Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09645

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,173,797	-		DDA3937_RS09640	0.18	-0.9
2,173,810	+		DDA3937_RS09640	0.19	-0.1
2,173,811	-		DDA3937_RS09640	0.19	-0.3
2,173,811	-		DDA3937_RS09640	0.19	+0.7
2,173,814	+		DDA3937_RS09640	0.19	+0.7
2,173,814	+		DDA3937_RS09640	0.19	-0.1
2,173,814	+		DDA3937_RS09640	0.19	-0.5
2,173,815	-		DDA3937_RS09640	0.19	-0.6
2,173,815	-		DDA3937_RS09640	0.19	-1.6
2,173,815	-		DDA3937_RS09640	0.19	-1.9
2,173,815	-		DDA3937_RS09640	0.19	+1.5
2,173,817	+		DDA3937_RS09640	0.19	+0.7
2,173,818	-		DDA3937_RS09640	0.19	-0.9
2,173,935	+		DDA3937_RS09640	0.30	-3.4
2,173,936	-		DDA3937_RS09640	0.30	+0.7
2,173,963	+		DDA3937_RS09640	0.32	+0.6
2,173,964	-		DDA3937_RS09640	0.32	+0.4
2,173,997	+		DDA3937_RS09640	0.35	-0.6
2,173,997	+		DDA3937_RS09640	0.35	-1.1
2,173,997	+				-0.3
2,173,997	+		DDA3937_RS09640	0.35	-1.8
2,173,998	-		DDA3937_RS09640	0.35	-0.3
2,173,998	-		DDA3937_RS09640	0.35	-0.4
2,173,998	-		DDA3937_RS09640	0.35	-0.2
2,173,998	-		DDA3937_RS09640	0.35	-1.6
2,174,009	+		DDA3937_RS09640	0.36	+0.5
2,174,009	+		DDA3937_RS09640	0.36	-1.3
2,174,009	+		DDA3937_RS09640	0.36	+0.3
2,174,009	+		DDA3937_RS09640	0.36	-0.6
2,174,009	+		DDA3937_RS09640	0.36	-0.5
2,174,010	-		DDA3937_RS09640	0.36	-0.9
2,174,012	+		DDA3937_RS09640	0.36	+1.1
2,174,012	+		DDA3937_RS09640	0.36	-0.3
2,174,013	-		DDA3937_RS09640	0.36	-1.1
2,174,013	-		DDA3937_RS09640	0.36	+0.7
2,174,013	-		DDA3937_RS09640	0.36	-2.5
2,174,025	+		DDA3937_RS09640	0.37	-0.5
2,174,025	+		DDA3937_RS09640	0.37	-0.4
2,174,025	+		DDA3937_RS09640	0.37	-1.1
2,174,025	+		DDA3937_RS09640	0.37	-0.3
2,174,026	-		DDA3937_RS09640	0.38	+0.4
2,174,026	-		DDA3937_RS09640	0.38	-0.4
2,174,028	+				+0.7
2,174,065	-		DDA3937_RS09640	0.41	+0.1
2,174,065	-		DDA3937_RS09640	0.41	+1.0
2,174,249	+		DDA3937_RS09640	0.57	-1.1
2,174,249	+		DDA3937_RS09640	0.57	+0.1
2,174,249	+		DDA3937_RS09640	0.57	+1.0
2,174,250	-		DDA3937_RS09640	0.57	-0.7
2,174,265	+		DDA3937_RS09640	0.58	-1.4
2,174,266	-		DDA3937_RS09640	0.58	+0.4
2,174,266	-		DDA3937_RS09640	0.58	-0.6
2,174,266	-				+1.1
2,174,267	+		DDA3937_RS09640	0.58	+1.3
2,174,267	+				-0.3
2,174,267	+		DDA3937_RS09640	0.58	-0.4
2,174,267	+		DDA3937_RS09640	0.58	+1.3
2,174,268	-		DDA3937_RS09640	0.59	-0.2
2,174,268	-		DDA3937_RS09640	0.59	-0.2
2,174,296	+		DDA3937_RS09640	0.61	-1.6
2,174,375	+		DDA3937_RS09640	0.68	+0.7
2,174,375	+		DDA3937_RS09640	0.68	+0.2
2,174,502	+		DDA3937_RS09640	0.79	-3.2
2,174,502	+		DDA3937_RS09640	0.79	-1.3
2,174,503	-		DDA3937_RS09640	0.79	-1.0
2,174,503	-		DDA3937_RS09640	0.79	-1.3
2,174,503	-		DDA3937_RS09640	0.79	+1.7
2,174,504	+		DDA3937_RS09640	0.79	-0.8
2,174,585	+		DDA3937_RS09640	0.86	-0.4
2,174,586	-				-0.6
2,174,586	-		DDA3937_RS09640	0.86	+1.4
2,174,586	-		DDA3937_RS09640	0.86	+0.6
2,174,586	-		DDA3937_RS09640	0.86	-0.6
2,174,586	-		DDA3937_RS09640	0.86	-1.5
2,174,586	-		DDA3937_RS09640	0.86	-0.4
2,174,587	+		DDA3937_RS09640	0.86	-1.1
2,174,587	+		DDA3937_RS09640	0.86	+2.2
2,174,587	+		DDA3937_RS09640	0.86	+0.3
2,174,587	+		DDA3937_RS09640	0.86	-1.0
2,174,587	+		DDA3937_RS09640	0.86	-0.9
2,174,587	+		DDA3937_RS09640	0.86	-0.1
2,174,588	-		DDA3937_RS09640	0.86	-1.3
2,174,588	-		DDA3937_RS09640	0.86	-0.5
2,174,588	-		DDA3937_RS09640	0.86	+0.1
2,174,588	-		DDA3937_RS09640	0.86	-0.1
2,174,588	-		DDA3937_RS09640	0.86	+0.4
2,174,639	+				+0.7
2,174,688	-				-0.1
2,174,697	+				-0.5
2,174,697	+				-1.5
2,174,698	-				+0.1
2,174,698	-				-0.8
2,174,698	-				-1.1
2,174,818	+				+0.4
2,174,819	-				-0.1
2,174,832	-				+0.0
2,174,832	-				+0.1
2,174,952	+		DDA3937_RS09645	0.20	-0.9
2,174,953	-		DDA3937_RS09645	0.20	-0.4
2,174,953	-		DDA3937_RS09645	0.20	+0.3
2,174,972	+		DDA3937_RS09645	0.22	+0.7
2,174,972	+				+0.1
2,174,973	-		DDA3937_RS09645	0.22	+0.8
2,174,973	-		DDA3937_RS09645	0.22	-2.5
2,174,973	-		DDA3937_RS09645	0.22	-1.0
2,174,996	+		DDA3937_RS09645	0.25	-0.9
2,174,996	+		DDA3937_RS09645	0.25	+1.4
2,174,996	+		DDA3937_RS09645	0.25	-1.3
2,174,997	-		DDA3937_RS09645	0.25	+0.1
2,174,997	-		DDA3937_RS09645	0.25	+0.1
2,175,023	+		DDA3937_RS09645	0.27	-0.6
2,175,023	+		DDA3937_RS09645	0.27	+0.4
2,175,023	+		DDA3937_RS09645	0.27	+0.7
2,175,024	-		DDA3937_RS09645	0.28	-0.0
2,175,024	-		DDA3937_RS09645	0.28	+1.9
2,175,024	-		DDA3937_RS09645	0.28	+0.0
2,175,024	-		DDA3937_RS09645	0.28	-1.8
2,175,024	-		DDA3937_RS09645	0.28	-0.9
2,175,024	-		DDA3937_RS09645	0.28	+0.2
2,175,024	-		DDA3937_RS09645	0.28	-2.2
2,175,024	-		DDA3937_RS09645	0.28	+1.0
2,175,024	-		DDA3937_RS09645	0.28	+0.5
2,175,168	+		DDA3937_RS09645	0.43	-1.4
2,175,168	+		DDA3937_RS09645	0.43	-1.3
2,175,168	+		DDA3937_RS09645	0.43	-0.8
2,175,168	+		DDA3937_RS09645	0.43	-0.8
2,175,169	-		DDA3937_RS09645	0.43	-0.5
2,175,169	-		DDA3937_RS09645	0.43	+0.8
2,175,242	+		DDA3937_RS09645	0.51	+2.6
2,175,242	+		DDA3937_RS09645	0.51	+0.7
2,175,243	-		DDA3937_RS09645	0.51	+0.7
2,175,243	-		DDA3937_RS09645	0.51	+0.3
2,175,243	-		DDA3937_RS09645	0.51	-0.4
2,175,326	+		DDA3937_RS09645	0.60	+0.7
2,175,326	+		DDA3937_RS09645	0.60	-0.5
2,175,326	+		DDA3937_RS09645	0.60	-1.1
2,175,489	+		DDA3937_RS09645	0.78	+1.2
2,175,490	-		DDA3937_RS09645	0.78	+0.3
2,175,490	-		DDA3937_RS09645	0.78	+0.4
2,175,490	-		DDA3937_RS09645	0.78	+0.2
2,175,580	-				+0.7
2,175,587	+		DDA3937_RS09645	0.88	-0.1
2,175,587	+		DDA3937_RS09645	0.88	-2.2
2,175,588	-		DDA3937_RS09645	0.88	+0.1
2,175,588	-		DDA3937_RS09645	0.88	+0.3
2,175,588	-		DDA3937_RS09645	0.88	+0.2
2,175,588	-		DDA3937_RS09645	0.88	+0.3
2,175,659	+				-0.3
2,175,660	-				-0.1
2,175,660	-				-1.2
2,175,721	-				+0.7
2,175,737	-				-0.9
2,175,737	-				-0.4
2,175,767	+				+2.3
2,175,767	+				+0.7
2,175,767	+				-1.4
2,175,768	-				+0.7
2,175,779	-				+0.7
2,175,779	-				-0.1
2,175,810	+				-1.0
2,175,824	+				+0.3
2,175,825	-				-1.3
2,175,825	-				+0.4
2,175,825	-				+0.2
2,175,834	+				-1.4
2,175,835	-				+0.4
2,175,835	-				-1.8
2,175,835	-				+0.7
2,175,835	-				-0.1
2,175,835	-				+0.1
2,175,835	-				+1.3
2,175,835	-				-1.6
2,175,835	-				+0.1
2,175,863	-				-0.5
2,175,881	+				+0.2
2,175,883	+				-1.1
2,175,883	+				+0.5
2,175,883	+				-0.6
2,175,883	+				+0.4
2,175,883	+				+0.4
2,175,883	+				-0.6
2,175,884	-				+0.4
2,175,884	-				-0.9
2,175,886	+				+1.7
2,175,886	+				-1.2
2,175,886	+				-1.0
2,175,886	+				+1.1
2,175,886	+				-0.3
2,175,887	-				-1.4
2,175,887	-				-0.8
2,175,887	-				+0.7
2,175,887	-				+0.7
2,175,887	-				+0.2
2,175,898	+				-0.6
2,175,898	+				-1.1
2,175,900	+				-0.8
2,175,900	+				-0.6
2,175,900	+				-1.9
2,175,900	+				-0.1
2,175,900	+				+1.1
2,175,901	-				-1.9
2,175,901	-				+0.2
2,175,901	-				-0.9
2,175,901	-				+1.1
2,175,903	+				+0.7
2,175,903	+				+0.7
2,175,903	+				-0.8
2,175,903	+				+2.5
2,175,903	+				-0.2
2,175,903	+				-1.7
2,175,903	+				+0.3
2,175,903	+				+1.2
2,175,903	+				+0.0
2,175,903	+				-0.9
2,175,904	-				-0.8
2,175,904	-				+2.2
2,175,905	-				-0.5
2,175,907	+				-1.3
2,175,907	+				+1.0
2,175,907	+				+0.8
2,175,907	+				-0.3
2,175,913	+				-1.0
2,175,913	+				-1.9
2,175,913	+				-0.9
2,175,913	+				+1.4
2,175,914	-				-0.2
2,175,981	+				+1.3
2,175,986	+				+1.1
2,176,023	+				-0.1
2,176,023	+				-2.0
2,176,023	+				+0.0
2,176,024	-				-1.2
2,176,024	-				-2.2
2,176,061	+				-1.1
2,176,061	+				-0.2
2,176,061	+				-0.3
2,176,061	+				+0.2
2,176,061	+				-2.3
2,176,061	+				-0.4
2,176,061	+				+1.4
2,176,061	+				+0.0
2,176,061	+				-0.4
2,176,061	+				-1.1
2,176,061	+				-1.8
2,176,061	+				-0.4
2,176,061	+				+1.7
2,176,061	+				+0.8
2,176,061	+				+0.4
2,176,062	-				-1.3
2,176,062	-				+0.1
2,176,062	-				+0.5
2,176,062	-				-0.2
2,176,062	-				+0.9
2,176,062	-				+2.7
2,176,062	-				-1.4
2,176,062	-				-0.2
2,176,062	-				-0.4
2,176,064	+				-1.0
2,176,064	+				+0.5
2,176,064	+				-0.9
2,176,064	+				-1.5
2,176,065	-				+0.0
2,176,065	-				-1.1
2,176,065	-				+0.7
2,176,089	-				+0.1
2,176,098	+				-0.5
2,176,103	+				+0.0
2,176,204	-				+0.9
2,176,225	-				-0.3
2,176,233	+				+1.1
2,176,296	-				-0.2
2,176,296	-				+0.2
2,176,298	+				-0.9
2,176,298	+				-0.7
2,176,298	+				-0.8
2,176,298	+				-1.1
2,176,298	+				-0.5
2,176,299	-				+0.1
2,176,299	-				-0.8
2,176,316	+				-1.7
2,176,317	-				-1.6
2,176,317	-				-2.1
2,176,329	+				-1.5
2,176,330	-				-2.3
2,176,386	-		DDA3937_RS09650	0.12	-0.9
2,176,471	-		DDA3937_RS09650	0.24	-1.3
2,176,532	+		DDA3937_RS09650	0.32	-1.5
2,176,555	-		DDA3937_RS09650	0.35	-1.8
2,176,555	-		DDA3937_RS09650	0.35	-2.5
2,176,587	+		DDA3937_RS09650	0.40	-1.1
2,176,596	+		DDA3937_RS09650	0.41	-1.6
2,176,596	+		DDA3937_RS09650	0.41	-0.3
2,176,596	+		DDA3937_RS09650	0.41	-0.0
2,176,596	+		DDA3937_RS09650	0.41	-1.3
2,176,596	+		DDA3937_RS09650	0.41	-2.1
2,176,596	+		DDA3937_RS09650	0.41	-0.3
2,176,597	-		DDA3937_RS09650	0.41	-2.6
2,176,597	-		DDA3937_RS09650	0.41	-2.2
2,176,597	-		DDA3937_RS09650	0.41	-2.0
2,176,597	-		DDA3937_RS09650	0.41	-1.9
2,176,601	-		DDA3937_RS09650	0.41	-1.9
2,176,642	-		DDA3937_RS09650	0.47	-1.5