Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10050

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,266,714	-		DDA3937_RS10040	0.76	+2.2
2,266,768	+		DDA3937_RS10040	0.83	-0.6
2,266,769	-		DDA3937_RS10040	0.83	-1.9
2,266,769	-		DDA3937_RS10040	0.83	+0.6
2,266,769	-		DDA3937_RS10040	0.83	-0.8
2,266,769	-		DDA3937_RS10040	0.83	+0.9
2,266,769	-		DDA3937_RS10040	0.83	+1.6
2,266,779	+		DDA3937_RS10040	0.84	-0.7
2,266,894	+				-1.2
2,266,894	+				-0.8
2,266,894	+				-0.4
2,266,894	+				-1.0
2,266,894	+				-0.4
2,266,894	+				+2.9
2,266,894	+				-1.1
2,266,894	+				+0.1
2,266,894	+				+0.1
2,266,895	-				+0.7
2,266,895	-				+1.6
2,266,895	-				-1.7
2,266,895	-				-1.8
2,266,895	-				+1.1
2,266,910	+				-0.1
2,266,935	+				+0.1
2,266,959	+				+0.9
2,266,959	+				+1.0
2,266,959	+				-0.1
2,266,959	+				-0.9
2,266,959	+				-1.8
2,266,960	-				-0.3
2,266,960	-				-1.5
2,266,996	+				+0.1
2,267,028	+				-0.5
2,267,029	-				+2.1
2,267,032	+				-0.2
2,267,033	-				-1.2
2,267,033	-				+0.9
2,267,051	+				-0.7
2,267,051	+				-1.4
2,267,051	+				+1.6
2,267,052	-				-0.7
2,267,052	-				-0.2
2,267,052	-				+0.2
2,267,052	-				+0.8
2,267,052	-				+1.1
2,267,052	-				-0.6
2,267,054	+				-0.4
2,267,055	-				+1.6
2,267,055	-				-0.4
2,267,055	-				+0.2
2,267,074	+		DDA3937_RS10045	0.14	+0.5
2,267,091	-		DDA3937_RS10045	0.19	+0.1
2,267,091	-		DDA3937_RS10045	0.19	+2.9
2,267,091	-		DDA3937_RS10045	0.19	+0.3
2,267,091	-		DDA3937_RS10045	0.19	+0.7
2,267,121	+		DDA3937_RS10045	0.26	+0.1
2,267,155	+		DDA3937_RS10045	0.35	-0.2
2,267,156	-		DDA3937_RS10045	0.35	-0.6
2,267,156	-				+1.6
2,267,175	+		DDA3937_RS10045	0.40	+1.8
2,267,175	+		DDA3937_RS10045	0.40	-0.4
2,267,175	+		DDA3937_RS10045	0.40	-0.3
2,267,175	+		DDA3937_RS10045	0.40	+0.2
2,267,175	+		DDA3937_RS10045	0.40	+0.3
2,267,176	-		DDA3937_RS10045	0.40	+0.1
2,267,176	-		DDA3937_RS10045	0.40	-0.9
2,267,176	-		DDA3937_RS10045	0.40	-0.4
2,267,255	+		DDA3937_RS10045	0.60	+0.5
2,267,255	+		DDA3937_RS10045	0.60	+0.8
2,267,255	+		DDA3937_RS10045	0.60	-0.9
2,267,255	+		DDA3937_RS10045	0.60	+1.1
2,267,256	-		DDA3937_RS10045	0.60	+0.3
2,267,256	-		DDA3937_RS10045	0.60	-0.6
2,267,256	-		DDA3937_RS10045	0.60	-0.8
2,267,256	-		DDA3937_RS10045	0.60	+0.3
2,267,256	-		DDA3937_RS10045	0.60	-1.7
2,267,256	-		DDA3937_RS10045	0.60	+0.1
2,267,256	-		DDA3937_RS10045	0.60	-0.8
2,267,256	-		DDA3937_RS10045	0.60	+0.4
2,267,256	-		DDA3937_RS10045	0.60	+2.8
2,267,256	-		DDA3937_RS10045	0.60	+1.4
2,267,256	-		DDA3937_RS10045	0.60	+3.2
2,267,300	+		DDA3937_RS10045	0.71	+0.6
2,267,301	-		DDA3937_RS10045	0.72	+0.3
2,267,319	-		DDA3937_RS10045	0.76	+1.0
2,267,396	+				+0.4
2,267,396	+				+1.3
2,267,397	-				+0.4
2,267,449	+				-0.9
2,267,449	+				+1.5
2,267,449	+				+1.2
2,267,449	+				-1.8
2,267,450	-				-0.9
2,267,450	-				+0.2
2,267,451	+				+1.0
2,267,451	+				-0.2
2,267,451	+				-0.5
2,267,452	-				-1.7
2,267,452	-				+0.1
2,267,452	-				-0.8
2,267,452	-				-0.2
2,267,452	-				-1.2
2,267,452	-				-1.9
2,267,453	+				-0.3
2,267,453	+				+0.2
2,267,453	+				-0.4
2,267,453	+				-0.3
2,267,453	+				+0.5
2,267,453	+				-2.5
2,267,453	+				+0.9
2,267,453	+				+2.0
2,267,453	+				+0.8
2,267,453	+				-0.3
2,267,453	+				-0.4
2,267,453	+				-0.9
2,267,453	+				+2.9
2,267,453	+				+1.4
2,267,453	+				-1.6
2,267,453	+				+2.5
2,267,453	+				+0.6
2,267,453	+				+1.5
2,267,453	+				+1.6
2,267,453	+				+0.4
2,267,453	+				+0.4
2,267,453	+				+1.8
2,267,453	+				+1.1
2,267,454	-				+0.6
2,267,454	-				+1.6
2,267,454	-				-0.7
2,267,454	-				-1.8
2,267,454	-				-1.2
2,267,454	-				+0.6
2,267,454	-				-1.2
2,267,471	+				-0.4
2,267,472	-				-0.2
2,267,484	+				+0.1
2,267,484	+				-0.0
2,267,485	-				+0.2
2,267,489	+				+2.4
2,267,489	+				+0.3
2,267,489	+				+0.0
2,267,489	+				+0.1
2,267,490	-				-1.7
2,267,506	+				+0.6
2,267,519	+				+0.2
2,267,519	+				+0.2
2,267,520	-				+0.1
2,267,522	+				+1.6
2,267,583	+				-0.8
2,267,583	+				+0.3
2,267,584	-				-0.1
2,267,704	+		DDA3937_RS10050	0.15	-2.4
2,267,708	+		DDA3937_RS10050	0.15	-0.2
2,267,708	+		DDA3937_RS10050	0.15	+0.2
2,267,708	+		DDA3937_RS10050	0.15	+3.6
2,267,708	+		DDA3937_RS10050	0.15	+1.9
2,267,708	+		DDA3937_RS10050	0.15	-0.7
2,267,708	+		DDA3937_RS10050	0.15	-0.0
2,267,708	+		DDA3937_RS10050	0.15	+0.5
2,267,708	+		DDA3937_RS10050	0.15	-0.5
2,267,709	-		DDA3937_RS10050	0.16	-1.2
2,267,709	-		DDA3937_RS10050	0.16	+0.7
2,267,709	-		DDA3937_RS10050	0.16	+0.1
2,267,709	-		DDA3937_RS10050	0.16	+0.2
2,267,712	+		DDA3937_RS10050	0.16	-0.2
2,267,798	-		DDA3937_RS10050	0.27	-0.1
2,267,828	+		DDA3937_RS10050	0.30	+0.4
2,268,012	-		DDA3937_RS10050	0.53	-0.1
2,268,012	-		DDA3937_RS10050	0.53	+0.5
2,268,046	+		DDA3937_RS10050	0.57	-1.4
2,268,046	+		DDA3937_RS10050	0.57	-0.9
2,268,046	+		DDA3937_RS10050	0.57	-1.4
2,268,046	+		DDA3937_RS10050	0.57	+1.0
2,268,046	+		DDA3937_RS10050	0.57	+0.1
2,268,047	-		DDA3937_RS10050	0.57	-0.4
2,268,047	-		DDA3937_RS10050	0.57	-0.5
2,268,092	+		DDA3937_RS10050	0.63	-0.7
2,268,092	+		DDA3937_RS10050	0.63	-1.2
2,268,092	+		DDA3937_RS10050	0.63	-1.7
2,268,092	+		DDA3937_RS10050	0.63	-0.7
2,268,092	+		DDA3937_RS10050	0.63	+0.4
2,268,093	-		DDA3937_RS10050	0.63	-0.8
2,268,093	-		DDA3937_RS10050	0.63	-0.4
2,268,093	-		DDA3937_RS10050	0.63	-0.5
2,268,093	-		DDA3937_RS10050	0.63	-0.2
2,268,242	-		DDA3937_RS10050	0.81	+1.1
2,268,282	+		DDA3937_RS10050	0.86	+0.2
2,268,283	-		DDA3937_RS10050	0.86	-1.8
2,268,283	-		DDA3937_RS10050	0.86	+0.5
2,268,283	-		DDA3937_RS10050	0.86	-1.3
2,268,324	+				-0.9
2,268,390	+				-0.5
2,268,390	+				-0.9
2,268,390	+				-0.7
2,268,390	+				-1.3
2,268,391	-				+1.5
2,268,391	-				-1.4
2,268,391	-				-0.6
2,268,391	-				+1.1
2,268,394	+				-0.8
2,268,394	+				-1.4
2,268,394	+				-0.7
2,268,394	+				+2.3
2,268,394	+				-0.5
2,268,394	+				+0.6
2,268,394	+				-0.2
2,268,394	+				-0.8
2,268,395	-				-1.5
2,268,395	-				+0.2
2,268,395	-				-0.8
2,268,395	-				-0.9
2,268,395	-				-0.1
2,268,395	-				-1.8
2,268,395	-				-0.5
2,268,395	-				-1.4
2,268,395	-				-0.5
2,268,395	-				+0.6
2,268,410	+				+0.6
2,268,465	+				-0.2
2,268,477	-				-0.1
2,268,481	+				-0.7
2,268,481	+				-2.2
2,268,481	+				-1.0
2,268,481	+				-0.9
2,268,481	+				+0.6
2,268,482	-				+1.6
2,268,482	-				+0.1
2,268,482	-				-0.4
2,268,482	-				-0.5
2,268,484	+				-1.1
2,268,484	+				-1.2
2,268,485	-				-1.2
2,268,485	-				+0.4
2,268,499	+				+1.0
2,268,538	+				-3.0
2,268,570	+				-0.5
2,268,570	+				-1.2
2,268,570	+				+3.1
2,268,570	+				+0.5
2,268,570	+				+0.1
2,268,570	+				-0.4
2,268,571	-				+0.3
2,268,571	-				-1.4
2,268,571	-				+0.0
2,268,571	-				-0.8
2,268,574	+				-0.4
2,268,574	+				-0.5
2,268,574	+				+1.5
2,268,574	+				-0.8
2,268,575	-				+1.6
2,268,575	-				-1.3
2,268,598	+				-0.2
2,268,598	+				+1.2