Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08910

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,010,939	+		DDA3937_RS08905	0.32	+0.3
2,010,939	+		DDA3937_RS08905	0.32	-0.9
2,010,940	-		DDA3937_RS08905	0.32	+1.2
2,011,020	+		DDA3937_RS08905	0.37	+0.5
2,011,030	-		DDA3937_RS08905	0.38	-1.0
2,011,039	+		DDA3937_RS08905	0.39	+0.3
2,011,039	+		DDA3937_RS08905	0.39	-0.1
2,011,039	+		DDA3937_RS08905	0.39	+0.3
2,011,039	+		DDA3937_RS08905	0.39	-1.9
2,011,039	+		DDA3937_RS08905	0.39	-0.6
2,011,040	-		DDA3937_RS08905	0.39	-1.3
2,011,040	-		DDA3937_RS08905	0.39	-0.3
2,011,042	+		DDA3937_RS08905	0.39	+0.1
2,011,042	+		DDA3937_RS08905	0.39	-0.4
2,011,043	-		DDA3937_RS08905	0.39	+1.4
2,011,182	+		DDA3937_RS08905	0.48	+0.9
2,011,182	+		DDA3937_RS08905	0.48	+0.1
2,011,183	-		DDA3937_RS08905	0.48	+0.1
2,011,183	-		DDA3937_RS08905	0.48	-0.2
2,011,184	+		DDA3937_RS08905	0.49	+1.1
2,011,184	+		DDA3937_RS08905	0.49	-0.6
2,011,185	-		DDA3937_RS08905	0.49	+0.6
2,011,185	-		DDA3937_RS08905	0.49	-0.9
2,011,185	-		DDA3937_RS08905	0.49	+0.0
2,011,185	-		DDA3937_RS08905	0.49	-1.3
2,011,200	-		DDA3937_RS08905	0.50	-0.6
2,011,200	-		DDA3937_RS08905	0.50	-0.3
2,011,307	+		DDA3937_RS08905	0.57	+0.4
2,011,307	+		DDA3937_RS08905	0.57	-1.3
2,011,307	+		DDA3937_RS08905	0.57	-2.0
2,011,307	+		DDA3937_RS08905	0.57	+0.8
2,011,308	-		DDA3937_RS08905	0.57	+0.9
2,011,369	+		DDA3937_RS08905	0.61	+0.7
2,011,370	-		DDA3937_RS08905	0.61	-0.9
2,011,370	-		DDA3937_RS08905	0.61	-0.3
2,011,408	+		DDA3937_RS08905	0.64	+0.0
2,011,409	-		DDA3937_RS08905	0.64	-2.0
2,011,409	-		DDA3937_RS08905	0.64	-1.6
2,011,491	+		DDA3937_RS08905	0.70	-0.2
2,011,491	+		DDA3937_RS08905	0.70	-0.6
2,011,491	+		DDA3937_RS08905	0.70	+0.3
2,011,522	+		DDA3937_RS08905	0.72	-0.9
2,011,522	+		DDA3937_RS08905	0.72	+0.0
2,011,522	+		DDA3937_RS08905	0.72	+1.2
2,011,523	-		DDA3937_RS08905	0.72	-0.9
2,011,523	-		DDA3937_RS08905	0.72	+0.5
2,011,523	-		DDA3937_RS08905	0.72	-1.6
2,011,604	+		DDA3937_RS08905	0.78	+0.0
2,011,604	+		DDA3937_RS08905	0.78	+0.3
2,011,605	-		DDA3937_RS08905	0.78	-0.7
2,011,605	-		DDA3937_RS08905	0.78	+0.4
2,011,605	-		DDA3937_RS08905	0.78	+0.2
2,011,605	-		DDA3937_RS08905	0.78	+0.2
2,011,610	+		DDA3937_RS08905	0.78	-2.6
2,011,610	+		DDA3937_RS08905	0.78	-2.4
2,011,610	+		DDA3937_RS08905	0.78	-0.4
2,011,611	-		DDA3937_RS08905	0.78	+0.1
2,011,611	-		DDA3937_RS08905	0.78	-0.6
2,011,611	-		DDA3937_RS08905	0.78	-0.7
2,011,611	-		DDA3937_RS08905	0.78	+0.4
2,011,611	-				-0.9
2,011,611	-		DDA3937_RS08905	0.78	-1.0
2,011,613	+				+0.1
2,011,613	+		DDA3937_RS08905	0.78	-0.5
2,011,614	-		DDA3937_RS08905	0.78	+0.8
2,011,614	-		DDA3937_RS08905	0.78	-0.3
2,011,614	-		DDA3937_RS08905	0.78	+0.3
2,011,614	-		DDA3937_RS08905	0.78	-0.1
2,011,677	+		DDA3937_RS08905	0.83	-1.1
2,011,677	+		DDA3937_RS08905	0.83	+0.1
2,011,677	+		DDA3937_RS08905	0.83	-0.0
2,011,678	-		DDA3937_RS08905	0.83	-0.1
2,011,678	-		DDA3937_RS08905	0.83	-0.2
2,011,795	+				-0.9
2,011,796	-				+0.4
2,011,911	-				-0.3
2,011,911	-				+0.4
2,011,966	-				-1.1
2,011,971	+				-2.2
2,011,972	-				-0.5
2,011,972	-				+0.4
2,012,074	+		DDA3937_RS08910	0.12	-2.5
2,012,075	-		DDA3937_RS08910	0.12	+0.1
2,012,077	+		DDA3937_RS08910	0.12	-0.6
2,012,077	+		DDA3937_RS08910	0.12	-0.8
2,012,078	-		DDA3937_RS08910	0.13	-0.6
2,012,111	+		DDA3937_RS08910	0.15	-0.9
2,012,112	-		DDA3937_RS08910	0.15	-1.5
2,012,140	+		DDA3937_RS08910	0.17	-2.9
2,012,140	+		DDA3937_RS08910	0.17	-1.1
2,012,179	+		DDA3937_RS08910	0.20	-1.1
2,012,390	+		DDA3937_RS08910	0.37	-1.5
2,012,391	-		DDA3937_RS08910	0.37	-1.1
2,012,404	+		DDA3937_RS08910	0.38	-0.9
2,012,404	+		DDA3937_RS08910	0.38	-1.5
2,012,562	+		DDA3937_RS08910	0.51	-0.2
2,012,563	-		DDA3937_RS08910	0.51	-0.7
2,012,563	-		DDA3937_RS08910	0.51	-1.3
2,012,600	+		DDA3937_RS08910	0.54	-1.1
2,012,600	+		DDA3937_RS08910	0.54	-0.6
2,012,630	-		DDA3937_RS08910	0.56	-0.3
2,012,631	+		DDA3937_RS08910	0.56	-0.6
2,012,650	+		DDA3937_RS08910	0.58	-0.3
2,012,650	+		DDA3937_RS08910	0.58	+0.5
2,012,650	+		DDA3937_RS08910	0.58	-1.1
2,012,650	+		DDA3937_RS08910	0.58	-1.1
2,012,651	-		DDA3937_RS08910	0.58	-0.8
2,012,655	+		DDA3937_RS08910	0.58	-1.6
2,012,794	+		DDA3937_RS08910	0.69	-1.3
2,012,861	+		DDA3937_RS08910	0.74	-1.6
2,012,861	+		DDA3937_RS08910	0.74	+0.3
2,012,885	-		DDA3937_RS08910	0.76	+0.6
2,012,888	+		DDA3937_RS08910	0.76	+0.1
2,012,888	+		DDA3937_RS08910	0.76	-1.2
2,012,888	+		DDA3937_RS08910	0.76	+0.1
2,012,888	+		DDA3937_RS08910	0.76	-0.3
2,012,888	+		DDA3937_RS08910	0.76	+0.7
2,012,888	+		DDA3937_RS08910	0.76	-0.6
2,012,889	-		DDA3937_RS08910	0.76	+1.0
2,012,889	-		DDA3937_RS08910	0.76	-0.2
2,012,889	-		DDA3937_RS08910	0.76	-1.0
2,012,889	-		DDA3937_RS08910	0.76	+0.4
2,012,889	-		DDA3937_RS08910	0.76	-0.5
2,012,889	-		DDA3937_RS08910	0.76	+1.7
2,012,947	+		DDA3937_RS08910	0.81	-1.8
2,012,947	+		DDA3937_RS08910	0.81	+0.3
2,012,948	-		DDA3937_RS08910	0.81	+2.0
2,012,974	-		DDA3937_RS08910	0.83	+0.4
2,012,974	-		DDA3937_RS08910	0.83	-0.2
2,012,974	-		DDA3937_RS08910	0.83	+0.1
2,012,974	-		DDA3937_RS08910	0.83	-0.0
2,013,047	+		DDA3937_RS08910	0.89	+0.3
2,013,047	+		DDA3937_RS08910	0.89	-1.1
2,013,126	+				+0.7
2,013,205	+				-0.3
2,013,208	+				-0.2
2,013,261	-				-0.4
2,013,261	-				-1.9
2,013,268	+				-1.2
2,013,270	+				-1.3
2,013,276	-				-0.7
2,013,276	-				-0.3
2,013,284	+				-0.2
2,013,298	-				-2.2
2,013,377	+		DDA3937_RS08915	0.11	-0.7
2,013,383	-		DDA3937_RS08915	0.12	-0.3
2,013,383	-		DDA3937_RS08915	0.12	-0.6
2,013,383	-		DDA3937_RS08915	0.12	+3.0
2,013,483	+		DDA3937_RS08915	0.22	+1.7
2,013,483	+		DDA3937_RS08915	0.22	-0.2
2,013,483	+		DDA3937_RS08915	0.22	-1.3
2,013,483	+		DDA3937_RS08915	0.22	+0.2
2,013,483	+		DDA3937_RS08915	0.22	-0.2
2,013,484	-		DDA3937_RS08915	0.22	-1.3
2,013,484	-		DDA3937_RS08915	0.22	-0.3
2,013,484	-		DDA3937_RS08915	0.22	+0.5
2,013,485	+		DDA3937_RS08915	0.22	-1.1
2,013,485	+		DDA3937_RS08915	0.22	+6.9
2,013,509	+		DDA3937_RS08915	0.24	-0.1
2,013,510	-		DDA3937_RS08915	0.24	-1.1
2,013,519	+		DDA3937_RS08915	0.25	-1.5
2,013,519	+				+0.1
2,013,520	-		DDA3937_RS08915	0.25	+1.0
2,013,524	+		DDA3937_RS08915	0.26	-0.9
2,013,524	+		DDA3937_RS08915	0.26	-1.0
2,013,524	+		DDA3937_RS08915	0.26	-1.5
2,013,524	+		DDA3937_RS08915	0.26	+1.0
2,013,525	-		DDA3937_RS08915	0.26	-1.5
2,013,525	-		DDA3937_RS08915	0.26	-1.6
2,013,525	-		DDA3937_RS08915	0.26	-2.3
2,013,525	-		DDA3937_RS08915	0.26	-1.0
2,013,525	-		DDA3937_RS08915	0.26	+0.8
2,013,527	-		DDA3937_RS08915	0.26	-0.1
2,013,568	-		DDA3937_RS08915	0.30	-0.9
2,013,568	-		DDA3937_RS08915	0.30	-0.0
2,013,610	+		DDA3937_RS08915	0.34	-0.5
2,013,681	+		DDA3937_RS08915	0.41	-1.1
2,013,682	-				+0.1
2,013,695	+		DDA3937_RS08915	0.42	-0.9
2,013,696	-		DDA3937_RS08915	0.42	-1.3
2,013,696	-		DDA3937_RS08915	0.42	+0.3
2,013,727	+		DDA3937_RS08915	0.45	+1.9
2,013,743	-		DDA3937_RS08915	0.47	-0.7
2,013,743	-		DDA3937_RS08915	0.47	+0.1
2,013,770	-		DDA3937_RS08915	0.49	+0.5
2,013,770	-		DDA3937_RS08915	0.49	-0.2
2,013,774	+		DDA3937_RS08915	0.50	-0.6
2,013,774	+		DDA3937_RS08915	0.50	-1.5
2,013,774	+		DDA3937_RS08915	0.50	-0.6
2,013,774	+		DDA3937_RS08915	0.50	+0.7
2,013,775	-		DDA3937_RS08915	0.50	-1.5
2,013,775	-		DDA3937_RS08915	0.50	-1.3
2,013,775	-		DDA3937_RS08915	0.50	-0.6
2,013,775	-		DDA3937_RS08915	0.50	+0.3
2,013,775	-		DDA3937_RS08915	0.50	-1.4
2,013,775	-		DDA3937_RS08915	0.50	+0.4
2,013,775	-		DDA3937_RS08915	0.50	+0.6
2,013,775	-		DDA3937_RS08915	0.50	+3.0
2,013,818	+		DDA3937_RS08915	0.54	-2.5
2,013,818	+		DDA3937_RS08915	0.54	+1.5
2,013,818	+		DDA3937_RS08915	0.54	-0.3
2,013,818	+		DDA3937_RS08915	0.54	-1.7
2,013,818	+		DDA3937_RS08915	0.54	+0.1
2,013,819	-		DDA3937_RS08915	0.54	-1.5
2,013,819	-		DDA3937_RS08915	0.54	-0.9
2,013,819	-		DDA3937_RS08915	0.54	-2.5
2,013,875	+				+1.1
2,013,875	+		DDA3937_RS08915	0.60	-0.3
2,013,876	-		DDA3937_RS08915	0.60	-0.0
2,013,879	+		DDA3937_RS08915	0.60	-1.0
2,013,879	+		DDA3937_RS08915	0.60	-0.7
2,013,879	+		DDA3937_RS08915	0.60	+2.0
2,013,879	+		DDA3937_RS08915	0.60	+0.2
2,013,879	+		DDA3937_RS08915	0.60	+0.5
2,013,879	+		DDA3937_RS08915	0.60	+0.4
2,013,880	-		DDA3937_RS08915	0.60	+0.1
2,013,880	-		DDA3937_RS08915	0.60	-0.1
2,013,887	+		DDA3937_RS08915	0.61	-2.2
2,013,887	+		DDA3937_RS08915	0.61	-0.7
2,013,887	+		DDA3937_RS08915	0.61	+0.7
2,013,913	+		DDA3937_RS08915	0.63	-0.7
2,013,913	+		DDA3937_RS08915	0.63	+0.1
2,013,913	+		DDA3937_RS08915	0.63	-0.6
2,013,914	-		DDA3937_RS08915	0.63	-0.9
2,013,914	-		DDA3937_RS08915	0.63	+2.5
2,013,914	-		DDA3937_RS08915	0.63	+1.5
2,013,914	-				+0.1
2,013,915	+		DDA3937_RS08915	0.63	-1.7
2,013,915	+		DDA3937_RS08915	0.63	+0.1
2,013,915	+		DDA3937_RS08915	0.63	+0.2
2,013,916	-		DDA3937_RS08915	0.63	+0.7
2,013,916	-		DDA3937_RS08915	0.63	-1.9
2,013,916	-		DDA3937_RS08915	0.63	-0.5
2,013,916	-		DDA3937_RS08915	0.63	+1.0
2,013,931	+		DDA3937_RS08915	0.65	-0.6
2,013,931	+		DDA3937_RS08915	0.65	-0.8
2,013,931	+		DDA3937_RS08915	0.65	-0.1
2,013,931	+		DDA3937_RS08915	0.65	-1.5
2,013,932	-		DDA3937_RS08915	0.65	-2.3
2,013,932	-		DDA3937_RS08915	0.65	+0.1
2,013,932	-		DDA3937_RS08915	0.65	+6.5
2,013,935	+		DDA3937_RS08915	0.65	-1.1
2,013,935	+		DDA3937_RS08915	0.65	+0.1
2,013,935	+		DDA3937_RS08915	0.65	-0.4
2,013,935	+		DDA3937_RS08915	0.65	+0.3
2,013,935	+				+0.4
2,013,935	+		DDA3937_RS08915	0.65	+0.1
2,013,935	+		DDA3937_RS08915	0.65	-0.5
2,013,936	-		DDA3937_RS08915	0.65	+1.7
2,013,936	-		DDA3937_RS08915	0.65	+0.9
2,013,936	-		DDA3937_RS08915	0.65	+0.1
2,013,936	-		DDA3937_RS08915	0.65	-1.0
2,013,936	-		DDA3937_RS08915	0.65	-1.7
2,013,936	-		DDA3937_RS08915	0.65	-0.7
2,013,979	+		DDA3937_RS08915	0.70	-0.6
2,013,980	-		DDA3937_RS08915	0.70	-0.1
2,013,980	-		DDA3937_RS08915	0.70	-1.7
2,013,980	-		DDA3937_RS08915	0.70	-0.4
2,014,010	+		DDA3937_RS08915	0.73	-1.1
2,014,011	-		DDA3937_RS08915	0.73	-1.6
2,014,011	-		DDA3937_RS08915	0.73	-2.3
2,014,063	+		DDA3937_RS08915	0.78	-0.3
2,014,064	-		DDA3937_RS08915	0.78	-0.9
2,014,064	-		DDA3937_RS08915	0.78	-0.0
2,014,155	-		DDA3937_RS08915	0.87	-1.8
2,014,155	-		DDA3937_RS08915	0.87	-0.4