Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08265

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,867,566	+				-0.5
1,867,566	+				+0.7
1,867,566	+				+1.3
1,867,682	+		DDA3937_RS08260	0.21	-2.5
1,867,682	+		DDA3937_RS08260	0.21	+1.3
1,867,718	+		DDA3937_RS08260	0.26	+0.4
1,867,734	-		DDA3937_RS08260	0.29	+0.3
1,867,750	+		DDA3937_RS08260	0.31	+1.2
1,867,751	-		DDA3937_RS08260	0.31	-2.2
1,867,801	+				+0.2
1,867,801	+		DDA3937_RS08260	0.38	-1.4
1,867,801	+		DDA3937_RS08260	0.38	-1.1
1,867,864	+		DDA3937_RS08260	0.46	-0.3
1,867,865	-		DDA3937_RS08260	0.47	-0.8
1,867,865	-		DDA3937_RS08260	0.47	-0.7
1,867,869	-		DDA3937_RS08260	0.47	-1.1
1,867,869	-		DDA3937_RS08260	0.47	+0.2
1,867,923	+				+1.7
1,868,054	-		DDA3937_RS08260	0.73	+0.5
1,868,102	+		DDA3937_RS08260	0.79	-0.1
1,868,150	+		DDA3937_RS08260	0.86	-0.3
1,868,243	-				+0.7
1,868,243	-				-0.6
1,868,243	-				-0.6
1,868,243	-				-0.5
1,868,300	+				-0.9
1,868,300	+				+0.4
1,868,301	-				+0.2
1,868,301	-				+0.4
1,868,333	+				-1.0
1,868,333	+				+0.3
1,868,334	-				-0.7
1,868,334	-				+3.8
1,868,354	-				-1.4
1,868,354	-				+0.4
1,868,354	-				-0.1
1,868,385	-				-2.1
1,868,421	+				-0.3
1,868,422	-				-1.4
1,868,422	-				+0.0
1,868,461	-				+3.4
1,868,520	+				-0.7
1,868,523	+				-0.5
1,868,543	+				-2.3
1,868,544	-				-0.6
1,868,547	+				+1.0
1,868,547	+				-0.9
1,868,547	+				-0.3
1,868,556	+				-0.3
1,868,564	-				+1.0
1,868,565	+				-0.6
1,868,565	+				-0.8
1,868,565	+				-0.5
1,868,565	+				-0.6
1,868,565	+				-2.0
1,868,565	+				+0.3
1,868,565	+				+0.3
1,868,565	+				+0.2
1,868,566	-				-0.8
1,868,566	-				-0.9
1,868,566	-				-1.5
1,868,566	-				+2.5
1,868,566	-				+1.7
1,868,566	-				+0.0
1,868,606	-				-1.1
1,868,610	+				-0.8
1,868,610	+				-0.1
1,868,610	+				-2.5
1,868,611	-				-0.3
1,868,611	-				-0.3
1,868,627	-				-0.1
1,868,640	-		DDA3937_RS08265	0.11	-1.9
1,868,640	-		DDA3937_RS08265	0.11	+0.1
1,868,640	-		DDA3937_RS08265	0.11	-0.4
1,868,663	+		DDA3937_RS08265	0.14	-1.6
1,868,663	+		DDA3937_RS08265	0.14	+1.0
1,868,663	+		DDA3937_RS08265	0.14	+0.2
1,868,663	+		DDA3937_RS08265	0.14	-0.3
1,868,663	+		DDA3937_RS08265	0.14	-0.3
1,868,663	+		DDA3937_RS08265	0.14	-1.9
1,868,663	+		DDA3937_RS08265	0.14	+2.7
1,868,663	+		DDA3937_RS08265	0.14	-0.7
1,868,663	+		DDA3937_RS08265	0.14	-0.9
1,868,663	+		DDA3937_RS08265	0.14	-1.4
1,868,663	+		DDA3937_RS08265	0.14	+1.0
1,868,663	+		DDA3937_RS08265	0.14	-0.9
1,868,663	+		DDA3937_RS08265	0.14	+2.6
1,868,663	+		DDA3937_RS08265	0.14	-0.1
1,868,663	+		DDA3937_RS08265	0.14	+1.0
1,868,664	-		DDA3937_RS08265	0.14	-0.1
1,868,664	-		DDA3937_RS08265	0.14	-2.2
1,868,664	-		DDA3937_RS08265	0.14	-2.3
1,868,664	-		DDA3937_RS08265	0.14	-2.6
1,868,664	-		DDA3937_RS08265	0.14	+0.7
1,868,664	-		DDA3937_RS08265	0.14	-0.6
1,868,664	-		DDA3937_RS08265	0.14	-0.1
1,868,664	-		DDA3937_RS08265	0.14	-0.7
1,868,664	-		DDA3937_RS08265	0.14	+0.9
1,868,664	-		DDA3937_RS08265	0.14	-1.7
1,868,668	-		DDA3937_RS08265	0.15	+0.7
1,868,668	-		DDA3937_RS08265	0.15	-1.3
1,868,668	-		DDA3937_RS08265	0.15	-0.6
1,868,668	-		DDA3937_RS08265	0.15	-0.4
1,868,707	+				+1.7
1,868,717	-		DDA3937_RS08265	0.21	+1.7
1,868,738	+				-1.1
1,868,761	+		DDA3937_RS08265	0.27	-0.6
1,868,762	-		DDA3937_RS08265	0.27	-1.1
1,868,762	-		DDA3937_RS08265	0.27	-0.6
1,868,794	+		DDA3937_RS08265	0.31	-1.1
1,868,794	+		DDA3937_RS08265	0.31	-0.8
1,868,795	-		DDA3937_RS08265	0.31	-0.0
1,868,795	-		DDA3937_RS08265	0.31	+0.5
1,868,875	+		DDA3937_RS08265	0.42	+1.4
1,868,875	+		DDA3937_RS08265	0.42	+0.1
1,868,875	+		DDA3937_RS08265	0.42	-0.6
1,868,875	+		DDA3937_RS08265	0.42	+0.1
1,868,936	-		DDA3937_RS08265	0.49	-0.3
1,868,940	+		DDA3937_RS08265	0.50	-0.2
1,868,940	+		DDA3937_RS08265	0.50	-0.0
1,868,940	+		DDA3937_RS08265	0.50	-0.4
1,868,941	-		DDA3937_RS08265	0.50	-1.0
1,868,941	-		DDA3937_RS08265	0.50	+1.7
1,868,959	+		DDA3937_RS08265	0.52	+0.0
1,868,963	+				+0.7
1,868,963	+		DDA3937_RS08265	0.53	-0.9
1,868,963	+		DDA3937_RS08265	0.53	+1.4
1,868,963	+		DDA3937_RS08265	0.53	+1.3
1,868,963	+		DDA3937_RS08265	0.53	-1.1
1,868,964	-		DDA3937_RS08265	0.53	+0.1
1,869,064	+		DDA3937_RS08265	0.66	-0.4
1,869,111	+		DDA3937_RS08265	0.72	+0.0
1,869,184	-		DDA3937_RS08265	0.82	-1.6
1,869,210	+		DDA3937_RS08265	0.85	-0.7
1,869,211	-				+1.1
1,869,211	-		DDA3937_RS08265	0.85	+0.0
1,869,218	-		DDA3937_RS08265	0.86	-0.3
1,869,246	+		DDA3937_RS08265	0.90	+0.8
1,869,246	+		DDA3937_RS08265	0.90	+1.7
1,869,247	-		DDA3937_RS08265	0.90	-3.1
1,869,295	+				-1.1
1,869,295	+				-1.4
1,869,346	+				-0.4
1,869,346	+				-0.3
1,869,430	+				-0.6
1,869,431	-				-1.3
1,869,474	-		DDA3937_RS08270	0.11	+0.7
1,869,474	-		DDA3937_RS08270	0.11	-0.9
1,869,501	-		DDA3937_RS08270	0.13	-0.3
1,869,514	+		DDA3937_RS08270	0.14	-0.6
1,869,514	+		DDA3937_RS08270	0.14	-1.1
1,869,514	+		DDA3937_RS08270	0.14	-1.0
1,869,514	+		DDA3937_RS08270	0.14	-0.2
1,869,515	-		DDA3937_RS08270	0.14	-1.4
1,869,563	-		DDA3937_RS08270	0.18	-0.1
1,869,581	-		DDA3937_RS08270	0.19	-0.1
1,869,581	-		DDA3937_RS08270	0.19	+1.1
1,869,584	-		DDA3937_RS08270	0.20	-0.5
1,869,584	-		DDA3937_RS08270	0.20	-0.3
1,869,802	+		DDA3937_RS08270	0.38	+0.5
1,869,803	-		DDA3937_RS08270	0.38	-0.7
1,869,803	-		DDA3937_RS08270	0.38	+0.0
1,869,859	+		DDA3937_RS08270	0.42	-1.7
1,869,860	-		DDA3937_RS08270	0.42	-1.1
1,869,860	-		DDA3937_RS08270	0.42	-0.3
1,869,872	+		DDA3937_RS08270	0.43	-1.3
1,869,872	+		DDA3937_RS08270	0.43	-2.2
1,869,878	+		DDA3937_RS08270	0.44	+0.5
1,869,878	+		DDA3937_RS08270	0.44	-0.5
1,869,878	+		DDA3937_RS08270	0.44	-0.3
1,869,878	+		DDA3937_RS08270	0.44	+0.9
1,869,879	-		DDA3937_RS08270	0.44	-0.0
1,869,879	-		DDA3937_RS08270	0.44	-0.7
1,869,879	-		DDA3937_RS08270	0.44	-0.0
1,869,879	-		DDA3937_RS08270	0.44	-0.4
1,869,879	-		DDA3937_RS08270	0.44	+1.7
1,869,879	-		DDA3937_RS08270	0.44	+3.7
1,869,879	-		DDA3937_RS08270	0.44	-2.0
1,869,896	-		DDA3937_RS08270	0.45	+0.2
1,869,912	+				-0.6
1,869,912	+		DDA3937_RS08270	0.47	+0.7
1,869,912	+		DDA3937_RS08270	0.47	-1.2
1,869,912	+		DDA3937_RS08270	0.47	+0.7
1,869,974	+		DDA3937_RS08270	0.52	-1.1
1,869,975	-		DDA3937_RS08270	0.52	+1.7
1,869,975	-		DDA3937_RS08270	0.52	+0.1
1,869,977	+		DDA3937_RS08270	0.52	-0.3
1,869,977	+		DDA3937_RS08270	0.52	+0.0
1,869,978	-		DDA3937_RS08270	0.52	-0.6
1,869,978	-		DDA3937_RS08270	0.52	+0.6
1,869,987	+		DDA3937_RS08270	0.53	+0.7
1,869,987	+		DDA3937_RS08270	0.53	-0.3
1,869,987	+		DDA3937_RS08270	0.53	+0.4
1,869,987	+		DDA3937_RS08270	0.53	+0.1
1,869,988	-		DDA3937_RS08270	0.53	-1.9
1,869,988	-		DDA3937_RS08270	0.53	-2.1
1,870,115	+		DDA3937_RS08270	0.63	+1.7
1,870,116	-		DDA3937_RS08270	0.63	-1.6
1,870,121	+		DDA3937_RS08270	0.64	-1.3
1,870,121	+		DDA3937_RS08270	0.64	-0.3
1,870,126	-		DDA3937_RS08270	0.64	+0.2
1,870,126	-		DDA3937_RS08270	0.64	-1.4
1,870,126	-		DDA3937_RS08270	0.64	+0.7
1,870,126	-		DDA3937_RS08270	0.64	-0.2
1,870,224	+		DDA3937_RS08270	0.72	-0.1
1,870,224	+		DDA3937_RS08270	0.72	+0.7
1,870,224	+		DDA3937_RS08270	0.72	+0.4
1,870,253	+		DDA3937_RS08270	0.75	-0.7
1,870,254	-		DDA3937_RS08270	0.75	+2.5
1,870,254	-		DDA3937_RS08270	0.75	-0.6
1,870,254	-		DDA3937_RS08270	0.75	-1.3
1,870,254	-		DDA3937_RS08270	0.75	+0.5
1,870,290	-		DDA3937_RS08270	0.78	-0.7
1,870,290	-		DDA3937_RS08270	0.78	+0.5
1,870,295	+		DDA3937_RS08270	0.78	-1.1
1,870,295	+		DDA3937_RS08270	0.78	-0.7
1,870,295	+		DDA3937_RS08270	0.78	-0.6
1,870,295	+		DDA3937_RS08270	0.78	-1.7
1,870,296	-		DDA3937_RS08270	0.78	-0.6
1,870,296	-		DDA3937_RS08270	0.78	-1.3
1,870,299	+		DDA3937_RS08270	0.78	-1.0
1,870,299	+		DDA3937_RS08270	0.78	-0.1
1,870,299	+		DDA3937_RS08270	0.78	-0.1