2
2,956,937	+		DDA3937_RS12955	0.69	-1.0
2,956,937	+		DDA3937_RS12955	0.69	+0.7
2,956,938	-		DDA3937_RS12955	0.70	-2.3
2,956,938	-		DDA3937_RS12955	0.70	-1.3
2,957,073	+		DDA3937_RS12955	0.87	+0.3
2,957,073	+		DDA3937_RS12955	0.87	+0.1
2,957,074	-		DDA3937_RS12955	0.87	+1.3
2,957,137	-				+0.4
2,957,137	-				-0.4
2,957,151	-				-0.9
2,957,176	+				-0.9
2,957,176	+				+1.2
2,957,232	-		DDA3937_RS12960	0.10	+1.7
2,957,251	-		DDA3937_RS12960	0.14	+0.6
2,957,348	-		DDA3937_RS12960	0.31	+1.6
2,957,358	-		DDA3937_RS12960	0.33	-0.8
2,957,404	+		DDA3937_RS12960	0.41	-1.6
2,957,404	+		DDA3937_RS12960	0.41	-1.1
2,957,404	+		DDA3937_RS12960	0.41	+0.2
2,957,404	+		DDA3937_RS12960	0.41	-0.1
2,957,405	-		DDA3937_RS12960	0.42	+0.4
2,957,405	-		DDA3937_RS12960	0.42	-1.6
2,957,450	+		DDA3937_RS12960	0.50	-1.2
2,957,460	+		DDA3937_RS12960	0.52	-1.1
2,957,460	+		DDA3937_RS12960	0.52	-0.6
2,957,461	-		DDA3937_RS12960	0.52	+2.0
2,957,461	-		DDA3937_RS12960	0.52	+2.5
2,957,461	-		DDA3937_RS12960	0.52	+0.1
2,957,569	+		DDA3937_RS12960	0.71	+0.4
2,957,569	+		DDA3937_RS12960	0.71	-0.1
2,957,569	+		DDA3937_RS12960	0.71	-0.8
2,957,570	-		DDA3937_RS12960	0.72	-0.8
2,957,600	-		DDA3937_RS12960	0.77	+1.4
2,957,600	-		DDA3937_RS12960	0.77	+0.7
2,957,651	+		DDA3937_RS12960	0.86	+0.1
2,957,651	+		DDA3937_RS12960	0.86	-1.0
2,957,652	-		DDA3937_RS12960	0.86	+0.6
2,957,710	+				+0.2
2,957,711	-				-0.7
2,957,711	-				+0.4
2,957,711	-				-0.7
2,957,713	-				-0.6
2,957,717	+				-0.3
2,957,717	+				-0.4
2,957,718	-				-0.6
2,957,718	-				+0.8
2,957,718	-				+1.2
2,957,718	-				-1.1
2,957,785	+				-1.3
2,957,785	+				+0.0
2,957,785	+				-1.2
2,957,785	+				-0.3
2,957,785	+				-1.7
2,957,785	+				-0.1
2,957,786	-				-0.3
2,957,786	-				-1.5
2,957,802	-				+0.2
2,957,802	-				-0.1
2,957,802	-				-1.8
2,957,830	-				-0.9
2,957,907	+		DDA3937_RS12965	0.11	-0.6
2,957,956	+		DDA3937_RS12965	0.16	+0.5
2,957,956	+		DDA3937_RS12965	0.16	-0.1
2,957,956	+		DDA3937_RS12965	0.16	-0.5
2,957,956	+		DDA3937_RS12965	0.16	-1.4
2,957,956	+		DDA3937_RS12965	0.16	-0.3
2,957,956	+		DDA3937_RS12965	0.16	-0.6
2,957,956	+		DDA3937_RS12965	0.16	+1.7
2,957,956	+		DDA3937_RS12965	0.16	+0.2
2,957,956	+		DDA3937_RS12965	0.16	+0.5
2,957,957	-		DDA3937_RS12965	0.16	-1.1
2,957,957	-		DDA3937_RS12965	0.16	-1.6
2,957,957	-				-0.6
2,957,961	-		DDA3937_RS12965	0.16	+1.0
2,958,252	-		DDA3937_RS12965	0.45	+0.1
2,958,252	-		DDA3937_RS12965	0.45	-1.8
2,958,252	-		DDA3937_RS12965	0.45	-0.7
2,958,287	+		DDA3937_RS12965	0.49	-1.4
2,958,287	+		DDA3937_RS12965	0.49	+0.7
2,958,287	+		DDA3937_RS12965	0.49	+0.7
2,958,312	+		DDA3937_RS12965	0.51	-0.1
2,958,312	+		DDA3937_RS12965	0.51	-2.0
2,958,313	-		DDA3937_RS12965	0.51	+0.6
2,958,313	-		DDA3937_RS12965	0.51	-0.6
2,958,318	+		DDA3937_RS12965	0.52	-0.4
2,958,318	+		DDA3937_RS12965	0.52	-0.1
2,958,318	+		DDA3937_RS12965	0.52	+0.5
2,958,319	-		DDA3937_RS12965	0.52	-2.2
2,958,319	-		DDA3937_RS12965	0.52	+1.0
2,958,319	-		DDA3937_RS12965	0.52	-0.1
2,958,502	+		DDA3937_RS12965	0.70	+3.3
2,958,502	+		DDA3937_RS12965	0.70	-1.1
2,958,777	+				-1.5
2,958,778	-				-0.0
2,958,778	-				+0.3
2,958,913	+				-0.8
2,958,913	+				+1.2
2,958,914	-				-1.3
2,958,914	-				-1.1
2,958,914	-				+1.1
2,958,914	-				-0.5
2,958,914	-				+0.1
2,958,932	+				-0.7
2,958,932	+				-0.6
2,958,933	-				+0.4
2,958,933	-				-2.1
2,958,933	-				+3.9
2,958,933	-				-1.4
2,958,975	+				-0.8
2,958,975	+				-0.8
2,958,975	+				-0.6
2,958,975	+				-0.8
2,958,975	+				+0.5
2,958,975	+				-1.1
2,958,976	-				+0.3
2,958,976	-				+0.5
2,958,976	-				-0.1
2,958,976	-				-0.4
2,958,976	-				+1.2
2,958,976	-				-0.1
2,958,976	-				-1.1
2,958,988	+				-0.3
2,958,988	+				+0.3
2,958,988	+				-1.0
2,958,988	+				-1.6
2,958,988	+				-0.6
2,958,988	+				+0.6
2,958,989	-				+1.0
2,958,989	-				+0.7
2,958,989	-				+0.2
2,959,038	+				-0.8
2,959,040	+				-0.1
2,959,040	+				-1.2
2,959,040	+				-0.5
2,959,040	+				+0.3
2,959,040	+				+0.4
2,959,040	+				-1.5
2,959,040	+				+0.7
2,959,040	+				+0.6
2,959,040	+				-0.5
2,959,040	+				-0.3
2,959,041	-				-0.6
2,959,041	-				+0.4
2,959,041	-				-1.1
2,959,041	-				+0.2
2,959,041	-				-1.3
2,959,041	-				+0.7
2,959,041	-				+1.5
2,959,041	-				+0.7
2,959,044	+				+0.0
2,959,044	+				-0.8
2,959,044	+				-0.6
2,959,044	+				-1.0
2,959,044	+				+0.4
2,959,044	+				+1.7
2,959,044	+				+0.2
2,959,044	+				-0.6
2,959,045	-				-0.1
2,959,045	-				-0.3
2,959,045	-				-0.6
2,959,045	-				-2.2
2,959,045	-				-0.2
2,959,045	-				+0.4
2,959,045	-				-0.3
2,959,046	+				-0.3
2,959,046	+				-1.3
2,959,046	+				-0.6
2,959,046	+				+0.7
2,959,046	+				-1.7
2,959,046	+				-0.9
2,959,047	-				+0.2
2,959,047	-				-0.2
2,959,047	-				-0.5
2,959,047	-				-1.0
2,959,047	-				-0.3
2,959,047	-				-1.3
2,959,047	-				+0.4
2,959,047	-				+1.2
2,959,066	+				+0.2
2,959,067	-				+0.4
2,959,069	+				-1.1
2,959,069	+				-1.1
2,959,070	-				+0.4
2,959,105	+				+3.2
2,959,106	-				+1.1
2,959,133	+		DDA3937_RS12970	0.11	+0.1
2,959,199	+		DDA3937_RS12970	0.36	+0.4
2,959,199	+		DDA3937_RS12970	0.36	-0.5
2,959,199	+		DDA3937_RS12970	0.36	+0.2
2,959,200	-		DDA3937_RS12970	0.37	-0.4
2,959,208	+		DDA3937_RS12970	0.40	-0.2
2,959,208	+		DDA3937_RS12970	0.40	-0.6
2,959,208	+		DDA3937_RS12970	0.40	+0.9
2,959,208	+		DDA3937_RS12970	0.40	-1.2
2,959,208	+		DDA3937_RS12970	0.40	-0.5
2,959,208	+		DDA3937_RS12970	0.40	-0.8
2,959,209	-		DDA3937_RS12970	0.40	-0.8
2,959,209	-		DDA3937_RS12970	0.40	-0.3
2,959,209	-		DDA3937_RS12970	0.40	+0.3
2,959,209	-		DDA3937_RS12970	0.40	+5.2
2,959,209	-		DDA3937_RS12970	0.40	+0.7
2,959,209	-		DDA3937_RS12970	0.40	-0.3
2,959,428	+				-0.4
2,959,428	+				+0.0
2,959,428	+				+2.6
2,959,428	+				-0.2
2,959,428	+				-0.6
2,959,429	-				-1.1
2,959,429	-				+2.8
2,959,429	-				+1.7
2,959,429	-				-0.1
2,959,429	-				-0.8
2,959,429	-				+0.3
2,959,429	-				-0.4
2,959,429	-				-0.3
2,959,429	-				-0.3
2,959,486	+		DDA3937_RS12975	0.16	-0.0
2,959,486	+		DDA3937_RS12975	0.16	-2.6
2,959,486	+		DDA3937_RS12975	0.16	-0.3
2,959,486	+		DDA3937_RS12975	0.16	-0.3
2,959,486	+		DDA3937_RS12975	0.16	+0.7
2,959,486	+		DDA3937_RS12975	0.16	-0.7
2,959,486	+		DDA3937_RS12975	0.16	+0.4
2,959,486	+		DDA3937_RS12975	0.16	-0.7
2,959,486	+		DDA3937_RS12975	0.16	-2.5
2,959,486	+		DDA3937_RS12975	0.16	+0.5
2,959,486	+		DDA3937_RS12975	0.16	+0.3
2,959,486	+		DDA3937_RS12975	0.16	-1.0
2,959,486	+		DDA3937_RS12975	0.16	-0.6
2,959,487	-		DDA3937_RS12975	0.16	-1.0
2,959,487	-		DDA3937_RS12975	0.16	-0.6
2,959,487	-		DDA3937_RS12975	0.16	+0.4
2,959,487	-		DDA3937_RS12975	0.16	-0.5
2,959,487	-		DDA3937_RS12975	0.16	-2.1
2,959,487	-		DDA3937_RS12975	0.16	-2.0
2,959,487	-		DDA3937_RS12975	0.16	-0.4
2,959,590	+		DDA3937_RS12975	0.29	+0.8
2,959,590	+		DDA3937_RS12975	0.29	+0.2
2,959,590	+		DDA3937_RS12975	0.29	-0.4
2,959,591	-		DDA3937_RS12975	0.29	-0.7
2,959,591	-		DDA3937_RS12975	0.29	-1.3
2,959,591	-		DDA3937_RS12975	0.29	+1.0
2,959,591	-		DDA3937_RS12975	0.29	+1.3
2,959,765	+		DDA3937_RS12975	0.50	-1.6
2,959,765	+		DDA3937_RS12975	0.50	+0.2
2,959,765	+		DDA3937_RS12975	0.50	-0.7
2,959,765	+		DDA3937_RS12975	0.50	+0.4
2,959,765	+				+0.4
2,959,766	-		DDA3937_RS12975	0.50	-0.4