Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12475

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,838,167	+		DDA3937_RS12470	0.22	-0.3
2,838,167	+		DDA3937_RS12470	0.22	-0.6
2,838,168	-		DDA3937_RS12470	0.22	-1.1
2,838,168	-		DDA3937_RS12470	0.22	-0.9
2,838,168	-		DDA3937_RS12470	0.22	+0.1
2,838,168	-		DDA3937_RS12470	0.22	+2.7
2,838,168	-				-0.3
2,838,168	-		DDA3937_RS12470	0.22	-0.6
2,838,168	-		DDA3937_RS12470	0.22	+1.4
2,838,168	-		DDA3937_RS12470	0.22	-0.9
2,838,179	+		DDA3937_RS12470	0.23	-0.1
2,838,180	-		DDA3937_RS12470	0.23	-0.3
2,838,180	-		DDA3937_RS12470	0.23	+0.9
2,838,210	-		DDA3937_RS12470	0.26	+0.3
2,838,252	+		DDA3937_RS12470	0.31	-0.6
2,838,253	-		DDA3937_RS12470	0.31	-1.5
2,838,295	+		DDA3937_RS12470	0.36	+2.1
2,838,360	+		DDA3937_RS12470	0.43	-0.9
2,838,361	-		DDA3937_RS12470	0.43	+2.4
2,838,361	-		DDA3937_RS12470	0.43	-0.1
2,838,361	-		DDA3937_RS12470	0.43	+0.3
2,838,361	-		DDA3937_RS12470	0.43	-0.1
2,838,361	-		DDA3937_RS12470	0.43	+0.5
2,838,361	-		DDA3937_RS12470	0.43	-0.7
2,838,467	-		DDA3937_RS12470	0.55	+0.0
2,838,503	+		DDA3937_RS12470	0.59	-0.0
2,838,504	-		DDA3937_RS12470	0.59	-1.3
2,838,510	+		DDA3937_RS12470	0.60	+0.0
2,838,548	+		DDA3937_RS12470	0.64	+0.4
2,838,590	-		DDA3937_RS12470	0.69	-0.5
2,838,590	-		DDA3937_RS12470	0.69	-0.1
2,838,648	+		DDA3937_RS12470	0.75	-1.2
2,838,648	+		DDA3937_RS12470	0.75	-0.4
2,838,648	+		DDA3937_RS12470	0.75	-0.8
2,838,648	+		DDA3937_RS12470	0.75	-0.3
2,838,649	-		DDA3937_RS12470	0.75	+0.0
2,838,649	-		DDA3937_RS12470	0.75	-1.1
2,838,849	+				-0.1
2,838,850	-				-0.1
2,838,850	-				+0.1
2,838,853	+				-0.9
2,838,853	+				-0.5
2,838,854	-				-2.5
2,838,854	-				-0.1
2,838,854	-				+0.4
2,838,854	-				-1.1
2,838,902	+				+0.2
2,838,902	+				+0.7
2,838,903	-				-2.8
2,838,903	-				-1.0
2,838,904	+				-1.5
2,838,904	+				-1.3
2,838,904	+				-1.1
2,838,904	+				-0.3
2,838,904	+				-0.3
2,838,904	+				-1.1
2,838,905	-				-0.6
2,838,905	-				-0.3
2,838,905	-				-0.9
2,838,905	-				+0.9
2,838,905	-				-0.4
2,838,905	-				+0.1
2,838,949	+				-0.6
2,838,950	-				-2.0
2,838,950	-				+0.3
2,838,958	-				+1.9
2,839,004	+				-0.2
2,839,004	+				-2.0
2,839,005	-				-1.1
2,839,005	-				+2.5
2,839,005	-				-0.1
2,839,005	-				-1.4
2,839,005	-				-1.9
2,839,008	+				-0.9
2,839,008	+				-0.9
2,839,036	-				-0.9
2,839,036	-				+1.1
2,839,036	-				-1.1
2,839,039	+				-0.1
2,839,040	-				+1.4
2,839,042	+				-1.1
2,839,043	-				-0.7
2,839,043	-				-0.1
2,839,043	-				-0.5
2,839,099	-				-0.3
2,839,203	-				-0.5
2,839,374	+		DDA3937_RS12475	0.13	-0.1
2,839,386	+		DDA3937_RS12475	0.14	-0.6
2,839,437	+		DDA3937_RS12475	0.16	+0.1
2,839,437	+				-0.6
2,839,437	+				+0.7
2,839,437	+		DDA3937_RS12475	0.16	-1.1
2,839,437	+		DDA3937_RS12475	0.16	-0.9
2,839,438	-		DDA3937_RS12475	0.16	-1.1
2,839,438	-		DDA3937_RS12475	0.16	+0.6
2,839,438	-		DDA3937_RS12475	0.16	-0.6
2,839,521	+		DDA3937_RS12475	0.19	-0.8
2,839,522	-		DDA3937_RS12475	0.20	-0.0
2,839,523	+		DDA3937_RS12475	0.20	-0.4
2,839,523	+		DDA3937_RS12475	0.20	-0.3
2,839,524	-		DDA3937_RS12475	0.20	-0.2
2,839,541	+		DDA3937_RS12475	0.20	+2.1
2,839,554	+		DDA3937_RS12475	0.21	-1.6
2,839,554	+		DDA3937_RS12475	0.21	+0.7
2,839,554	+		DDA3937_RS12475	0.21	-0.9
2,839,554	+		DDA3937_RS12475	0.21	-0.1
2,839,554	+		DDA3937_RS12475	0.21	+0.4
2,839,555	-		DDA3937_RS12475	0.21	-1.0
2,839,555	-		DDA3937_RS12475	0.21	-1.1
2,839,555	-		DDA3937_RS12475	0.21	-0.6
2,839,555	-		DDA3937_RS12475	0.21	+1.7
2,839,555	-		DDA3937_RS12475	0.21	-0.4
2,839,555	-		DDA3937_RS12475	0.21	+0.1
2,839,555	-		DDA3937_RS12475	0.21	-1.2
2,839,560	+		DDA3937_RS12475	0.21	-0.4
2,839,561	-		DDA3937_RS12475	0.21	+0.4
2,839,561	-		DDA3937_RS12475	0.21	+1.7
2,839,561	-		DDA3937_RS12475	0.21	+0.1
2,839,561	-		DDA3937_RS12475	0.21	+0.5
2,839,578	-		DDA3937_RS12475	0.22	+0.0
2,839,676	-		DDA3937_RS12475	0.26	-2.0
2,839,748	+		DDA3937_RS12475	0.29	-1.5
2,839,748	+		DDA3937_RS12475	0.29	-1.1
2,839,748	+		DDA3937_RS12475	0.29	+0.5
2,839,749	-		DDA3937_RS12475	0.29	-0.8
2,839,790	+		DDA3937_RS12475	0.31	-1.6
2,840,015	+		DDA3937_RS12475	0.41	+0.7
2,840,015	+		DDA3937_RS12475	0.41	+0.0
2,840,016	-		DDA3937_RS12475	0.41	+0.9
2,840,028	-		DDA3937_RS12475	0.41	-1.3
2,840,028	-		DDA3937_RS12475	0.41	-1.6
2,840,028	-		DDA3937_RS12475	0.41	+0.5
2,840,046	+		DDA3937_RS12475	0.42	-1.5
2,840,047	-		DDA3937_RS12475	0.42	-1.1
2,840,137	-		DDA3937_RS12475	0.46	+0.5
2,840,137	-		DDA3937_RS12475	0.46	-1.3
2,840,137	-		DDA3937_RS12475	0.46	-1.8
2,840,296	+		DDA3937_RS12475	0.53	-0.5
2,840,296	+		DDA3937_RS12475	0.53	+1.2
2,840,297	-		DDA3937_RS12475	0.53	+0.2
2,840,297	-				+0.1
2,840,297	-		DDA3937_RS12475	0.53	-0.7
2,840,407	+		DDA3937_RS12475	0.58	-0.9
2,840,407	+		DDA3937_RS12475	0.58	-1.5
2,840,408	-		DDA3937_RS12475	0.58	-2.2
2,840,585	+		DDA3937_RS12475	0.66	-1.3
2,840,585	+		DDA3937_RS12475	0.66	-0.4
2,840,585	+		DDA3937_RS12475	0.66	+4.0
2,840,586	-		DDA3937_RS12475	0.66	+0.6
2,840,586	-		DDA3937_RS12475	0.66	-0.3
2,840,650	+		DDA3937_RS12475	0.68	-0.4
2,840,805	+		DDA3937_RS12475	0.75	-0.8
2,840,805	+		DDA3937_RS12475	0.75	-1.4
2,840,805	+		DDA3937_RS12475	0.75	-0.3
2,840,805	+		DDA3937_RS12475	0.75	+0.1
2,840,805	+		DDA3937_RS12475	0.75	+2.9
2,840,805	+		DDA3937_RS12475	0.75	-0.0
2,840,806	-		DDA3937_RS12475	0.75	-1.3
2,840,806	-		DDA3937_RS12475	0.75	-0.3
2,840,806	-		DDA3937_RS12475	0.75	-1.6
2,840,807	+		DDA3937_RS12475	0.75	-1.1
2,840,807	+		DDA3937_RS12475	0.75	-0.4
2,841,039	+		DDA3937_RS12475	0.85	-1.0
2,841,040	-		DDA3937_RS12475	0.85	-0.4
2,841,040	-		DDA3937_RS12475	0.85	-0.1
2,841,055	-		DDA3937_RS12475	0.86	-1.6
2,841,084	+		DDA3937_RS12475	0.87	-0.5
2,841,085	-		DDA3937_RS12475	0.87	-0.3
2,841,222	+				-2.4
2,841,252	+				+0.1
2,841,252	+				+0.7
2,841,253	-				-0.6
2,841,253	-				-0.8
2,841,253	-				-0.3
2,841,256	-				-1.5
2,841,291	+				+1.0
2,841,291	+				-0.0
2,841,341	+				+0.5
2,841,342	-				-0.7
2,841,372	-				+0.5
2,841,372	-				-0.3
2,841,430	-				-1.7
2,841,430	-				-1.3
2,841,435	+				-1.3
2,841,435	+				+1.1
2,841,435	+				-1.5
2,841,436	-				+0.6
2,841,436	-				-1.1
2,841,436	-				-0.1
2,841,470	+				+2.1
2,841,477	+				-0.9
2,841,477	+				-0.2
2,841,508	+				+0.4
2,841,508	+				+0.9
2,841,523	+				-0.5
2,841,523	+				-0.3
2,841,744	+				-0.3
2,841,815	-		DDA3937_RS12485	0.15	+0.4
2,841,834	+		DDA3937_RS12485	0.19	+1.1
2,841,856	+		DDA3937_RS12485	0.23	+1.4
2,841,857	-		DDA3937_RS12485	0.23	+0.8
2,841,857	-				-0.3
2,841,933	-		DDA3937_RS12485	0.39	-2.4
2,841,940	+		DDA3937_RS12485	0.41	-1.1
2,841,941	-		DDA3937_RS12485	0.41	+2.3
2,841,950	-		DDA3937_RS12485	0.43	-0.3
2,842,075	+		DDA3937_RS12485	0.69	-2.3
2,842,075	+		DDA3937_RS12485	0.69	+0.5
2,842,084	+		DDA3937_RS12485	0.71	+0.1
2,842,084	+		DDA3937_RS12485	0.71	-1.0
2,842,085	-		DDA3937_RS12485	0.72	+0.3
2,842,085	-		DDA3937_RS12485	0.72	+0.5
2,842,085	-		DDA3937_RS12485	0.72	-2.9
2,842,085	-		DDA3937_RS12485	0.72	-0.3
2,842,089	+		DDA3937_RS12485	0.72	-2.8
2,842,089	+		DDA3937_RS12485	0.72	+0.4
2,842,089	+		DDA3937_RS12485	0.72	+0.3
2,842,089	+		DDA3937_RS12485	0.72	-0.4
2,842,128	+		DDA3937_RS12485	0.81	-0.6
2,842,128	+		DDA3937_RS12485	0.81	-0.6
2,842,128	+		DDA3937_RS12485	0.81	-0.1
2,842,128	+		DDA3937_RS12485	0.81	-1.9
2,842,128	+		DDA3937_RS12485	0.81	+1.1
2,842,129	-		DDA3937_RS12485	0.81	-1.8
2,842,129	-		DDA3937_RS12485	0.81	-1.0
2,842,129	-		DDA3937_RS12485	0.81	-0.7
2,842,129	-		DDA3937_RS12485	0.81	+1.7
2,842,129	-		DDA3937_RS12485	0.81	-0.3
2,842,129	-		DDA3937_RS12485	0.81	-0.8
2,842,144	-		DDA3937_RS12485	0.84	-0.3
2,842,158	+		DDA3937_RS12485	0.87	-0.1
2,842,272	+				-0.5
2,842,272	+				-0.0
2,842,339	+				-0.6
2,842,340	-				+1.6
2,842,340	-				+0.7
2,842,340	-				-0.8
2,842,361	+				-0.5
2,842,361	+				+1.7
2,842,362	-				-1.2