Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11835

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,688,524	+		DDA3937_RS11830	0.34	+0.1
2,688,586	+		DDA3937_RS11830	0.39	+0.6
2,688,594	+		DDA3937_RS11830	0.39	+0.7
2,688,594	+		DDA3937_RS11830	0.39	+0.6
2,688,595	-				+1.6
2,688,595	-		DDA3937_RS11830	0.39	+0.0
2,688,595	-		DDA3937_RS11830	0.39	-0.3
2,688,595	-		DDA3937_RS11830	0.39	+0.2
2,688,597	+		DDA3937_RS11830	0.40	-1.0
2,688,598	-		DDA3937_RS11830	0.40	-0.4
2,688,669	+		DDA3937_RS11830	0.45	-0.7
2,688,670	-		DDA3937_RS11830	0.45	-0.6
2,688,670	-		DDA3937_RS11830	0.45	+2.6
2,688,670	-		DDA3937_RS11830	0.45	-1.7
2,688,824	+		DDA3937_RS11830	0.58	+1.4
2,688,824	+		DDA3937_RS11830	0.58	-0.6
2,688,825	-		DDA3937_RS11830	0.58	-0.2
2,688,941	-		DDA3937_RS11830	0.67	-0.0
2,688,989	-		DDA3937_RS11830	0.71	-0.2
2,688,989	-		DDA3937_RS11830	0.71	-1.4
2,689,107	+		DDA3937_RS11830	0.80	-0.4
2,689,107	+		DDA3937_RS11830	0.80	-0.2
2,689,107	+		DDA3937_RS11830	0.80	+0.2
2,689,107	+		DDA3937_RS11830	0.80	+0.0
2,689,108	-		DDA3937_RS11830	0.80	+1.3
2,689,108	-		DDA3937_RS11830	0.80	+1.9
2,689,108	-		DDA3937_RS11830	0.80	-1.5
2,689,235	-				+1.0
2,689,236	+				-0.8
2,689,237	-				+0.8
2,689,237	-				-1.2
2,689,361	+				-1.2
2,689,426	+				-2.0
2,689,426	+				+0.0
2,689,427	-				+0.5
2,689,427	-				-2.9
2,689,427	-				-1.1
2,689,430	+				-1.2
2,689,430	+				+1.4
2,689,430	+				-0.7
2,689,447	+				-0.7
2,689,471	-				+0.0
2,689,562	+				-0.3
2,689,562	+				-1.4
2,689,562	+				-1.5
2,689,663	+		DDA3937_RS11835	0.12	-0.8
2,689,663	+		DDA3937_RS11835	0.12	+0.0
2,689,704	-		DDA3937_RS11835	0.15	-0.7
2,689,704	-		DDA3937_RS11835	0.15	+0.5
2,689,704	-		DDA3937_RS11835	0.15	-0.5
2,689,704	-		DDA3937_RS11835	0.15	+3.3
2,689,733	+		DDA3937_RS11835	0.17	+0.8
2,689,734	-		DDA3937_RS11835	0.17	-1.4
2,689,979	+		DDA3937_RS11835	0.33	+0.7
2,689,980	-		DDA3937_RS11835	0.33	-1.4
2,689,980	-		DDA3937_RS11835	0.33	-0.5
2,690,027	+		DDA3937_RS11835	0.36	+1.6
2,690,028	-		DDA3937_RS11835	0.36	-0.7
2,690,469	-		DDA3937_RS11835	0.66	-0.9
2,690,469	-		DDA3937_RS11835	0.66	+2.3
2,690,495	+		DDA3937_RS11835	0.68	+0.9
2,690,516	+		DDA3937_RS11835	0.69	+1.6
2,690,516	+		DDA3937_RS11835	0.69	+0.3
2,690,516	+		DDA3937_RS11835	0.69	-1.8
2,690,516	+		DDA3937_RS11835	0.69	+1.3
2,690,516	+		DDA3937_RS11835	0.69	-0.1
2,690,516	+		DDA3937_RS11835	0.69	-1.2
2,690,516	+		DDA3937_RS11835	0.69	+0.6
2,690,517	-		DDA3937_RS11835	0.69	-0.9
2,690,517	-		DDA3937_RS11835	0.69	-2.3
2,690,517	-		DDA3937_RS11835	0.69	+0.4
2,690,517	-		DDA3937_RS11835	0.69	-0.4
2,690,517	-		DDA3937_RS11835	0.69	-0.7
2,690,517	-		DDA3937_RS11835	0.69	-0.6
2,690,571	+		DDA3937_RS11835	0.73	+0.3
2,690,571	+		DDA3937_RS11835	0.73	-1.8
2,690,571	+		DDA3937_RS11835	0.73	+0.2
2,690,572	-		DDA3937_RS11835	0.73	-1.1
2,690,574	-		DDA3937_RS11835	0.73	-1.2
2,690,601	+		DDA3937_RS11835	0.75	-1.2
2,690,601	+		DDA3937_RS11835	0.75	+0.6
2,690,634	-		DDA3937_RS11835	0.77	-1.3
2,690,666	+		DDA3937_RS11835	0.79	+2.6
2,690,666	+		DDA3937_RS11835	0.79	-0.5
2,690,666	+		DDA3937_RS11835	0.79	-1.3
2,690,723	+		DDA3937_RS11835	0.83	+1.7
2,690,724	-		DDA3937_RS11835	0.83	-0.2
2,690,732	+		DDA3937_RS11835	0.84	-0.5
2,690,732	+		DDA3937_RS11835	0.84	+1.0
2,690,733	-		DDA3937_RS11835	0.84	-2.1
2,690,733	-		DDA3937_RS11835	0.84	-0.6
2,690,733	-		DDA3937_RS11835	0.84	-0.4
2,690,740	+		DDA3937_RS11835	0.84	+0.0
2,690,846	+				-1.0
2,690,847	-				+0.1
2,690,850	-				+1.6
2,690,850	-				-0.7
2,690,850	-				-0.6
2,690,888	+				-1.4
2,690,931	+				+0.3
2,691,083	+				+0.2
2,691,084	-				-0.5
2,691,096	-				-0.7
2,691,096	-				-2.1
2,691,113	+				-1.8
2,691,114	-				-1.0
2,691,114	-				+0.0
2,691,146	+				+0.4
2,691,146	+				+0.0
2,691,146	+				-2.0
2,691,146	+				-0.7
2,691,146	+				-2.2
2,691,146	+				-0.3
2,691,147	-				+0.4
2,691,147	-				+1.5
2,691,147	-				-1.0
2,691,180	+				-1.6
2,691,202	+				+2.4
2,691,203	-				+1.2
2,691,203	-				-1.8
2,691,250	-				-0.4
2,691,281	+				-0.7
2,691,281	+				+0.2
2,691,282	-				-1.0
2,691,282	-				-0.7
2,691,282	-				-0.2
2,691,285	-				+0.2
2,691,288	-				-0.2
2,691,293	+				-0.4
2,691,294	-				-0.2
2,691,294	-				-0.2
2,691,323	+				-1.7
2,691,323	+				+1.6
2,691,323	+				-0.6
2,691,324	-				-0.8
2,691,324	-				-2.2
2,691,324	-				+1.6
2,691,329	+				-0.9
2,691,329	+				-1.2
2,691,330	-				-0.4
2,691,330	-				-1.0
2,691,330	-				+0.4
2,691,333	+				+1.2
2,691,333	+				-0.2
2,691,334	-				-0.7
2,691,334	-				-1.4
2,691,334	-				-0.7
2,691,334	-				+0.4
2,691,386	-				-1.6
2,691,386	-				-0.4
2,691,386	-				-2.0
2,691,415	+				-0.4
2,691,616	-		DDA3937_RS11840	0.22	+1.1
2,691,631	+		DDA3937_RS11840	0.23	-0.4
2,691,631	+		DDA3937_RS11840	0.23	-0.6
2,691,631	+		DDA3937_RS11840	0.23	-2.1
2,691,631	+		DDA3937_RS11840	0.23	+0.2
2,691,632	-		DDA3937_RS11840	0.23	-1.4
2,691,946	+		DDA3937_RS11840	0.52	+0.4
2,691,946	+		DDA3937_RS11840	0.52	-0.4
2,691,947	-		DDA3937_RS11840	0.52	-0.1
2,691,947	-		DDA3937_RS11840	0.52	+1.0
2,691,947	-		DDA3937_RS11840	0.52	+1.6